SCMH1 (Scm polycomb group protein homolog 1)

2014-11-01   Dessen P  

Identity

HGNC
SCMH1
LOCATION
1p34.2
LOCUSID
22955
ALIAS
Scml3
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 22955
MIM: 616396
HGNC: 19003
Ensembl: ENSG00000010803

Variants:

dbSNP: 22955
ClinVar: 22955
TCGA: ENSG00000010803
COSMIC: SCMH1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000010803ENST00000326197Q96GD3
ENSG00000010803ENST00000337495Q96GD3
ENSG00000010803ENST00000361191Q96GD3
ENSG00000010803ENST00000361705Q96GD3
ENSG00000010803ENST00000372595Q96GD3
ENSG00000010803ENST00000372596Q96GD3
ENSG00000010803ENST00000372597Q96GD3
ENSG00000010803ENST00000397171Q96GD3
ENSG00000010803ENST00000397174Q96GD3
ENSG00000010803ENST00000402904Q96GD3
ENSG00000010803ENST00000456518Q96GD3
ENSG00000010803ENST00000472037A0A087WW29

Expression (GTEx)

0
10
20
30
40
50
60
70
80
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Pathways

PathwaySourceExternal ID
Metabolism of proteinsREACTOMER-HSA-392499
Post-translational protein modificationREACTOMER-HSA-597592
SUMOylationREACTOMER-HSA-2990846
SUMO E3 ligases SUMOylate target proteinsREACTOMER-HSA-3108232
SUMOylation of DNA damage response and repair proteinsREACTOMER-HSA-3108214
Cellular responses to stressREACTOMER-HSA-2262752
Cellular SenescenceREACTOMER-HSA-2559583
Oxidative Stress Induced SenescenceREACTOMER-HSA-2559580
SUMOylation of RNA binding proteinsREACTOMER-HSA-4570464

References

Pubmed IDYearTitleCitations
205466122010The role of height-associated loci identified in genome wide association studies in the determination of pediatric stature.28
205466122010The role of height-associated loci identified in genome wide association studies in the determination of pediatric stature.28
192660772009Genetic determinants of height growth assessed longitudinally from infancy to adulthood in the northern Finland birth cohort 1966.62
192660772009Genetic determinants of height growth assessed longitudinally from infancy to adulthood in the northern Finland birth cohort 1966.62

Citation

Dessen P

SCMH1 (Scm polycomb group protein homolog 1)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/73042/scmh1-(scm-polycomb-group-protein-homolog-1)