SGCB (sarcoglycan beta)

2014-11-01  

Identity

HGNC
SGCB
LOCATION
4q12
LOCUSID
6443
ALIAS
A3b,LGMD2E,LGMDR4,SGC
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 6443
MIM: 600900
HGNC: 10806
Ensembl: ENSG00000163069

Variants:

dbSNP: 6443
ClinVar: 6443
TCGA: ENSG00000163069
COSMIC: SGCB

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000163069ENST00000381431Q16585
ENSG00000163069ENST00000381431Q5U0N0
ENSG00000163069ENST00000506357H0Y8J3
ENSG00000163069ENST00000514133H0YA15

Expression (GTEx)

0
50
100
150
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Pathways

PathwaySourceExternal ID
Hypertrophic cardiomyopathy (HCM)KEGGko05410
Hypertrophic cardiomyopathy (HCM)KEGGhsa05410
Arrhythmogenic right ventricular cardiomyopathy (ARVC)KEGGko05412
Arrhythmogenic right ventricular cardiomyopathy (ARVC)KEGGhsa05412
Dilated cardiomyopathyKEGGko05414
Dilated cardiomyopathyKEGGhsa05414
Viral myocarditisKEGGhsa05416

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
373179682023Comprehensive functional characterization of SGCB coding variants predicts pathogenicity in limb-girdle muscular dystrophy type R4/2E.1
376999682023Identification of a shared, common haplotype segregating with an SGCB c.544 T > G mutation in Indian patients affected with sarcoglycanopathy.0
373179682023Comprehensive functional characterization of SGCB coding variants predicts pathogenicity in limb-girdle muscular dystrophy type R4/2E.1
376999682023Identification of a shared, common haplotype segregating with an SGCB c.544 T > G mutation in Indian patients affected with sarcoglycanopathy.0
354165322022Clinical, genetic profile and disease progression of sarcoglycanopathies in a large cohort from India: high prevalence of SGCB c.544A > C.3
354165322022Clinical, genetic profile and disease progression of sarcoglycanopathies in a large cohort from India: high prevalence of SGCB c.544A > C.3
286870632017LGMD2E is the most common type of sarcoglycanopathies in the Iranian population.8
286870632017LGMD2E is the most common type of sarcoglycanopathies in the Iranian population.8
258627952015Clinical and genetic spectrum in limb-girdle muscular dystrophy type 2E.24
258627952015Clinical and genetic spectrum in limb-girdle muscular dystrophy type 2E.24
189960102008Sarcoglycanopathies: can muscle immunoanalysis predict the genotype?22
189960102008Sarcoglycanopathies: can muscle immunoanalysis predict the genotype?22
169344662006Muscle protein analysis in the detection of heterozygotes for recessive limb girdle muscular dystrophy type 2B and 2E.12
170363162006The beta-delta-core of sarcoglycan is essential for deposition at the plasma membrane.11
169344662006Muscle protein analysis in the detection of heterozygotes for recessive limb girdle muscular dystrophy type 2B and 2E.12

Citation

Dessen P

SGCB (sarcoglycan beta)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/73178/sgcb-(sarcoglycan-beta)