SH3TC1 (SH3 domain and tetratricopeptide repeats 1)

2014-11-01  

Identity

HGNC
SH3TC1
LOCATION
4p16.1
LOCUSID
54436
ALIAS
-
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 54436
HGNC: 26009
Ensembl: ENSG00000125089

Variants:

dbSNP: 54436
ClinVar: 54436
TCGA: ENSG00000125089
COSMIC: SH3TC1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000125089ENST00000245105Q8TE82
ENSG00000125089ENST00000382521Q6NVH2
ENSG00000125089ENST00000457650E7EQR1
ENSG00000125089ENST00000502669D6RI07
ENSG00000125089ENST00000507891H0YAJ7
ENSG00000125089ENST00000508641H0YA34
ENSG00000125089ENST00000509119D6RC98
ENSG00000125089ENST00000511002H0Y9A4
ENSG00000125089ENST00000512966U3KQ04
ENSG00000125089ENST00000515682D6REB6

Expression (GTEx)

0
5
10
15
20
25
30
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
N/A

References

Pubmed IDYearTitleCitations
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.78
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.78
192400612009Coeliac disease-associated risk variants in TNFAIP3 and REL implicate altered NF-kappaB signalling.94
192400612009Coeliac disease-associated risk variants in TNFAIP3 and REL implicate altered NF-kappaB signalling.94

Citation

Dessen P

SH3TC1 (SH3 domain and tetratricopeptide repeats 1)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/73215/sh3tc1-(sh3-domain-and-tetratricopeptide-repeats-1)