SNAPC3 (small nuclear RNA activating complex polypeptide 3)

2014-11-01  

Identity

HGNC
SNAPC3
LOCATION
9p22.3
LOCUSID
6619
ALIAS
PTFbeta,SNAP50
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 6619
MIM: 602348
HGNC: 11136
Ensembl: ENSG00000164975

Variants:

dbSNP: 6619
ClinVar: 6619
TCGA: ENSG00000164975
COSMIC: SNAPC3

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000164975ENST00000380799Q5T284
ENSG00000164975ENST00000380821Q92966
ENSG00000164975ENST00000421710Q5T282
ENSG00000164975ENST00000467062Q92966
ENSG00000164975ENST00000490969Q92966
ENSG00000164975ENST00000610884Q92966

Expression (GTEx)

0
5
10
15
20
25
30
35
40
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Pathways

PathwaySourceExternal ID
Gene ExpressionREACTOMER-HSA-74160
RNA Polymerase I, RNA Polymerase III, and Mitochondrial TranscriptionREACTOMER-HSA-504046
RNA Polymerase III TranscriptionREACTOMER-HSA-74158
RNA Polymerase III Abortive And Retractive InitiationREACTOMER-HSA-749476
RNA Polymerase III Transcription InitiationREACTOMER-HSA-76046
RNA Polymerase III Transcription Initiation From Type 3 PromoterREACTOMER-HSA-76071
RNA polymerase II transcribes snRNA genesREACTOMER-HSA-6807505

References

Pubmed IDYearTitleCitations
169018962006The unorthodox SNAP50 zinc finger domain contributes to cooperative promoter recognition by human SNAPC.10
169018962006The unorthodox SNAP50 zinc finger domain contributes to cooperative promoter recognition by human SNAPC.10

Citation

Dessen P

SNAPC3 (small nuclear RNA activating complex polypeptide 3)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/73603/case-report-explorer/meetings/