SNAPC5 (small nuclear RNA activating complex polypeptide 5)

2014-11-01  

Identity

HGNC
SNAPC5
LOCATION
15q22.31
LOCUSID
10302
ALIAS
SNAP19
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 10302
MIM: 605979
HGNC: 15484
Ensembl: ENSG00000174446

Variants:

dbSNP: 10302
ClinVar: 10302
TCGA: ENSG00000174446
COSMIC: SNAPC5

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000174446ENST00000307979O75971
ENSG00000174446ENST00000316634O75971
ENSG00000174446ENST00000316634A0A024R5X1
ENSG00000174446ENST00000395589O75971
ENSG00000174446ENST00000395589A0A024R5X1
ENSG00000174446ENST00000562411O75971
ENSG00000174446ENST00000562411A0A024R5X1
ENSG00000174446ENST00000563480O75971
ENSG00000174446ENST00000563480A0A024R5X1
ENSG00000174446ENST00000565465H3BSI3
ENSG00000174446ENST00000566658H3BSI3
ENSG00000174446ENST00000568875H3BQA0

Expression (GTEx)

0
5
10
15
20
25
30
35
40
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Pathways

PathwaySourceExternal ID
Gene ExpressionREACTOMER-HSA-74160
RNA Polymerase I, RNA Polymerase III, and Mitochondrial TranscriptionREACTOMER-HSA-504046
RNA Polymerase III TranscriptionREACTOMER-HSA-74158
RNA Polymerase III Abortive And Retractive InitiationREACTOMER-HSA-749476
RNA Polymerase III Transcription InitiationREACTOMER-HSA-76046
RNA Polymerase III Transcription Initiation From Type 3 PromoterREACTOMER-HSA-76071
RNA polymerase II transcribes snRNA genesREACTOMER-HSA-6807505

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
276556372016COL3A1 and SNAP91: novel glioblastoma markers with diagnostic and prognostic value.39
276556372016COL3A1 and SNAP91: novel glioblastoma markers with diagnostic and prognostic value.39

Citation

Dessen P

SNAPC5 (small nuclear RNA activating complex polypeptide 5)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/73605/snapc5-(small-nuclear-rna-activating-complex-polypeptide-5)