SNED1 (sushi, nidogen and EGF like domains 1)

2014-11-01  

Identity

HGNC
SNED1
LOCATION
2q37.3
LOCUSID
25992
ALIAS
IRE-BP1,SST3,Snep
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 25992
MIM: 616634
HGNC: 24696
Ensembl: ENSG00000162804

Variants:

dbSNP: 25992
ClinVar: 25992
TCGA: ENSG00000162804
COSMIC: SNED1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000162804ENST00000310397Q8TER0
ENSG00000162804ENST00000342631B5MEF5
ENSG00000162804ENST00000401644H7BYY9
ENSG00000162804ENST00000401884Q8TER0
ENSG00000162804ENST00000405547Q8TER0
ENSG00000162804ENST00000420591H7C0D4
ENSG00000162804ENST00000431690H7C1R9

Expression (GTEx)

0
10
20
30
40
50
60
70
80
90
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
lung
oral mucosa
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
ovary
fallopian tube
endometrium 1
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
skin 1
skin 2
appendix
spleen
lymph node
tonsil

Citation

Dessen P

SNED1 (sushi, nidogen and EGF like domains 1)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/73636/sned1-(sushi-nidogen-and-egf-like-domains-1)