SPTY2D1 (SPT2 chromatin protein domain containing 1)

2014-11-01

Identity

HGNC

SPTY2D1

LOCATION

11p15.1

LOCUSID

144108

ALIAS

Spt2

Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, contribute in submission tool

Other Information

Locus ID:

NCBI: 144108
HGNC: 26818
Ensembl: ENSG00000179119

Variants:

dbSNP: 144108
ClinVar: 144108
TCGA: ENSG00000179119
COSMIC: SPTY2D1

RNA/Proteins

Gene ID	Transcript ID	Uniprot
ENSG00000179119	ENST00000336349	Q68D10

Expression (GTEx)

Adipose - Subcutaneous

Adipose - Visceral

Adrenal Gland

Artery - Aorta

Artery - Tibial

Bladder

Brain - Amygdala

Brain - Anterior cingulate cortex

Brain - Caudate

Brain - Cerebellar Hemisphere

Brain - Cerebellum

Brain - Cortex

Brain - Frontal Cortex

Brain - Hippocampus

Brain - Hypothalamus

Brain - Nucleus accumbens

Brain - Putamen

Brain - Spinal cord

Brain - Substantia nigra

Breast - Mammary Tissue

Cells - Cultured fibroblasts

Cells - EBV - transformed lymphocytes

Cervix - Ectocervix

Cervix - Endocervix

Colon - Sigmoid

Colon - Transverse

Esophagus - Gastroesophageal Junction

Esophagus - Mucosa

Esophagus - Muscularis

Fallopian Tube

Heart - Atrial Appendage

Heart - Left Ventricle

Kidney - Cortex

Kidney - Medulla

Liver

Lung

Minor Salivary Gland

Muscle - Skeletal

Nerve - Tibial

Ovary

Pancreas

Pituitary

Prostate

Skin - Not Sun Exposed

Skin - Sun Exposed

Small Intestine - Terminal Ileum

Spleen

Stomach

Testis

Thyroid

Uterus

Vagina

Whole Blood

Protein levels (Protein atlas)

Not detected

Low

Medium

High

References

Pubmed ID	Year	Title	Citations
23378026	2013	Vertebrate Spt2 is a novel nucleolar histone chaperone that assists in ribosomal DNA transcription.	16
23378026	2013	Vertebrate Spt2 is a novel nucleolar histone chaperone that assists in ribosomal DNA transcription.	16
25755761	2015	Sex-specific association of the SPTY2D1 rs7934205 polymorphism and serum lipid levels.	9
25755761	2015	Sex-specific association of the SPTY2D1 rs7934205 polymorphism and serum lipid levels.	9
26288249	2015	Variability of Gene Expression Identifies Transcriptional Regulators of Early Human Embryonic Development.	25
26288249	2015	Variability of Gene Expression Identifies Transcriptional Regulators of Early Human Embryonic Development.	25
26722495	2015	Association of the SPT2 chromatin protein domain containing 1 gene rs17579600 polymorphism and serum lipid traits.	3
26722495	2015	Association of the SPT2 chromatin protein domain containing 1 gene rs17579600 polymorphism and serum lipid traits.	3
35691597	2022	The role of histone chaperone spty2d1 in human colorectal cancer.	1
35691597	2022	The role of histone chaperone spty2d1 in human colorectal cancer.	1

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Citation

Dessen P

SPTY2D1 (SPT2 chromatin protein domain containing 1)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/74221