TMCO5A (transmembrane and coiled-coil domains 5A)

2014-11-01  

Identity

HGNC
TMCO5A
LOCATION
15q14
LOCUSID
145942
ALIAS
TMCO5
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 145942
HGNC: 28558
Ensembl: ENSG00000166069

Variants:

dbSNP: 145942
ClinVar: 145942
TCGA: ENSG00000166069
COSMIC: TMCO5A

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000166069ENST00000319669Q8N6Q1
ENSG00000166069ENST00000319669A0A024R9I9
ENSG00000166069ENST00000558148H0YLW5
ENSG00000166069ENST00000558158H0YL40
ENSG00000166069ENST00000558625H0YLN2
ENSG00000166069ENST00000559502Q8N6Q1
ENSG00000166069ENST00000560653H0YMD4
ENSG00000166069ENST00000560841H0YLD3

Expression (GTEx)

0
10
20
30
40
50
60
70
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
215770132011Progression-free survival in ovarian cancer is reflected in epigenetic DNA methylation profiles.29
215770132011Progression-free survival in ovarian cancer is reflected in epigenetic DNA methylation profiles.29
196798472009Multi-ethnic genetic association study of carotid intima-media thickness using a targeted cardiovascular SNP microarray.13
196798472009Multi-ethnic genetic association study of carotid intima-media thickness using a targeted cardiovascular SNP microarray.13

Citation

Dessen P

TMCO5A (transmembrane and coiled-coil domains 5A)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/74755/tmco5a-(transmembrane-and-coiled-coil-domains-5a)