Abstract
Review on POLD1, with data on DNA, on the protein encoded, and where the gene is implicated.
DNA/RNA
Description
POLD1 gene is 33.7 kb long and composed of 1 non-coding exon followed by 25 coding exons and one last exon with both coding and 3 UTR regions.
Transcription
The length of the transcript is 3444 bp and results in a protein of 1107 residues.
Pseudogene
There is a pseudogene in chr 6q13 (LOC100422453).
Proteins
Description
The POLD1 gene encodes for p125 which is one of the four subunits that form Polδ (DNA polymerase delta) together with POLD2, POLD3 and POLD4 genes. This protein is one of the main DNA replicases in eukaryotes and is responsible of the replication of the lagging strand. POLD1 contains both the catalytic active site and the proofreading exonuclease domain (residues 245-571). Accordingly, the POLD1 gene confers to Polδ both replicative and 3 to 5 repair capabilities for the new strand.
Expression
Broadly expressed.
Localisation
Nuclear.
Function
Polδ is responsible of the polymerization of the lagging strand during DNA replication in yeast and humans. It also possesses 3 to 5 exonuclease capability to repair missincorporated nucleotides during DNA replication. Polδ is also involved in DNA repair pathways such as mismatch repair (MMR), base excision repair (BER), nucleotide excision repair (NER) or double-strand break repair.
Mutations
Germinal
A few missense germline mutations in the proofreading domain of POLD1 have been shown to be pathogenic such as D316G/H, P327L, R409W, L474P or S478N. These are extremely rare in the population and affect the exonuclease repair of Polδ hence resulting in a mutation rate increase of about 100-fold. Accordingly, these tumours are usually called ultramutated.
Somatic
Although some somatic mutations in POLD1 have been reported for different tumour types, most of them are very likely to be passengers. They are usually found either in non-hypermutated tumours or in hypermutated tumours due to mismatch repair deficiency. So far no POLD1 somatic mutation has clearly been shown to be pathogenic.
Implicated in
Entity name
Proofreading-associated polyposis (PPAP)
Disease
Autosomal dominant disease with high risk for endometrial carcinoma and/or colorectal adenoma or colorectal carcinoma due to germline mutations in POLE or POLD1 genes.
Prognosis
Probably good prognosis in early disease. Although not formally proven in POLD1 tumours, hypermutated tumours due to analog mutations in the polymerase gene POLE that shows a similar phenotype are highly immunogenic resulting in better prognosis. In addition, these patients are likely to respond to immune checkpoint inhibition.
Other Information
Locus ID:
NCBI: 5424
MIM: 174761
HGNC: 9175
Ensembl: ENSG00000062822
Variants:
dbSNP: 5424
ClinVar: 5424
TCGA: ENSG00000062822
COSMIC: POLD1
RNA/Proteins
Expression (GTEx)
Pathways
Protein levels (Protein atlas)
References
| Pubmed ID | Year | Title | Citations |
|---|---|---|---|
| 38219146 | 2024 | DNA polymerase ε and δ variants drive mutagenesis in polypurine tracts in human tumors. | 1 |
| 38231514 | 2024 | Race, Prevalence of POLE and POLD1 Alterations, and Survival Among Patients With Endometrial Cancer. | 0 |
| 38423601 | 2024 | POLD1 Is Required for Cell Cycle Progression by Overcoming DNA Damage in Malignant Pleural Mesothelioma. | 1 |
| 38658779 | 2024 | Discovery of recessive effect of human polymerase δ proofreading deficiency through mutational analysis of POLD1-mutated normal and cancer cells. | 1 |
| 38219146 | 2024 | DNA polymerase ε and δ variants drive mutagenesis in polypurine tracts in human tumors. | 1 |
| 38231514 | 2024 | Race, Prevalence of POLE and POLD1 Alterations, and Survival Among Patients With Endometrial Cancer. | 0 |
| 38423601 | 2024 | POLD1 Is Required for Cell Cycle Progression by Overcoming DNA Damage in Malignant Pleural Mesothelioma. | 1 |
| 38658779 | 2024 | Discovery of recessive effect of human polymerase δ proofreading deficiency through mutational analysis of POLD1-mutated normal and cancer cells. | 1 |
| 37105989 | 2023 | DNA polymerase POLD1 promotes proliferation and metastasis of bladder cancer by stabilizing MYC. | 3 |
| 37107532 | 2023 | DNA Polymerase Delta Exhibits Altered Catalytic Properties on Lysine Acetylation. | 0 |
| 37990341 | 2023 | Rare germline variants in POLE and POLD1 encoding the catalytic subunits of DNA polymerases ε and δ in glioma families. | 0 |
| 37105989 | 2023 | DNA polymerase POLD1 promotes proliferation and metastasis of bladder cancer by stabilizing MYC. | 3 |
| 37107532 | 2023 | DNA Polymerase Delta Exhibits Altered Catalytic Properties on Lysine Acetylation. | 0 |
| 37990341 | 2023 | Rare germline variants in POLE and POLD1 encoding the catalytic subunits of DNA polymerases ε and δ in glioma families. | 0 |
| 34285382 | 2022 | Solving the enigma of POLD1 p.V295M as a potential cause of increased cancer risk. | 2 |
Citation
Enric Domingo
POLD1 (DNA polymerase delta 1, catalytic subunit)
Atlas Genet Cytogenet Oncol Haematol. 2018-05-01
Online version: http://atlasgeneticsoncology.org/gene/80665/pold1-(dna-polymerase-delta-1-catalytic-subunit)
