t(12;15)(p13;q25) ETV6/NTRK3 in Hematological malignancies

Abstract

Review on t(12;15)(p13;q25), with data on clinics, and the genes involved.

Keywords

Chromosome 12; Chromosome 15; ETV6; NTRK3; Chronic eosinophilic leukemia; Acute myeloid leukemia; B-Lineage Acute lymphoblastic leukemia; Secretory ductal breast carcinoma; Congenital mesoblastic nephroma; Congenital/infantile fibrosarcoma; Papillary thyroid carcinoma; Inflammatory myofibroblastic sarcoma; Secretory carcinoma of salivary glands (mammary analogue); atypical Spitz tumors.

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Identity

ICD-Topo	C420,C421,C424
ICD-Morpho	9964/3 Chronic eosinophilic leukaemia, NOS
ICD-Morpho	9874/3 AML with maturation
ICD-Morpho	9872/3 AML with minimal differentiation; Myeloid sarcoma
ICD-Morpho	9811/3 B lymphoblastic leukaemia/lymphoma, NOS
Atlas_Id	1347
Note	The t(12;15)(p13;q25) ETV6/NTRK3 is also found in: Secretory ductal breast carcinoma; Congenital mesoblastic nephroma; Congenital/infantile fibrosarcoma; Papillary thyroid carcinoma (PTC), especially so in radiation-associated PTCs; ALK-negative inflammatory myofibroblastic sarcoma; Secretory carcinoma of salivary glands (mammary analogue); atypical Spitz tumors, and rare other conditions.

Clinics and Pathology

Disease	Myeloid leukemias and acute lymphoblastic leukemia (ALL).
Phenotype / cell stem origin	Chronic eosinophilic leukemia (one case), acute myeloblastic leukemia with maturation (FAB type M2) (one case), acute myeloblastic leukemia with minimal differentiation (FAB type M0) (one case), and B-lineage acute lymphoblastic leukemia (three cases).
Epidemiology	A chronic eosinophilic leukemia was diagnosed in a 82-year old female patient with a previous history of breast and pancreatic carcinomas (Forghieri et al., 2011). A M2-AML was diagnosed in a 52-yr old female patient. The patient died 5 months after the onset of the leukaemia (Eguchi et al., 1999). A M0-AML was found in a 55-yr old male patient who died after a short period of supportive care (Kralik et al., 2011). Three cases of B-cell ALL were diagnosed. There was an adolescent boy and a 26-yr old male patient (Roberts et al., 2014; Gu et al., 2016; Reshmi et al., 2017).
Cytogenetics	There was a monosomy 7 in two of the three documented cases (Forghieri et al., 2011; Kralik et al., 2011), and a trisomy 8 in 2 cases as well (Eguchi et al., 1999; Forghieri et al., 2011). The lymphoid cases were not documented.

Genes involved and Proteins

Gene Name	ETV6 (ets variant 6)
Location	12p13.2
Protein	ETV6 is a strong transcriptional repressor. ETV6 is a 452 amino acid member of the ETS family (signal-dependent transcriptional regulators, mediating cell proliferation, differentiation and tumorigenesis. The ETV6 protein contains two major domains, the HLH (helix-loop-helix) and ETS domains. The N-term HLH domain, also referred to as the pointed or sterile alpha motif domain, is responsible for hetero- and homodimerization. The C-term ETS domain is responsible for sequence specific DNA-binding and protein-protein interaction. A central domain, called internal domain, is involved in the recruitment of a repression complex includingNCOR1, NCOR2, and SIN3A (Braekeleer et al., 2014 http://atlasgeneticsoncology.org//Genes/ETV6ID38.html ).

Gene Name	NTRK3 (neurotrophic tyrosine kinase, receptor, type 3)
Location	15q25.3
Protein	NTRK3 is a transmembrane receptor tyrosine kinase which triggers PI3K/AKT, RAS/RAF/MAPK, and PLCG pathways. NTRK3 is a 839 amino acid protein with a N-term extra-cellular ligand binding domain, a transmembrane domain, and a C-term intracellular tyrosine kinase domain. Ligand for NTRK3 is NTF3 (neurotrophin 3) (Knezevich 2004 http://atlasgeneticsoncology.org/Genes/NTRK3ID433.html ).

Result of the chromosomal anomaly

Hybrid gene

Description

In most cases, ETV6 exon 5 was fused to NTRK3 exon 15 (Forghieri et al., 2011; Roberts et al., 2014). In one case ETV6 exon 4 was fused to NTRK3 exon 15 (Eguchi: et al., 1999), and in another case, fusion transcripts contain ETV6 exons 1 through 5 fused to NTRK3 exons 13b and 14b or NTRK3 exons 13 through 18 (Kralik et al., 2011). In solid tumors, ETV6 exon 5 - NTRK3 exon 15 fusion is the most frequent: The fusion was exon 4 - exon 14 in most papillary thyroid carcinoma ceases, but one exon 5 - exon 14 fusion case (Leeman-Neill et al., 2014), and exon 5 - exon 15 in: secretory ductal breast carcinoma (Tognon et al., 2002), congenital mesoblastic nephroma (Knezevich et al., 1998; Rubin et al., 1998; Argani et al., 2000; Ramachandran et al., 2001; Watanabe et al., 2002; Henno et al., 2003; Anderson et al., 2006; Bayindir et al., 2009), secretory carcinoma of salivary glands (mammary analogue) (Skálová et al., 2010; Skálová et al., 2014), atypical Spitz tumors (Yeh et al., 2016), and also in a case of colon adenocarcinoma (Seshagiri et al., 2012). The classical exon 5 - exon 15 fusion is also found in congenital/infantile fibrosarcoma (Knezevich et al., 1998; Rubin et al., 1998; Bourgeois et al., 2000; Punnett et al., 2000; Argani et al., 2001; Dubus et al., 2001; Sheng et al., 2001; Miura et al., 2002; McCahon et al., 2003; Ramphal et al., 2003; Nonaka and Sun, 2004; Himori et al., 2005), but, also, a fusion NTRK3 exon 14 - ETV6 exon 6 was found in one case (Dubus et al., 2001).

Fusion Protein

Description	The SAM-PNT (sterile alpha motif- pointed) domain of ETV6 is fused to the PTK (Protein Tyrosine Kinase domain) of NTRK3.
Oncogenesis	It leads to dimerization, and induction of CCND1 (cyclin D1) and increased cell cycle progression. ETV6/NTRK3 also leads to constitutive activation of the PI3K/AKT, RAS/RAF/MAPK, and PLCG pathways (Lannon and Sorensen, 2005).

To be noted

Additional cases are needed to delineate the epidemiology of this rare entity: you are welcome to submit a paper to our new Case Report section.

Bibliography

Expression of ETV6-NTRK in classical, cellular and mixed subtypes of congenital mesoblastic nephroma

Anderson J, Gibson S, Sebire NJ

Histopathology 2006 May;48(6):748-53

PMID 16681692

Reduced sensitivity of paraffin-based RT-PCR assays for ETV6-NTRK3 fusion transcripts in morphologically defined infantile fibrosarcoma

Argani P, Fritsch MK, Shuster AE, Perlman EJ, Coffin CM

Am J Surg Pathol 2001 Nov;25(11):1461-4

PMID 11684968

Cellular mesoblastic nephroma (infantile renal fibrosarcoma): institutional review of the clinical, diagnostic imaging, and pathologic features of a distinctive neoplasm of infancy

Bayindir P, Guillerman RP, Hicks MJ, Chintagumpala MM

Pediatr Radiol 2009 Oct;39(10):1066-74

PMID 19629465

Molecular detection of the ETV6-NTRK3 gene fusion differentiates congenital fibrosarcoma from other childhood spindle cell tumors

Bourgeois JM, Knezevich SR, Mathers JA, Sorensen PH

Am J Surg Pathol 2000 Jul;24(7):937-46

PMID 10895816

Secretory carcinoma of the breast: a genetically defined carcinoma entity

Diallo R, Tognon C, Knezevich SR, Sorensen P, Poremba C

Verh Dtsch Ges Pathol 2003;87:193-203

PMID 16888913

The detection of Tel-TrkC chimeric transcripts is more specific than TrkC immunoreactivity for the diagnosis of congenital fibrosarcoma

Dubus P, Coindre JM, Groppi A, Jouan H, Ferrer J, Cohen C, Rivel J, Copin MC, Leroy JP, de Muret A, Merlio JP

J Pathol 2001 Jan;193(1):88-94

PMID 11169520

Fusion of ETV6 to neurotrophin-3 receptor TRKC in acute myeloid leukemia with t(12;15)(p13;q25)

Eguchi M, Eguchi-Ishimae M, Tojo A, Morishita K, Suzuki K, Sato Y, Kudoh S, Tanaka K, Setoyama M, Nagamura F, Asano S, Kamada N

Blood 1999 Feb 15;93(4):1355-63

PMID 9949179

Chronic eosinophilic leukaemia with ETV6-NTRK3 fusion transcript in an elderly patient affected with pancreatic carcinoma

Forghieri F, Morselli M, Potenza L, Maccaferri M, Pedrazzi L, Paolini A, Bonacorsi G, Artusi T, Giacobbi F, Corradini G, Barozzi P, Zucchini P, Marasca R, Narni F, Crescenzi B, Mecucci C, Falini B, Torelli G, Luppi M

Eur J Haematol 2011 Apr;86(4):352-5

PMID 21226763

Genomic analyses identify recurrent MEF2D fusions in acute lymphoblastic leukaemia

Gu Z, Churchman M, Roberts K, Li Y, Liu Y, Harvey RC, McCastlain K, Reshmi SC, Payne-Turner D, Iacobucci I, Shao Y, Chen IM, Valentine M, Pei D, Mungall KL, Mungall AJ, Ma Y, Moore R, Marra M, Stonerock E, Gastier-Foster JM, Devidas M, Dai Y, Wood B, Borowitz M, Larsen EE, Maloney K, Mattano LA Jr, Angiolillo A, Salzer WL, Burke MJ, Gianni F, Spinelli O, Radich JP, Minden MD, Moorman AV, Patel B, Fielding AK, Rowe JM, Luger SM, Bhatia R, Aldoss I, Forman SJ, Kohlschmidt J, Mrózek K, Marcucci G, Bloomfield CD, Stock W, Kornblau S, Kantarjian HM, Konopleva M, Paietta E, Willman CL, Loh ML, Hunger SP, Mullighan CG

Nat Commun 2016 Nov 8;7:13331

PMID 27824051

Cellular mesoblastic nephroma: morphologic, cytogenetic and molecular links with congenital fibrosarcoma

Henno S, Loeuillet L, Henry C, D'Hervé D, Azzis O, Ferrer J, Poulain P, Babut JM, Merlio JP, Jouan H, Dubus P

Pathol Res Pract 2003;199(1):35-40

PMID 12650516

Infantile fibrosarcoma of thigh--a case report

Himori K, Hatori M, Watanabe M, Moriya T, Ogose A, Hashimoto H, Kokubun S

Ups J Med Sci 2005;110(1):85-93

PMID 15801689

A novel ETV6-NTRK3 gene fusion in congenital fibrosarcoma

Knezevich SR, McFadden DE, Tao W, Lim JF, Sorensen PH

Nat Genet 1998 Feb;18(2):184-7

Characterization of a newly identified ETV6-NTRK3 fusion transcript in acute myeloid leukemia

Kralik JM, Kranewitter W, Boesmueller H, Marschon R, Tschurtschenthaler G, Rumpold H, Wiesinger K, Erdel M, Petzer AL, Webersinke G

Diagn Pathol 2011 Mar 15;6:19

PMID 21401966

ETV6-NTRK3 is a common chromosomal rearrangement in radiation-associated thyroid cancer

Leeman-Neill RJ, Kelly LM, Liu P, Brenner AV, Little MP, Bogdanova TI, Evdokimova VN, Hatch M, Zurnadzy LY, Nikiforova MN, Yue NJ, Zhang M, Mabuchi K, Tronko MD, Nikiforov YE

Cancer 2014 Mar 15;120(6):799-807

PMID 24327398

Non-resectable congenital tumors with the ETV6-NTRK3 gene fusion are highly responsive to chemotherapy

McCahon E, Sorensen PH, Davis JH, Rogers PC, Schultz KR

Med Pediatr Oncol 2003 May;40(5):288-92

PMID 12652616

Regression of congenital fibrosarcoma to hemangiomatous remnant with histological and genetic findings

Miura K, Han G, Sano M, Tsutsui Y

Pathol Int 2002 Sep;52(9):612-8

PMID 12406191

Congenital fibrosarcoma with metastasis in a fetus

Nonaka D, Sun CC

Pediatr Dev Pathol 2004 Mar-Apr;7(2):187-91

PMID 15022058

Retroperitoneal infantile fibrosarcoma: clinical, molecular, and therapeutic aspects of an unusual tumor

Ramphal R, Manson D, Viero S, Zielenska M, Gerstle T, Pappo A

Pediatr Hematol Oncol 2003 Dec;20(8):635-42

PMID 14578034

Targetable kinase gene fusions in high-risk B-ALL: a study from the Children's Oncology Group

Reshmi SC, Harvey RC, Roberts KG, Stonerock E, Smith A, Jenkins H, Chen IM, Valentine M, Liu Y, Li Y, Shao Y, Easton J, Payne-Turner D, Gu Z, Tran TH, Nguyen JV, Devidas M, Dai Y, Heerema NA, Carroll AJ 3rd, Raetz EA, Borowitz MJ, Wood BL, Angiolillo AL, Burke MJ, Salzer WL, Zweidler-McKay PA, Rabin KR, Carroll WL, Zhang J, Loh ML, Mullighan CG, Willman CL, Gastier-Foster JM, Hunger SP

Blood 2017 Jun 22;129(25):3352-3361

PMID 28408464

Targetable kinase-activating lesions in Ph-like acute lymphoblastic leukemia

Roberts KG, Li Y, Payne-Turner D, Harvey RC, Yang YL, Pei D, McCastlain K, Ding L, Lu C, Song G, Ma J, Becksfort J, Rusch M, Chen SC, Easton J, Cheng J, Boggs K, Santiago-Morales N, Iacobucci I, Fulton RS, Wen J, Valentine M, Cheng C, Paugh SW, Devidas M, Chen IM, Reshmi S, Smith A, Hedlund E, Gupta P, Nagahawatte P, Wu G, Chen X, Yergeau D, Vadodaria B, Mulder H, Winick NJ, Larsen EC, Carroll WL, Heerema NA, Carroll AJ, Grayson G, Tasian SK, Moore AS, Keller F, Frei-Jones M, Whitlock JA, Raetz EA, White DL, Hughes TP, Guidry Auvil JM, Smith MA, Marcucci G, Bloomfield CD, Mrózek K, Kohlschmidt J, Stock W, Kornblau SM, Konopleva M, Paietta E, Pui CH, Jeha S, Relling MV, Evans WE, Gerhard DS, Gastier-Foster JM, Mardis E, Wilson RK, Loh ML, Downing JR, Hunger SP, Willman CL, Zhang J, Mullighan CG

N Engl J Med 2014 Sep 11;371(11):1005-15

PMID 25207766

Congenital mesoblastic nephroma t(12;15) is associated with ETV6-NTRK3 gene fusion: cytogenetic and molecular relationship to congenital (infantile) fibrosarcoma

Rubin BP, Chen CJ, Morgan TW, Xiao S, Grier HE, Kozakewich HP, Perez-Atayde AR, Fletcher JA

Am J Pathol 1998 Nov;153(5):1451-8

PMID 9811336

Recurrent R-spondin fusions in colon cancer

Seshagiri S, Stawiski EW, Durinck S, Modrusan Z, Storm EE, Conboy CB, Chaudhuri S, Guan Y, Janakiraman V, Jaiswal BS, Guillory J, Ha C, Dijkgraaf GJ, Stinson J, Gnad F, Huntley MA, Degenhardt JD, Haverty PM, Bourgon R, Wang W, Koeppen H, Gentleman R, Starr TK, Zhang Z, Largaespada DA, Wu TD, de Sauvage FJ

Nature 2012 Aug 30;488(7413):660-4

PMID 22895193

Congenital-infantile fibrosarcoma

Sheng WQ, Hisaoka M, Okamoto S, Tanaka A, Meis-Kindblom JM, Kindblom LG, Ishida T, Nojima T, Hashimoto H

A clinicopathologic study of 10 cases and molecular detection of the ETV6-NTRK3 fusion transcripts using paraffin-embedded tissues Am J Clin Pathol

PMID 11242790

Mammary analogue secretory carcinoma of salivary glands with high-grade transformation: report of 3 cases with the ETV6-NTRK3 gene fusion and analysis of TP53, β-catenin, EGFR, and CCND1 genes

Skálová A, Vanecek T, Majewska H, Laco J, Grossmann P, Simpson RH, Hauer L, Andrle P, Hosticka L, Branžovský J, Michal M

Am J Surg Pathol 2014 Jan;38(1):23-33

PMID 24145651

Expression of the ETV6-NTRK3 gene fusion as a primary event in human secretory breast carcinoma

Tognon C, Knezevich SR, Huntsman D, Roskelley CD, Melnyk N, Mathers JA, Becker L, Carneiro F, MacPherson N, Horsman D, Poremba C, Sorensen PH

Cancer Cell 2002 Nov;2(5):367-76

PMID 12450792

Cryptic t(12;15)(p13;q26) producing the ETV6-NTRK3 fusion gene and no loss of IGF2 imprinting in congenital mesoblastic nephroma with trisomy 11: fluorescence in situ hybridization and IGF2 allelic expression analysis

Watanabe N, Kobayashi H, Hirama T, Kikuta A, Koizumi S, Tsuru T, Kaneko Y

Cancer Genet Cytogenet 2002 Jul 1;136(1):10-6

PMID 12165445

NTRK3 kinase fusions in Spitz tumours

Yeh I, Tee MK, Botton T, Shain AH, Sparatta AJ, Gagnon A, Vemula SS, Garrido MC, Nakamaru K, Isoyama T, McCalmont TH, LeBoit PE, Bastian BC

J Pathol 2016 Nov;240(3):282-290

PMID 27477320

Citation

This paper should be referenced as such :

Jean-Loup Huret

t(12;15)(p13;q25) ETV6/NTRK3 in Hematological malignancies

Atlas Genet Cytogenet Oncol Haematol. 2020;24(9):346-349.

Free journal version : [ pdf ]   [ DOI ]

On line version : http://AtlasGeneticsOncology.org/Anomalies/t1215p13q25ID1347.html

History of this paper:

Huret, JL. t(12;15)(p13;q25). Atlas Genet Cytogenet Oncol Haematol. 2009;13(2):130-131.

http://documents.irevues.inist.fr/bitstream/handle/2042/44405/01-2008-t1215p13q25ID1347.pdf

Other genes implicated (Data extracted from papers in the Atlas) [ 1 ]

Genes

ETV6

Translocations implicated (Data extracted from papers in the Atlas)

	t(12;15)(p13;q25) ETV6/NTRK3

External links

Mitelman database	t(12;15)(p13;q25)
arrayMap (UZH-SIB Zurich)	Morph ( 9964/3) -   [auto + random 100 samples .. if exist ]   [tabulated segments]
arrayMap (UZH-SIB Zurich)	Morph ( 9874/3) -   [auto + random 100 samples .. if exist ]   [tabulated segments]
arrayMap (UZH-SIB Zurich)	Morph ( 9872/3) -   [auto + random 100 samples .. if exist ]   [tabulated segments]
arrayMap (UZH-SIB Zurich)	Morph ( 9811/3) -   [auto + random 100 samples .. if exist ]   [tabulated segments]

REVIEW articles	automatic search in PubMed
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