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AKAP12 A kinase (PRKA) anchor protein 12

Identity

Other namesGravin
SSeCKS
AKAP250
DKFZp686M0430
DKFZp686O0331
HGNC (Hugo) AKAP12
Location 6q25
Location_base_pair Starts at 151602827 and ends at 151721385 bp from pter ( according to hg18-Mar_2006)  [Mapping]
 
  AKAP12 (6q24-25.2) in normal cells probed with a about 5Kb human AKAP12 probe. Courtesy of Irwin Gelman; adapted from Xia et al., Cancer Res.61:5644-5651, 2001.

DNA/RNA

Note The AKAP12 gene is strongly conserved from fish to humans, including syntenic regions conserved in the mouse (chrom. 10) and rat (chrom. 1).
 
  Human and mouse cells have similar exon/intron usage and spacing. AKAP12 has three independent promoters, alpha, beta, and gamma. The gamma promoter is active only in the testes while the alpha and beta are co-active in most cells and tissues studied. Exons 1A1 and 1A2 combine to then splice to a common splice acceptor on Exon 2 used by Exon 1B. Exons 1A1 and 1A2 produce the N-terminal 103 amino acids of "AKAP12alpha" whereas Exon 1B encodes the N-terminal 8 amino acids of "AKAP12beta"; the remaining amino acids are encoded in Exon 2. "AKAP12gamma" is encoded by a read-through transcript starting in the intron upstream of Exon 2, utilizing an in-frame ATG in Exon 2. Therefore, the alpha, beta, and gamma transcripts encode proteins that only differ in their N-termini.
Pseudogene None.

Protein

 
  A: Except for testes, most cells express four major isoforms of AKAP12 protein. The 305 kDa isoforms is the myristylated AKAP12alpha whereas the 287 kDa isoforms is AKAP12beta. The 250 kDa and 43 kDa isoforms are proteolytic cleavage products common to the AKAP12alpha and beta isoforms.
B: Human AKAP12alpha encodes a 1,780 amino acids full-length protein. The first about 1,000 amino acids of human and rodent AKAP12 share 83% identity followed by about 600 amino acids with less than 20% identity. The N-terminal homology domain (green) shows about 40% identity to the Xgl (Xenopus gravin-like) gene in Xenopus. Both human and rodent AKAP12 share a shorter C-terminal domain containing the PKA-RII binding (AKAP) domain (green box in human AKAP12).
Expression AKAP12 isoforms are expressed in most tissue and organ types, with high expression levels in the testes, ovary, brain, lung and heart. Most mesenchyme, smooth muscle and some epithelial cells (breast, prostate, lung, ovary) express significant AKAP12 levels. Lower levels of AKAP12 are found in endothelial cells, although express in these cells is usually associated with wounding and/or inflammation.
Localisation Most cell types display a cortical cytoskeletal staining pattern for AKAP12, with enrichment at the plasma membrane (presumably, the myristylated isoforms) and in the perinucleus. However, some staining has been observed in cell nuclei, probably directed by 4 SV40 Tag-like nuclear localization signals (NLS) found in the N-terminal third of the protein.
Function 1) Facilitates the sensitization/resensitization reaction of beta-adrenergic receptors.
2) Scaffolds protein kinase (PK) A and PKC.
3) Autoantigen in some cases of myasthenia gravis.
4) Anti-angiogenic factor. The rodent orthologue has been shown to inhibit brain angiogenesis and induce the blood-brain barrier, and to inhibit VEGF-mediated metastasis. 5) Potential tumor suppressor. The rodent orthologue has been shown to suppress Src- and Ras-induced oncogenic proliferation in vitro and metastatic potential in vivo.
Homology Southern blotting analysis as well as analysis of sequenced genomes indicates that vertebrates encode single AKAP12 orthologues, with no gene family members. Thus, the protein diversity of this gene stems from promoter choice, alternative splicing, proteolytic maturation and post-translational modification. AKAP12 has limited sequence homology based on short domains. For example, the C-terminal AKAP domain is homologous to the analogous domain in AKP79. Also, AKAP12 shares some so-called MARCKS protein-like effector domains- positively charged stretches of amino acids involved in plasma membrane targeting.

Mutations

Note No known mutations are associated with AKAP12. However, there are at least 539 single nucleotide polymorphisms (SNP) as described.

External links

Nomenclature
HGNC (Hugo)AKAP12   370
Entrez_Gene (NCBI)AKAP12  9590  A kinase (PRKA) anchor protein 12
Cards
AtlasAKAP12ID607ch6q25
GeneCards (Weizmann)AKAP12
Ensembl (Hinxton)ENSG00000131016 [Gene_View]  AKAP12 [Vega]
AceView (NCBI)AKAP12
Genatlas (Paris)AKAP12
euGene (Indiana)9590
SOURCE (Stanford)NM_005100 NM_144497
Gene Expression (Array Express) ENSG00000131016
Genomic and cartography
GoldenPath (UCSC)AKAP12  -  6q25   chr6:151602827-151721385 +  6q24-q25   [Description]    (hg18-Mar_2006)
EnsemblAKAP12 - 6q24-q25 [CytoView]
Mapping of homologs : NCBIAKAP12 [Mapview]
OMIM604698   
Gene and transcription
Gene : Genbank (Entrez)AB003476 AB210003 AF001504 AF086250 AK024598
Reference sequence (RefSeq transcript) :SRSNM_005100 NM_144497
Reference transcript : EntrezNM_005100 NM_144497
RefSeq genomic : SRSAC_000049 AC_000138 NC_000006 NT_025741 NW_001838990 NW_923184
RefSeq genomic : EntrezAC_000049 AC_000138 NC_000006 NT_025741 NW_001838990 NW_923184
Consensus coding sequences : CCDS NCBIAKAP12
Cluster EST : UnigeneHs.371240 [ SRS ] Hs.371240 [ NCBI ]
Alternative Splicing : Fast-db (Paris)16810
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ02952 (SRS) Q02952 (Expasy) Q02952 (Uniprot)
With graphics : InterProQ02952
Splice isoforms : VarSplice FASTAQ02952(VarSplice FASTA)
Domains : Interpro (SRS)Pkinase-A_anch_WSK-motif    RII_binding_1   
Domains : Interpro (EBI)Pkinase-A_anch_WSK-motif    RII_binding_1   
Related proteins : CluSTrQ02952
Domain families : Pfam SRSRII_binding_1 (PF10522)    WSK (PF03832)   
Domain families : Pfam SangerRII_binding_1 (PF10522)    WSK (PF03832)   
Domain families : Pfam NCBIpfam10522    pfam03832   
Blocks (Seattle)Q02952
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD05263
Protein Interaction databases
DIP (DOE-UCLA)Q02952
IntAct (EBI)Q02952
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIAKAP12
SNP : GeneSNP UtahAKAP12
SNP : HGBaseAKAP12
Genetic variants : HAPMAPAKAP12
Somatic Mutations in Cancer : COSMICAKAP12 
Mutations and Diseases : HGMDAKAP12
Hereditary diseases : OMIM604698   
Hereditary diseases : GENETests604698   
Diseases : Genetic AssociationAKAP12
General knowledge
Homologs : HomoloGeneAKAP12
Homology/Alignments : Family Browser UCSCAKAP12
Phylogenetic Trees/Animal Genes : TreeFamAKAP12
Chemical/Protein Interactions : CTD9590
Keywords Ontology : AmiGOnucleus  cytoplasm  cytoskeleton  plasma membrane  cell cortex  protein targeting  signal transduction  G-protein coupled receptor protein signaling pathway  protein kinase A binding  
Keywords Ontology : EGO-EBInucleus  cytoplasm  cytoskeleton  plasma membrane  cell cortex  protein targeting  signal transduction  G-protein coupled receptor protein signaling pathway  protein kinase A binding  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesAKAP12 Related clones (RZPD - Berlin)
Literature
PubMed35 Pubmed reference(s) in Entrez
PubGeneAKAP12

Bibliography

Molecular cloning and preliminary characterization of a novel cytoplasmic antigen recognized by myasthenia gravis sera.
Gordon T, Grove B, Loftus JC, O'Toole T, McMillan R, Lindstrom J, Ginsberg MH
The Journal of clinical investigation. 1992 ; 90 (3) : 992-999.
PMID 1522245
 
Gravin, an autoantigen recognized by serum from myasthenia gravis patients, is a kinase scaffold protein.
Nauert JB, Klauck TM, Langeberg LK, Scott JD
Current biology : CB. 1997 ; 7 (1) : 52-62.
PMID 9000000
 
Dynamic complexes of beta2-adrenergic receptors with protein kinases and phosphatases and the role of gravin.
Shih M, Lin F, Scott JD, Wang HY, Malbon CC
The Journal of biological chemistry. 1999 ; 274 (3) : 1588-1595.
PMID 9880537
 
The scaffold protein gravin (cAMP-dependent protein kinase-anchoring protein 250) binds the beta 2-adrenergic receptor via the receptor cytoplasmic Arg-329 to Leu-413 domain and provides a mobile scaffold during desensitization.
Fan G, Shumay E, Wang H, Malbon CC
The Journal of biological chemistry. 2001 ; 276 (26) : 24005-24014.
PMID 11309381
 
The role of SSeCKS/gravin/AKAP12 scaffolding proteins in the spaciotemporal control of signaling pathways in oncogenesis and development .
Gelman IH
Frontiers in bioscience : a journal and virtual library. 2002 ; 7 : d1782-d1797.
PMID 12133808
 
Low expression of the putative tumour suppressor gene gravin in chronic myeloid leukaemia, myelodysplastic syndromes and acute myeloid leukaemia.
Boultwood J, Pellagatti A, Watkins F, Campbell LJ, Esoof N, Cross NC, Eagleton H, Littlewood TJ, Fidler C, Wainscoat JS
British journal of haematology. 2004 ; 126 (4) : 508-511.
PMID 15287943
 
AKAP12/Gravin is inactivated by epigenetic mechanism in human gastric carcinoma and shows growth suppressor activity.
Choi MC, Jong HS, Kim TY, Song SH, Lee DS, Lee JW, Kim TY, Kim NK, Bang YJ
Oncogene. 2004 ; 23 (42) : 7095-7103.
PMID 15258566
 
Multiple promoters direct expression of three AKAP12 isoforms with distinct subcellular and tissue distribution profiles.
Streb JW, Kitchen CM, Gelman IH, Miano JM
The Journal of biological chemistry. 2004 ; 279 (53) : 56014-56023.
PMID 15496411
 
SSeCKS metastasis-suppressing activity in MatLyLu prostate cancer cells correlates with vascular endothelial growth factor inhibition.
Su B, Zheng Q, Vaughan MM, Bu Y, Gelman IH
Cancer research. 2006 ; 66 (11) : 5599-5607.
PMID 16740695
 
REVIEW articlesautomatic search in PubMed
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Contributor(s)

Written11-2006Irwin H Gelman

Citation

This paper should be referenced as such :
Gelman IH . AKAP12 A kinase (PRKA) anchor protein 12. Atlas Genet Cytogenet Oncol Haematol. November 2006 .
URL : http://AtlasGeneticsOncology.org/Genes/AKAP12ID607ch6q25.html

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indexed on : Sat Feb 27 10:52:14 CET 2010

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