DUSP6 (dual specificity phosphatase 6)

2011-09-01   Zhenfeng Zhang , Balazs Halmos 

Division of Hematology\\\/Oncology, Herbert Irving Comprehensive Cancer Center, New York Presbyterian Hospital-Columbia University Medical Center, New York, NY, USA

Identity

HGNC
LOCATION
12q21.33
LOCUSID
ALIAS
HH19,MKP3,PYST1
FUSION GENES

DNA/RNA

Atlas Image
The diagram depicts the structure of the DUSP6 gene (bottom) roughly aligned with its corresponding functional protein domains (middle and top). DUSP6 comprises a C-terminal catalytic domain and an N-terminal non-catalytic domain (middle). The 3 exons of DUSP6 (rectangles) are connected with lines representing introns.

Description

The human DUSP6 gene is located on chromosome 12q21.33 and consists of 3 exons. The full-length coding sequence of DUSP6 contains 1146 nucleotides. The functional phosphatase domain of DUSP6 is encoded by half of exon 2 and almost the entire sequence of exon 3.

Transcription

DUSP6 gene transcription can start from either the first ATG or alternatively the second ATG (Met14), and therefore two protein products are generated which usually demonstrate a double-band appearance in regular immunoblotting assays (Dowd et al., 1998; Zhang et al., 2010).

Proteins

Atlas Image
The diagram depicts the structural features of DUSP6. The highly conserved C-terminal domain of DUSP6 contains the canonical tyrosine/threonine-specific phosphatase signature sequence HCXXXXXR at the active site, where the cysteine acts as the essential enzymatic nucleophile and arginine interacts directly with the phosphate group on phosphotyrosine or phosphothreonine (Farooq et al., 2001). The amino-terminal domain of DUSP6 contains a specific arginine-rich kinase interaction motif (KIM) (Tárrega et al., 2005) and a leucine-rich nuclear export signal (NES) necessary and sufficient for nuclear export of the phosphatase (Karlsson et al., 2004).

Description

The full-length DUSP6 protein contains 381 amino acids and has a molecular weight of 44 kDa. DUSPs are characterized by a common structure comprising a C-terminal phosphatase domain that are defined by the active-site signature motif HCXXXXXR. The structure of DUSP proteins confers phosphatase activity for both phosphoserine/threonine and phosphotyrosine residues. An enzyme-dead DUSP6 expression construct can be generated via a 293 Cysteine to Serine/Glycine (C293S/G) point mutation (Wishart et al., 1995; Zhang et al., 2010; Zhou et al., 2006).

Expression

DUSP6 is expressed usually at low level in resting, nonstimulated cells in a variety of tissues and is induced as an early response gene after activation of the ERK-MAPK signaling pathway.

Localisation

DUSP6 is a cytoplasmic dual specificity protein phosphatase.

Function

Mitogen-activated protein kinases (MAPK) constitute a highly conserved family of kinases that relay information from extracellular signals to downstream effectors that control diverse cellular processes such as proliferation, differentiation, migration, survival and apoptosis (Wada and Penninger, 2004). A balance between the activities of upstream activators and various negative regulatory mechanisms of MAPK signaling, which terminate its activation, determines its biological outcomes. DUSP6 is a prototypical member of a subfamily of cytoplasmic MKPs, which includes DUSP7 and DUSP9 as well. These enzymes all display a high degree of substrate selectivity for ERK1 and ERK2 (Keyse, 2008). DUSP6 has been shown to act as a central feedback regulator attenuating ERK levels in developmental programs (Echevarria et al., 2005; Li et al., 2007). The cytoplasmic localization of DUSP6 is mediated by a chromosome region maintenance-1-dependent nuclear export pathway. DUSP6 appears to play a role in determining the subcellular localization of ERK by serving as a cytoplasmic anchor for ERK, thereby mediating a spatio-temporal mechanism of ERK signaling regulation. Cytoplasmic retention of ERK requires both a functional kinase interaction motif and nuclear export site. Defects of these feedback regulation steps are thought to contribute to ERK-MAPK related oncogenesis. An in vivo study has identified DUSP6 as a negative feedback regulator of fibroblast growth factor-stimulated ERK signaling during murine development (Li et al., 2007). Several in vitro studies have demonstrated that DUSP6 acts as a negative regulator of fibroblast growth factor receptor signaling and endothelial cell platelet-derived growth factor receptor signaling via termination of ERK activation (Ekerot et al., 2008; Jurek et al., 2009).

Homology

DUSP6 belongs to a subfamily of ten more closely related dual-specificity MAPK phosphatases (MKPs) within the larger cysteine-dependent dual specificity phosphatase (DUSP) family (Keyse, 2008). While DUSP1 (MKP-1), DUSP4 (MKP-2), and DUSP9 (MKP4) dephosphorylate both ERKs, p38 and JNK, the phosphatases DUSP5 (Hvh-3), DUSP6 (MKP-3), and DUSP7 (MKP-X) exclusively target ERK1/2 MAPKs (Keyse, 2008). The N-terminal domain of all DUSPs has two regions of homology with the Cdc25 cell cycle regulatory phosphatase. The more conserved catalytic domain within DUSPs contains an active site sequence related to the prototypic VH-1 phosphatase encoded by the vaccinia virus. Specificity of MKPs toward MAPKs relies on the KIM domain. Although each MKP targets different subsets of MAPKs, there is an overlap between their specificities (Bermudez et al., 2010).

Mutations

Note

Although DUSP6 has been implicated as a candidate tumor suppressor in several cancer setting, no mutations in the gene have been identified so far.

Implicated in

Entity name
Various cancers
Note
DUSP6 null mice demonstrate enhanced ERK1/2 phosphorylation leading to increased myocyte proliferation and cardiac hypercellularity (Maillet et al., 2008). DUSP6 has been identified as a potential novel tumor suppressor gene in pancreatic cancer since loss of DUSP6 expression might synergize with activating-mutated k-Ras resulting in increased activation of ERK1/2 MAP kinase and thus contribute to the development of the malignant and invasive phenotype in pancreatic cancer (Furukawa et al., 2003). Loss of DUSP6 expression caused by oxidative stress-mediated degradation was also noted in ovarian cancer and correlated with high ERK1/2 activity (Chan et al., 2008). DUSP6 has also been identified as one of only three genes which are uniquely expressed in myeloma cells harboring a constitutively active mutant N-ras gene and is also overexpressed in human melanoma cell lines with potent activating mutations in B-raf and in breast epithelial cells stably expressing H-Ras (Bloethner et al., 2005; Croonquist et al., 2003; Warmka et al., 2004), suggesting that the over-expression of DUSP6 seen in response to activating-mutated Ras or Raf might represent a compensatory increase in the negative feedback control of the ERK1/2 MAPK pathway, which lies downstream of these activated oncogenes. In support of this, the tetracycline-induced expression of a functional fusion protein between DUSP6 and green fluorescent protein in H-ras transformed fibroblasts following injection into nude mice resulted in a large delay in tumor emergence and growth as compared to the untreated control group (Marchetti et al., 2004 ). DUSP6 has been reported to be one of the most highly regulated genes in chronic myeloid leukemia cells upon imatinib treatment (Hakansson et al., 2008) and similarly DUSP6 is overexpressed upon inducible expression of the EGFRvIII oncogene in glioblastoma cells (Ramnarain et al., 2006). DUSP6 has also been demonstrated to be positively correlated with the activity of the oncogenic ERK pathway in non-small cell lung cancer tissue and is an ETS-regulated negative feedback mediator of ERK signaling in lung cancer cells (Zhang et al., 2010).
Prognosis
Elevated DUSP6 RNA expression was reported to be a major negative predictor of survival in patients with resected non-small cell lung cancer as part of a five-gene signature model (Chen et al., 2007).

Bibliography

Pubmed IDLast YearTitleAuthors
151867722004Protein tyrosine phosphatases in the human genome.Alonso A et al
204631702010The dual-specificity MAP kinase phosphatases: critical roles in development and cancer.Bermudez O et al
157609172005Effect of common B-RAF and N-RAS mutations on global gene expression in melanoma cell lines.Bloethner S et al
186327522008Loss of MKP3 mediated by oxidative stress enhances tumorigenicity and chemoresistance of ovarian cancer cells.Chan DW et al
172024512007A five-gene signature and clinical outcome in non-small-cell lung cancer.Chen HY et al
127916452003Gene profiling of a myeloma cell line reveals similarities and unique signatures among IL-6 response, N-ras-activating mutations, and coculture with bone marrow stromal cells.Croonquist PA et al
97888801998Isolation of the human genes encoding the pyst1 and Pyst2 phosphatases: characterisation of Pyst2 as a cytosolic dual-specificity MAP kinase phosphatase and its catalytic activation by both MAP and SAP kinases.Dowd S et al
155721442005Mkp3 is a negative feedback modulator of Fgf8 signaling in the mammalian isthmic organizer.Echevarria D et al
183212442008Negative-feedback regulation of FGF signalling by DUSP6/MKP-3 is driven by ERK1/2 and mediated by Ets factor binding to a conserved site within the DUSP6/MKP-3 gene promoter.Ekerot M et al
112394672001Solution structure of ERK2 binding domain of MAPK phosphatase MKP-3: structural insights into MKP-3 activation by ERK2.Farooq A et al
127592382003Potential tumor suppressive pathway involving DUSP6/MKP-3 in pancreatic cancer.Furukawa T et al
181811762008Gene expression analysis of BCR/ABL1-dependent transcriptional response reveals enrichment for genes involved in negative feedback regulation.Håkansson P et al
191060952009Negative and positive regulation of MAPK phosphatase 3 controls platelet-derived growth factor-induced Erk activation.Jurek A et al
152692202004Both nuclear-cytoplasmic shuttling of the dual specificity phosphatase MKP-3 and its ability to anchor MAP kinase in the cytoplasm are mediated by a conserved nuclear export signal.Karlsson M et al
183306782008Dual-specificity MAP kinase phosphatases (MKPs) and cancer.Keyse SM et al
171644222007Dusp6 (Mkp3) is a negative feedback regulator of FGF-stimulated ERK signaling during mouse development.Li C et al
187531322008DUSP6 (MKP3) null mice show enhanced ERK1/2 phosphorylation at baseline and increased myocyte proliferation in the heart affecting disease susceptibility.Maillet M et al
150952912004Inducible expression of a MAP kinase phosphatase-3-GFP chimera specifically blunts fibroblast growth and ras-dependent tumor formation in nude mice.Marchetti S et al
164240192006Differential gene expression analysis reveals generation of an autocrine loop by a mutant epidermal growth factor receptor in glioma cells.Ramnarain DB et al
161480062005ERK2 shows a restrictive and locally selective mechanism of recognition by its tyrosine phosphatase inactivators not shared by its activator MEK1.Tárrega C et al
150771472004Mitogen-activated protein kinases in apoptosis regulation.Wada T et al
151594082004Mitogen-activated protein kinase phosphatase-3 is a tumor promoter target in initiated cells that express oncogenic Ras.Warmka JK et al
75929161995A single mutation converts a novel phosphotyrosine binding domain into a dual-specificity phosphatase.Wishart MJ et al
200977312010Dual specificity phosphatase 6 (DUSP6) is an ETS-regulated negative feedback mediator of oncogenic ERK signaling in lung cancer cells.Zhang Z et al
170468122006Mapping ERK2-MKP3 binding interfaces by hydrogen/deuterium exchange mass spectrometry.Zhou B et al

Other Information

Locus ID:

NCBI: 1848
MIM: 602748
HGNC: 3072
Ensembl: ENSG00000139318

Variants:

dbSNP: 1848
ClinVar: 1848
TCGA: ENSG00000139318
COSMIC: DUSP6

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000139318ENST00000279488Q16828
ENSG00000139318ENST00000279488A0A024RBC1
ENSG00000139318ENST00000308385Q16828
ENSG00000139318ENST00000547291F8VW29
ENSG00000139318ENST00000548755F8VZA4

Expression (GTEx)

0
10
20
30
40
50
60
70
80
90
100

Pathways

PathwaySourceExternal ID
MAPK signaling pathwayKEGGko04010
MAPK signaling pathwayKEGGhsa04010
Transcriptional misregulation in cancerKEGGko05202
Transcriptional misregulation in cancerKEGGhsa05202
Immune SystemREACTOMER-HSA-168256
Innate Immune SystemREACTOMER-HSA-168249
Toll-Like Receptors CascadesREACTOMER-HSA-168898
Toll Like Receptor 10 (TLR10) CascadeREACTOMER-HSA-168142
MyD88 cascade initiated on plasma membraneREACTOMER-HSA-975871
MAP kinase activation in TLR cascadeREACTOMER-HSA-450294
MAPK targets/ Nuclear events mediated by MAP kinasesREACTOMER-HSA-450282
ERK/MAPK targetsREACTOMER-HSA-198753
ERKs are inactivatedREACTOMER-HSA-202670
Toll Like Receptor 3 (TLR3) CascadeREACTOMER-HSA-168164
MyD88-independent TLR3/TLR4 cascadeREACTOMER-HSA-166166
TRIF-mediated TLR3/TLR4 signalingREACTOMER-HSA-937061
Toll Like Receptor 5 (TLR5) CascadeREACTOMER-HSA-168176
Toll Like Receptor 7/8 (TLR7/8) CascadeREACTOMER-HSA-168181
MyD88 dependent cascade initiated on endosomeREACTOMER-HSA-975155
TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activationREACTOMER-HSA-975138
Toll Like Receptor 9 (TLR9) CascadeREACTOMER-HSA-168138
Toll Like Receptor 4 (TLR4) CascadeREACTOMER-HSA-166016
Activated TLR4 signallingREACTOMER-HSA-166054
MyD88:Mal cascade initiated on plasma membraneREACTOMER-HSA-166058
Toll Like Receptor 2 (TLR2) CascadeREACTOMER-HSA-181438
Toll Like Receptor TLR1:TLR2 CascadeREACTOMER-HSA-168179
Toll Like Receptor TLR6:TLR2 CascadeREACTOMER-HSA-168188
DAP12 interactionsREACTOMER-HSA-2172127
DAP12 signalingREACTOMER-HSA-2424491
RAF/MAP kinase cascadeREACTOMER-HSA-5673001
Negative regulation of MAPK pathwayREACTOMER-HSA-5675221
Fc epsilon receptor (FCERI) signalingREACTOMER-HSA-2454202
FCERI mediated MAPK activationREACTOMER-HSA-2871796
Cytokine Signaling in Immune systemREACTOMER-HSA-1280215
Signaling by InterleukinsREACTOMER-HSA-449147
Interleukin-2 signalingREACTOMER-HSA-451927
Interleukin receptor SHC signalingREACTOMER-HSA-912526
Interleukin-3, 5 and GM-CSF signalingREACTOMER-HSA-512988
Signal TransductionREACTOMER-HSA-162582
Signaling by EGFRREACTOMER-HSA-177929
GRB2 events in EGFR signalingREACTOMER-HSA-179812
SHC1 events in EGFR signalingREACTOMER-HSA-180336
Signaling by Insulin receptorREACTOMER-HSA-74752
Insulin receptor signalling cascadeREACTOMER-HSA-74751
IRS-mediated signallingREACTOMER-HSA-112399
SOS-mediated signallingREACTOMER-HSA-112412
Signalling by NGFREACTOMER-HSA-166520
NGF signalling via TRKA from the plasma membraneREACTOMER-HSA-187037
Signalling to ERKsREACTOMER-HSA-187687
Signalling to RASREACTOMER-HSA-167044
Signalling to p38 via RIT and RINREACTOMER-HSA-187706
Prolonged ERK activation eventsREACTOMER-HSA-169893
Frs2-mediated activationREACTOMER-HSA-170968
ARMS-mediated activationREACTOMER-HSA-170984
Nuclear Events (kinase and transcription factor activation)REACTOMER-HSA-198725
Signaling by PDGFREACTOMER-HSA-186797
Downstream signal transductionREACTOMER-HSA-186763
Signaling by VEGFREACTOMER-HSA-194138
VEGFA-VEGFR2 PathwayREACTOMER-HSA-4420097
VEGFR2 mediated cell proliferationREACTOMER-HSA-5218921
Signaling by SCF-KITREACTOMER-HSA-1433557
MAPK family signaling cascadesREACTOMER-HSA-5683057
MAPK1/MAPK3 signalingREACTOMER-HSA-5684996
RAF-independent MAPK1/3 activationREACTOMER-HSA-112409
Signaling by GPCRREACTOMER-HSA-372790
Gastrin-CREB signalling pathway via PKC and MAPKREACTOMER-HSA-881907
Signaling by Type 1 Insulin-like Growth Factor 1 Receptor (IGF1R)REACTOMER-HSA-2404192
IGF1R signaling cascadeREACTOMER-HSA-2428924
IRS-related events triggered by IGF1RREACTOMER-HSA-2428928
Signaling by LeptinREACTOMER-HSA-2586552
Developmental BiologyREACTOMER-HSA-1266738
Axon guidanceREACTOMER-HSA-422475
NCAM signaling for neurite out-growthREACTOMER-HSA-375165
RET signalingREACTOMER-HSA-8853659

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
228125102013Dual-specificity MAP kinase phosphatases (MKPs): shaping the outcome of MAP kinase signalling.162
230235002012Decline in miR-181a expression with age impairs T cell receptor sensitivity by increasing DUSP6 activity.131
199131212009Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip.85
186327522008Loss of MKP3 mediated by oxidative stress enhances tumorigenicity and chemoresistance of ovarian cancer cells.67
200977312010Dual specificity phosphatase 6 (DUSP6) is an ETS-regulated negative feedback mediator of oncogenic ERK signaling in lung cancer cells.66
127592382003Potential tumor suppressive pathway involving DUSP6/MKP-3 in pancreatic cancer.58
152692202004Both nuclear-cytoplasmic shuttling of the dual specificity phosphatase MKP-3 and its ability to anchor MAP kinase in the cytoplasm are mediated by a conserved nuclear export signal.54
221697692012Comprehensive predictive biomarker analysis for MEK inhibitor GSK1120212.40
128400322003Constitutive induction of p-Erk1/2 accompanied by reduced activities of protein phosphatases 1 and 2A and MKP3 due to reactive oxygen species during cellular senescence.39
196088702009Down-regulation of DUSP6 expression in lung cancer: its mechanism and potential role in carcinogenesis.34

Citation

Zhenfeng Zhang ; Balazs Halmos

DUSP6 (dual specificity phosphatase 6)

Atlas Genet Cytogenet Oncol Haematol. 2011-09-01

Online version: http://atlasgeneticsoncology.org/gene/46105/dusp6