Atlas of Genetics and Cytogenetics in Oncology and Haematology


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LPP (lipoma preferred partner)

Identity

Hugo LPP
Location 3q27-q28

DNA/RNA

 
Description At least 11 exons; predicted start codon in exon 3, stop codon in exon 11; the protein coding region is covered by the overlapping "CEPH Mark 1" YAC clones 135H6 and 192B10 (start codon in 135H6, stop codon in 192B10) and is dispersed over at least 400 kb genomic DNA; the LIM domains are encoded by separate exons: LIM 1 is encoded by exon 8, LIM 2 by exon 9, and LIM 3 by exon 10 and part of exon 11.
Transcription mRNA: ubiquitously: > 10 kb; testis: additional transcripts of 1.8 kb and 1.25 kb
Pseudogene no pseudogenes

Protein

Description 612 amino acids; proline-rich region (amino-terminal 2/3 of the protein) followed by three LIM domains (carboxy-terminal 1/3 of the protein). Proline-rich region contains an alfa-actinin binding site, two VASP-binding motifs, and a nuclear export signal.
Expression Smooth muscle marker; readily detected on Western blot with an LPP-antibody in all fibroblastic and epithelial cell lines tested to date.
Localisation LPP is present in the cytoplasm of cells as well as at sites of cell adhesion such as focal adhesions (attachments sites to the extracellular matrix) and cell-cell contacts; LPP also shuttles to the nucleus and its nuclear-cytoplasmic localisation is regulated in part by a nuclear export signal (NES) which is sensitive to the drug leptomycin B.
Function Because of their structural features (many protein-protein interaction domains) and their characteristic to shuttle between the nucleus and the cytoplasm, LPP and its family members (see below) have been proposed to be scaffolding proteins involved in signal transduction from sites of cell adhesion to the nucleus; LPP has been shown to harbour transcriptional activation capacity in luciferase reporter assays, suggesting that LPP may be directly involved in the regulation of gene expression; LPP was found to be highly expressed in smooth muscle, and a role for LPP in regulating cell motility was proposed; the precise function of LPP remains to be elucidated.
Homology LPP is a member of the zyxin family of proteins, which contains five members: ajuba, LIMD1, LPP, TRIP6 and zyxin. The family hallmark of these proteins are three clustered LIM domains at the carboxy-terminus, which are protein interaction domains. All family members are present at sites of cell adhesion and have the ability to shuttle to the nucleus, and all family members have one or more nuclear export signals.

Mutations

Somatic HMGA2/LPP fusion proteins and MLL/LPP fusion proteins (Fig2).

Implicated in

Entity solitary lipomas
Disease Benign tumors of adipose tissue.
Prognosis Can be surgically removed with no recurrence in most cases.
Cytogenetics More than 60% of solitary lipomas have an aberrant karyotype; 2/3 of these carry 12q15 rearrangements, most often translocations, affecting the HMGA2 gene; 1/4 of the latter have chromosomal region 3q27-q28 (containing LPP) as 12q15 translocation partner as such creating an HMGA2/LPP fusion gene.
Hybrid/Mutated Gene HMGA2/LPP hybrid gene containing the first three exons of HMGA2 and exons 8-11 or 9-11 of LPP; under the regulation of the HMGA2 promoter.
Abnormal Protein HMGA2/LPP fusion transcripts encode the three DNA-binding domains of HMGA2 followed by two LIM domains (LIM 2 and LIM 3) or a portion of the proline-rich region and all three LIM domains of LPP.
 
  
Entity Pulmonary chondroid hamartomas
Disease Benign mesenchymal tumors of the lung.
Prognosis good
Cytogenetics More than 70% of pulmonary chondroid hamartomas have an aberrant karyotype; 70% of these carry 12q15 rearrangements, most often translocations, affecting the HMGA2 gene; 1/8 of the latter have chromosomal region 3q27-q28 (containing LPP) as 12q15 translocation partner as such creating an HMGA2/LPP fusion gene.
Hybrid/Mutated Gene HMGA2/LPP hybrid gene containing the first three exons of HMGA2 and exons 9-11 of LPP; under the regulation of the HMGA2 promoter.
Abnormal Protein HMGA2/LPP fusion transcripts encode the three DNA-binding domains of HMGA2 followed by the two most carboxy-terminal LIM domains (LIM 2 and LIM 3) of LPP.
  
Entity Parosteal lipoma
Disease Rare deep-seated benign tumor of adipose tissue comprising less than 0.5% of all lipomas; parosteal lipomas exhibit a contiguous relationship with the periostium; because of their intimate relationship to the bone, they are considered as lipomas of bone.
Prognosis Most often asymptomatic; in some cases: loss of motor and/or sensory function as a result of the compression or stretching of a nerve.
Cytogenetics One case reported with rearrangement of LPP t(3;12)(q28;q14).
Hybrid/Mutated Gene HMGA2/LPP hybrid gene containing the first three exons of HMGA2 and exons 9-11 of LPP; under the regulation of the HMGA2 promoter.
Abnormal Protein HMGA2/LPP fusion transcripts encode the three DNA-binding domains of HMGA2 followed by the two most carboxy-terminal LIM domains (LIM 2 and LIM 3) of LPP.
  
Entity Soft tissue chondroma
Disease Benign tumor of cartilage; rare entity.
Cytogenetics Only 31 cases with abnormal karyotypes have been reported (11-2003); 12q15 nonrandomly involved; one case reported with rearrangement of LPP t(3;12)(q27;q15).
Hybrid/Mutated Gene HMGA2/LPP hybrid gene containing the first three exons of HMGA2 and exons 9-11 of LPP; under the regulation of the HMGA2 promoter.
Abnormal Protein HMGA2/LPP fusion transcripts encode the three DNA-binding domains of HMGA2 followed by the two most carboxy-terminal LIM domains (LIM 2 and LIM 3) of LPP.
  
Entity AML-M5
Disease Secondary leukemia following treatment with DNA topoisomerase II inhibitors.
Cytogenetics MLL gene on 11q23 frequently involved; one case reported with rearrangement of LPP t(3;11)(q28;q23).
Hybrid/Mutated Gene MLL/LPP hybrid gene containing the first 8 exons of MLL and exons 9-11 of LPP; under the regulation of the MLL promoter.
Abnormal Protein MLL/LPP fusion transcripts encode the three DNA-binding domains and the methyltransferase-like domain of MLL followed by the two most carboxy-terminal LIM domains (LIM 2 and LIM 3) of LPP.
  

Breakpoints

 

External links

Nomenclature
HugoLPP
GDBLPP
Entrez_GeneLPP  4026  LIM domain containing preferred translocation partner in lipoma
Cards
AtlasLPPID72
GeneCardsLPP
EnsemblLPP [Search_View]   ENSG00000145012 [Gene_View]
GenatlasLPP
GeneLynxLPP
eGenomeLPP
euGene4026
Genomic and cartography
GoldenPathLPP  -     chr3:189413415-190080135 +  3q28   [Description]    (hg18-Mar_2006)
EnsemblLPP - 3q28 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneLPP
Gene and transcription
GenbankAL833171 [ ENTREZ ]
GenbankBC130584 [ ENTREZ ]
GenbankBG192042 [ ENTREZ ]
GenbankCR457074 [ ENTREZ ]
GenbankU29116 [ ENTREZ ]
RefSeqNM_005578 [ SRS ]    NM_005578 [ ENTREZ ]
RefSeqAC_000046 [ SRS ]    AC_000046 [ ENTREZ ]
RefSeqNC_000003 [ SRS ]    NC_000003 [ ENTREZ ]
RefSeqNT_005612 [ SRS ]    NT_005612 [ ENTREZ ]
RefSeqNW_921807 [ SRS ]    NW_921807 [ ENTREZ ]
AceViewLPP AceView - NCBI
UnigeneHs.444362 [ SRS ]    Hs.444362 [ NCBI ]     HS444362 [ spliceNest ]
Fast-db15500 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ93052 [ SRS]    Q93052 [ EXPASY ]     Q93052 [ INTERPRO ]
PrositePS00478 LIM_DOMAIN_1 [ SRS ]    PS00478 LIM_DOMAIN_1 [ Expasy ]
PrositePS50023 LIM_DOMAIN_2 [ SRS ]    PS50023 LIM_DOMAIN_2 [ Expasy ]
InterproIPR001781 Znf_LIM [ SRS ]    IPR001781 Znf_LIM [ EBI ]
CluSTrQ93052
PfamPF00412 LIM [ SRS ]    PF00412 LIM [ Sanger ]    pfam00412 [ NCBI-CDD ]
SmartSM00132 LIM [EMBL]
ProdomPD000094 LIM[INRA-Toulouse]
ProdomQ93052 LPP_HUMAN [ Domain structure ]   Q93052 LPP_HUMAN  [ sequences sharing at least 1 domain ]
BlocksQ93052
HPRD02828
Protein Interaction databases
DIPQ93052
IntActQ93052
Polymorphism : SNP, mutations, diseases
OMIM600700;601626    [ map ]   
GENECLINICS600700;601626
SNPLPP [dbSNP-NCBI]  
SNPNM_005578 [SNP-NCI]  
SNPLPP [GeneSNPs - Utah]  LPP] [HGBASE - SRS]
HAPMAPLPP [HAPMAP]  
COSMICLPP [Somatic mutation (COSMIC-CGP-Sanger)]  
TICdbLPP [Translocation breakpoints In Cancer]  
HGMDLPP
General knowledge
Family BrowserLPP [UCSC Family Browser]
SOURCENM_005578
SMDHs.444362
SAGEHs.444362
GOmolecular_function [Amigo]  molecular_function
GOprotein binding [Amigo]  protein binding
GOcellular_component [Amigo]  cellular_component
GOnucleus [Amigo]  nucleus
GOcytoplasm [Amigo]  cytoplasm
GOplasma membrane [Amigo]  plasma membrane
GOcell adhesion [Amigo]  cell adhesion
GObiological_process [Amigo]  biological_process
GOzinc ion binding [Amigo]  zinc ion binding
GOcell junction [Amigo]  cell junction
GOmetal ion binding [Amigo]  metal ion binding
PubGeneLPP
TreeFamLPP
CTD4026 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeLPP Related clones (RZPD - Berlin)
PubMed
PubMed24 Pubmed reference(s) in LocusLink

Bibliography

LPP, the preferred fusion partner gene of HMGIC in lipomas, is a novel member of the LIM protein gene family.
Petit MM, Mols R, Schoenmakers EF, Mandahl N, Van de Ven WJ
Genomics. 1996 ; 36 (1) : 118-129.
PMID 8812423
 
Expression of reciprocal fusion transcripts of the HMGIC and LPP genes in parosteal lipoma.
Petit MM, Swarts S, Bridge JA, Van de Ven WJ
Cancer genetics and cytogenetics. 1998 ; 106 (1) : 18-23.
PMID 9772904
 
The t(3;12)(q27;q14-q15) with underlying HMGIC-LPP fusion is not determining an adipocytic phenotype.
Rogalla P, Kazmierczak B, Meyer-Bolte K, Tran KH, Bullerdiek J
Genes, chromosomes & cancer. 1998 ; 22 (2) : 100-104.
PMID 9598796
 
LPP, an actin cytoskeleton protein related to zyxin, harbors a nuclear export signal and transcriptional activation capacity.
Petit MM, Fradelizi J, Golsteyn RM, Ayoubi TA, Menichi B, Louvard D, Van de Ven WJ, Friederich E
Molecular biology of the cell. 2000 ; 11 (1) : 117-129.
PMID 10637295
 
Human LPP gene is fused to MLL in a secondary acute leukemia with a t(3;11) (q28;q23).
Dahron L, Veinstein A, Brizard F, Drabkin H, Lacotte L, Guilhot F, Larsen CJ, Brizard A, Roche J
Genes, chromosomes & cancer. 2001 ; 31 (4) : 382-389.
PMID 11433529
 
A novel LPP fusion gene indicates the crucial role of truncated LPP proteins in lipomas and pulmonary chondroid hamartomas.
Lemke I, Rogalla P, Bullerdiek J
Cytogenetics and cell genetics. 2001 ; 95 (3-4) : 153-156.
PMID 12063392
 
Fusion, disruption, and expression of HMGA2 in bone and soft tissue chondromas.
Dahln A, Mertens F, Rydholm A, Brosj O, Wejde J, Mandahl N, Panagopoulos I
Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc. 2003 ; 16 (11) : 1132-1140.
PMID 14614053
 
LPP, a LIM protein highly expressed in smooth muscle.
Gorenne I, Nakamoto RK, Phelps CP, Beckerle MC, Somlyo AV, Somlyo AP
American journal of physiology. Cell physiology. 2003 ; 285 (3) : C674-C685.
PMID 12760907
 
The lipoma preferred partner LPP interacts with alpha-actinin.
Li B, Zhuang L, Reinhard M, Trueb B
Journal of cell science. 2003 ; 116 (Pt 7) : 1359-1366.
PMID 12615977
 
Prediction of cell type-specific gene modules: identification and initial characterization of a core set of smooth muscle-specific genes.
Nelander S, Mostad P, Lindahl P
Genome research. 2003 ; 13 (8) : 1838-1854.
PMID 12869577
 
The focal adhesion and nuclear targeting capacity of the LIM-containing lipoma-preferred partner (LPP) protein.
Petit MM, Meulemans SM, Van de Ven WJ
The Journal of biological chemistry. 2003 ; 278 (4) : 2157-2168.
PMID 12441356
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written05-2004Marleen M Petit
Laboratory for Molecular Oncology, Department of Human Genetics, University of Leuven (K.U.Leuven) & VIB, Herestraat 49, B-3000 Leuven, Belgium

Citation

This paper should be referenced as such :
Petit MM . LPP (lipoma preferred partner). Atlas Genet Cytogenet Oncol Haematol. May 2004 .
URL : http://AtlasGeneticsOncology.org/Genes/LPPID72.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 2 08:24:42 2008


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