ZFP36L1 (Zinc finger protein 36, C3H type-like 1)

2007-11-01   Deborah J Stumpo , Perry J Blackshear 

Laboratory of Neurobiology, NIEHS MD A2-05, 111 Alexander Drive, Research Triangle Park, NC 27709, USA

Identity

HGNC
LOCATION
14q24.1
LOCUSID
ALIAS
BRF1,Berg36,ERF-1,ERF1,RNF162B,TIS11B,cMG1
FUSION GENES

DNA/RNA

Atlas Image
Diagram of the human ZFP36L1 gene. Exons are represented by gray boxes; intron by the hatched box. The translation start site is indicated by the arrow and the translation stop site by the double line. The dark box represents the CCCH tandem zinc finger domain.

Description

The human ZFP36L1 has 2 exons spanning 5411 bp on chromosome 14 (NC_000014.7; NT_026437.11). The first exon, which is small (186 bp), is separated from the larger second exon (2834 bp) by a 2388 bp intron.

Transcription

3022 bp human transcript (NM_004926.2) with 1014 bp (338 amino acids) of coding region.

Pseudogene

None known.

Proteins

Description

Human ZFP36L1 is a 338 amino acid protein with a predicted molecular weight of 36.3 kDa.

Expression

In the adult mouse, expression appears to be ubiquitous. Based on northern blots, mRNA expression is highest in mouse kidney, spleen, ovary and lung, with lower levels of expression in thymus and heart, and still lower levels in brain, liver and testis. In the embryonic mouse, mRNA was barely detectable at embryonic day 7.5 (E7.5), but increased dramatically by E9.5 and E10.5. In situ hybridization histochemistry demonstrated that there was high level expression in the allantois at E8.0, immediately before fusion with the chorion. Expression is also seen in mouse embryonic stem cells.

Localisation

Transfection studies using a GFP-tagged protein have shown diffuse cytoplasmic expression. There is good evidence that the protein can shuttle between the nucleus and the cytoplasm in a CRM1 (nuclear export receptor)-dependent, leptomycin B-inhibitable manner.

Function

ZFP36L1 is a member of the TTP (ZFP36) family of CCCH tandem zinc finger proteins. These proteins have been shown to bind to target mRNAs through their AU-rich elements present in the 3-untranslated regions of the mRNA.
The binding of these proteins to mRNA leads to deadenylation and destabilization of the mRNA. All four family members have been shown to bind directly to single stranded RNA probes (RNA gel shift assays), destabilize target mRNA (co-transfection assays), and deadenylate ARE-containing RNA probes (cell-free deadenylation assays). Physiological target mRNAs have been identified for TTP which include tumor necrosis factor alpha (TNF), granulocyte-macrophage colony stimulating factor (GM-CSF), interleukin-2b (IL-2), and immediate early response gene 3 (IER3, IEX-1, gly96).
To date, one physiological target mRNA has been identified for ZFP36L1; however, this target mRNA is not destabilized by ZFP36L1 (see below).
Two reports of ZFP36L1 knockout mice have been published. In one report, knockout embryos died around embryonic day 11 mainly due to failure of chorioallantoic fusion. When fusion did occur, there was increased apoptosis throughout the neural tube, as well as placental failure due to atrophy of the trophoblast layers. In a second report, knockout embryos also died at mid-gestation and exhibited extraembryonic and intraembryonic vascular abnormalities and heart defects. In the developing placenta, the extraembryonic mesoderm failed to invaginate the trophoblast layer. This phenotype was associated with an elevated expression of vascular endothelial growth factor (VEGF)-A (in the embryo and in mouse embryonic fibroblasts). This elevated level of expression was not due to increased stability of the VEGF-A mRNA, but rather due to enhanced association with polyribosomes.
This is in contrast to a prior report using co-transfection studies showing that ZFP36L1 was able to bind to two AU-rich motifs in the 3 UTR of VEGF mRNA that led to destabilization of the mRNA. Mouse ZFP36L1 has been shown to interact with 14-3-3 proteins in a phosphorylation-dependent manner. This interaction causes ZFP36L1 to be sequestered in the cytoplasm preventing it from regulating mRNA decay. Several studies have suggested that ZFP36L1 may function as a pro-apoptotic protein.

Homology

Four members of the TTP family of CCCH tandem zinc finger proteins, TTP (ZFP36), ZFP36L1, ZFP36L2 and the rodent-specific ZFP36L3, have been identified. They all share a highly conserved tandem zinc finger domain.

Mutations

Note

Eight polymorphisms have been identified. The functional significance of these polymorphisms has not been determined.
1) G change into T at base 644 in the 5 UTR
2) AG change into GC at base 706 in the first coding region
3) G change into A at base 729 in the intron
4) C change into CC at base 772 in the intron
5) A change into G at base 804 in the intron
6) G change into C at base 845 in the intron
7) G change into A at base 3685 in the second coding region
8) C change into A at base 3915 in the second coding region

Implicated in

Entity name
Cisplatin sensitivity in head and neck squamous cell carcinoma (HNSCC).
Note
A common feature in HNSCC is cisplatin sensitivity. Microarray analysis identified mouse ZFP36L1 to be differentially expressed by cisplatin treatment. Cisplatin-sensitive HNSCC cell lines expressed elevated levels of ZFP36L1 compared to cisplatin-resistant HNSCC cell lines. Downregulation of ZFP36L1 (using antisense oligonucleotides) in cisplatin-sensitive cell lines made the cells cisplatin-resistant. Conversely, overexpression of ZFP36L1 reverted cisplatin-resistant cells to cisplatin-sensitive cells. There was an inverse correlation between the expression levels of ZFP36L1 and the human inhibitor of apoptosis protein-2, cIAP2 (Birc3, baculoviral IAP repeat-containing 3). Increased expression of ZFP36L1 also correlated with increased caspase-3 activity and increased cisplatin-induced apoptosis. These results suggested that expression of ZFP36L1 enhanced cisplatin sensitivity in HNSCC cells by reducing cIAP2 mRNA levels.
Entity name
t(8;21) translocation
Note
The AML1-MTG8 fusion transcription factor generated by t(8;21) translocation is thought to affect the normal regulation of genes that are needed for differentiation and proliferation of hematopoietic progenitors leading to acute myelogenous leukemia (AML). ZFP36L1 was identified as an up-regulated gene in t(8;21) leukemic cells suggesting that it may be important to AML1-MTG8-mediated leukemogenesis.
Entity name
Human T-lymphotropic virus 1(HTLV-1)
Note
ZFP36L1 expression is also up-regulated in human T-lymphotropic virus 1(HTLV-1)-infected cells. HTLV-1 is associated with adult T-cell leukemia/lymphoma and the Tax oncoprotein encoded by the 3 region of HTLV-1 has been proposed to dysregulate the expression of many genes that are important for cell proliferation. The Tax transactivator was shown to bind to two ZFP36L1 upstream elements (a novel transcription factor-binding site labeled BRF1 Tax-responsive site or BTRS and a second consensus cAMP-responsive site or CRE).
Entity name
Various cancers.
Note
Increased expression of ZFP36L1 has been seen in several cancers including lymph node (+) primary breast tumors and hepatocellular carcinomas. Increased expression has also been demonstrated in a number of the NCI 60 panel of human cancer cell lines. These include the mammary gland cancer cell lines BT549, MDA-MB-231, and NCI/ADR-RES; ovarian cell lines OVCAR-5, OVCAR-8 and SK-OV-3; lung cell line NCI-H226; skin cell lines LOXMVI, M14, MALME-3M, and SK-MEL-2; brain cell lines SF268 and SF295; prostate cell line PC-3; kidney cell lines A498, ACHN, CAKI-1, SN12C, TK10, and UO31; and colon cell line HT29.

Bibliography

Pubmed IDLast YearTitleAuthors
178556572007Breast cancer molecular signatures as determined by SAGE: correlation with lymph node status.Abba MC et al
170138842006The RNA binding protein Zfp36l1 is required for normal vascularisation and post-transcriptionally regulates VEGF expression.Bell SE et al
170306082006BRF1 protein turnover and mRNA decay activity are regulated by protein kinase B at the same phosphorylation sites.Benjamin D et al
158148982005Zfp36l3, a rodent X chromosome gene encoding a placenta-specific member of the Tristetraprolin family of CCCH tandem zinc finger proteins.Blackshear PJ et al
104630611999The product of the primary response gene BRF1 inhibits the interaction between 14-3-3 proteins and cRaf-1 in the yeast trihybrid system.Bustin SA et al
80246891994Cloning and characterization of ERF-1, a human member of the Tis11 family of early-response genes.Bustin SA et al
107068522000Evidence that tristetraprolin is a physiological regulator of granulocyte-macrophage colony-stimulating factor messenger RNA deadenylation and stability.Carballo E et al
175173662007Comparative expression of tristetraprolin (TTP) family member transcripts in normal human tissues and cancer cell lines.Carrick DM et al
154677552004Destabilization of vascular endothelial growth factor mRNA by the zinc-finger protein TIS11b.Ciais D et al
22764421990Identification of a mRNA rapidly induced in an intestinal epithelial cell line by epidermal growth factor.Gomperts M et al
118868502002Cytoplasmic localization of tristetraprolin involves 14-3-3-dependent and -independent mechanisms.Johnson BA et al
107514062000Interactions of CCCH zinc finger proteins with mRNA. Binding of tristetraprolin-related zinc finger proteins to Au-rich elements and destabilization of mRNA.Lai WS et al
170306202006Novel mRNA targets for tristetraprolin (TTP) identified by global analysis of stabilized transcripts in TTP-deficient fibroblasts.Lai WS et al
158803582005Butyrate response factor 1 enhances cisplatin sensitivity in human head and neck squamous cell carcinoma cell lines.Lee SK et al
145050902003Expression of butyrate response factor 1 in HTLV-1-transformed cells and its transactivation by tax protein.Li B et al
88989451996Distinct mechanisms for rescue from apoptosis in Ramos human B cells by signaling through CD40 and interleukin-4 receptor: role for inhibition of an early response gene, Berg36.Ning ZQ et al
156349182005Tristetraprolin down-regulates IL-2 gene expression through AU-rich element-mediated mRNA decay.Ogilvie RL et al
117967232002Members of the tristetraprolin family of tandem CCCH zinc finger proteins exhibit CRM1-dependent nucleocytoplasmic shuttling.Phillips RS et al
108871312000Analysis of genes under the downstream control of the t(8;21) fusion protein AML1-MTG8: overexpression of the TIS11b (ERF-1, cMG1) gene induces myeloid cell proliferation in response to G-CSF.Shimada H et al
152264442004Chorioallantoic fusion defects and embryonic lethality resulting from disruption of Zfp36L1, a gene encoding a CCCH tandem zinc finger protein of the Tristetraprolin family.Stumpo DJ et al
19961201991The TIS11 primary response gene is a member of a gene family that encodes proteins with a highly conserved sequence containing an unusual Cys-His repeat.Varnum BC et al
170582412006Upregulation of the tumor suppressor gene menin in hepatocellular carcinomas and its significance in fibrogenesis.Zindy PJ et al

Other Information

Locus ID:

NCBI: 677
MIM: 601064
HGNC: 1107
Ensembl: ENSG00000185650

Variants:

dbSNP: 677
ClinVar: 677
TCGA: ENSG00000185650
COSMIC: ZFP36L1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000185650ENST00000336440Q07352
ENSG00000185650ENST00000336440A0A024R658
ENSG00000185650ENST00000439696Q07352
ENSG00000185650ENST00000439696A0A024R658
ENSG00000185650ENST00000553375G3V515
ENSG00000185650ENST00000555997G3V382
ENSG00000185650ENST00000557022G3V2D5
ENSG00000185650ENST00000557086G3V2P5

Expression (GTEx)

0
100
200
300
400
500
600
700

Pathways

PathwaySourceExternal ID
Gene ExpressionREACTOMER-HSA-74160
Regulation of mRNA stability by proteins that bind AU-rich elementsREACTOMER-HSA-450531
Butyrate Response Factor 1 (BRF1) binds and destabilizes mRNAREACTOMER-HSA-450385

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
194171052009Structural insights into eRF3 and stop codon recognition by eRF1.62
212789252011The roles of TTP and BRF proteins in regulated mRNA decay.62
250142172014Post-transcriptional regulation of BCL2 mRNA by the RNA-binding protein ZFP36L1 in malignant B cells.23
265421732015ZFP36L1 promotes monocyte/macrophage differentiation by repressing CDK6.16
198016542009Von Hippel-Lindau gene product modulates TIS11B expression in renal cell carcinoma: impact on vascular endothelial growth factor expression in hypoxia.14
207025872010ZFP36L1 negatively regulates erythroid differentiation of CD34+ hematopoietic stem cells by interfering with the Stat5b pathway.14
146040092003Polymorphisms in the genes encoding members of the tristetraprolin family of human tandem CCCH zinc finger proteins.10
201668982010ZFP36L1 is regulated by growth factors and cytokines in keratinocytes and influences their VEGF production.10
190928552009Involvement of Tis11b, an AU-rich binding protein, in induction of apoptosis by rituximab in B cell chronic lymphocytic leukemia cells.9
256700042015Anti-inflammatory genes associated with multiple sclerosis: a gene expression study.8

Citation

Deborah J Stumpo ; Perry J Blackshear

ZFP36L1 (Zinc finger protein 36, C3H type-like 1)

Atlas Genet Cytogenet Oncol Haematol. 2007-11-01

Online version: http://atlasgeneticsoncology.org/gene/42866/zfp36l1