CDH13 (cadherin 13, H-cadherin (heart))
2011-03-01 Tamotsu Takeuchi   AffiliationDepartment of Pathology, Kochi Medical School, Kohasu, Okou, Nankoku, Kochi 783 8505, Japan
DNA/RNA
Note
Promoter region of CDH13 is CpG rich and often hypermethylated in various malignant tumors, i.e. breast, lung, colorectal, skin, ovary, chronic myeloid leukemia, and more.

DNA of CDH13 gene composed of 14 coding exons.
Transcription
3828 bp mRNA; 2145 bp open reading frame.
Pseudogene
Not yet reported.
Proteins

Schematic representation of CDH13 protein. SP: signal peptide sequence, EC: extracellular cadherin repeat, GPI: glycosylphosphatidylinositol anchor.
Description
713 amino acids.
Unlike classical cadherin molecules, CDH13 lacks a transmembrane domain or cytoplasmic region, and is anchored to surface membrane via glycosylphosphatidylinositol anchor. The extracellular domain of CDH13 shows significant homology with other cadherins; however, CDH13 EC1 lacks many amino acids crucial for the adhesive functions.
CDH13 lacks intracellular domain, which is believed to be critical for homophilic adhesion of other classical cadherins.
Unlike classical cadherin molecules, CDH13 lacks a transmembrane domain or cytoplasmic region, and is anchored to surface membrane via glycosylphosphatidylinositol anchor. The extracellular domain of CDH13 shows significant homology with other cadherins; however, CDH13 EC1 lacks many amino acids crucial for the adhesive functions.
CDH13 lacks intracellular domain, which is believed to be critical for homophilic adhesion of other classical cadherins.
Expression
Heart, skeletal muscle, brain, bone (osteoblast), epidermal basal cell, endothelial cell (tumor vessel, active remodeling vascule).
Controversial experiments and arguments exist for the expression in the liver, hepatocyte.
Controversial experiments and arguments exist for the expression in the liver, hepatocyte.
Localisation
Cell surface membrane, lipid raft (cytoplasmic and nuclear localization are also reported).
Function
CDH13 is believed to have diverse functions.
1. Adiponectin receptor. CDH13 binds to the hexameric and larger adiponectin, an insulin-sensitizing hormone, which is secreted by adipocytes.
2. Homophilic adhesion. Unlike other classical cadherins, which have the strong homophilic adhesion function, EC1 domain of CDH13 lacks many amino acids crucial for the adhesive functions. Instead CDH13 is thought to form dimers through the non-swapped interface near the EC1-EC2 calcium binding site.
3. Tumor suppressor function. Especially against cancer invasion; however, the exact molecular mechanism which is responsible for inhibiting cancer progression still remains unclear.
4. Angiogenesis. CDH13 facilitates tumor neovascularization. In tumor microenvironment, CDH13 may recruit adiponectin to sequester various growth factors to assist the tumor associated angiogenesis.
1. Adiponectin receptor. CDH13 binds to the hexameric and larger adiponectin, an insulin-sensitizing hormone, which is secreted by adipocytes.
2. Homophilic adhesion. Unlike other classical cadherins, which have the strong homophilic adhesion function, EC1 domain of CDH13 lacks many amino acids crucial for the adhesive functions. Instead CDH13 is thought to form dimers through the non-swapped interface near the EC1-EC2 calcium binding site.
3. Tumor suppressor function. Especially against cancer invasion; however, the exact molecular mechanism which is responsible for inhibiting cancer progression still remains unclear.
4. Angiogenesis. CDH13 facilitates tumor neovascularization. In tumor microenvironment, CDH13 may recruit adiponectin to sequester various growth factors to assist the tumor associated angiogenesis.
Homology
CDH1 (approximately 38%).
Mutations
Note
Silencing of CDH13 expression is often found in various malignant tumors. Hypermethylation of the promoter region is the major molecular mechanism for loss of CDH13 expression.
Genomic mutation is little reported.
Genomic mutation is little reported.
Implicated in
Entity name
Various malignant tumors, i.e. breast, lung, colorectal, skin, ovary and chronic myeloid leukemia
Note
Expression of CDH13 is downregulated by the aberrant methylation of the promoter region of CDH13 gene. On the other hand, CDH13 is over-expressed in tumor vascular endothelial cells and thought to support the neoangiogenesis.
Article Bibliography
| Pubmed ID | Last Year | Title | Authors |
|---|---|---|---|
| 19116147 | 2009 | Zeb1-mediated T-cadherin repression increases the invasive potential of gallbladder cancer. | Adachi Y et al |
| 20190755 | 2010 | T-cadherin structures reveal a novel adhesive binding mechanism. | Ciatto C et al |
| 18550521 | 2008 | Insights into the low adhesive capacity of human T-cadherin from the NMR structure of Its N-terminal extracellular domain. | Dames SA et al |
| 21041950 | 2010 | T-cadherin is critical for adiponectin-mediated cardioprotection in mice. | Denzel MS et al |
| 15210937 | 2004 | T-cadherin is a receptor for hexameric and high-molecular-weight forms of Acrp30/adiponectin. | Hug C et al |
| 8673923 | 1996 | H-cadherin, a novel cadherin with growth inhibitory functions and diminished expression in human breast cancer. | Lee SW et al |
| 1654948 | 1991 | T-cadherin, a novel cadherin cell adhesion molecule in the nervous system lacks the conserved cytoplasmic region. | Ranscht B et al |
| 12697869 | 2003 | Cadherin-13, a mediator of calcium-dependent cell-cell adhesion, is silenced by methylation in chronic myeloid leukemia and correlates with pretreatment risk profile and cytogenetic response to interferon alfa. | Roman-Gomez J et al |
| 9737784 | 1998 | The H-cadherin (CDH13) gene is inactivated in human lung cancer. | Sato M et al |
| 12177241 | 2002 | Loss of T-cadherin (CDH13, H-cadherin) expression in cutaneous squamous cell carcinoma. | Takeuchi T et al |
| 7982033 | 1994 | Cloning of five human cadherins clarifies characteristic features of cadherin extracellular domain and provides further evidence for two structurally different types of cadherin. | Tanihara H et al |
| 9468307 | 1998 | Identification of an atypical lipoprotein-binding protein from human aortic smooth muscle as T-cadherin. | Tkachuk VA et al |
| 12067979 | 2002 | Aberrant methylation of the CDH13 (H-cadherin) promoter region in colorectal cancers and adenomas. | Toyooka S et al |
| 10987267 | 2000 | Increased expression of H/T-cadherin in tumor-penetrating blood vessels. | Wyder L et al |
Other Information
Locus ID:
NCBI: 1012
MIM: 601364
HGNC: 1753
Ensembl: ENSG00000140945
Variants:
dbSNP: 1012
ClinVar: 1012
TCGA: ENSG00000140945
COSMIC: CDH13
RNA/Proteins
Expression (GTEx)
Pathways
Protein levels (Protein atlas)
References
| Pubmed ID | Year | Title | Citations |
|---|---|---|---|
| 36482494 | 2023 | Hsa_circ_0000119 promoted ovarian cancer development via enhancing the methylation of CDH13 by sponging miR-142-5p. | 1 |
| 36482494 | 2023 | Hsa_circ_0000119 promoted ovarian cancer development via enhancing the methylation of CDH13 by sponging miR-142-5p. | 1 |
| 33972691 | 2022 | Cadherin-13 is a critical regulator of GABAergic modulation in human stem-cell-derived neuronal networks. | 28 |
| 33972691 | 2022 | Cadherin-13 is a critical regulator of GABAergic modulation in human stem-cell-derived neuronal networks. | 28 |
| 32691279 | 2021 | CDH13 and LPHN3 Gene Polymorphisms in Attention-Deficit/Hyperactivity Disorder: Their Relation to Clinical Characteristics. | 2 |
| 33242156 | 2021 | The immunohistochemical expression of von Willebrand factor, T-cadherin, and Caveolin-1 is increased in kidney allograft biopsies with antibody-mediated injury. | 1 |
| 33407434 | 2021 | Interactive association between dietary fat and sex on CDH13 cg02263260 methylation. | 2 |
| 33539522 | 2021 | Identification and Clinical Associations of 3 Forms of Circulating T-cadherin in Human Serum. | 3 |
| 33818827 | 2021 | microRNA-377-3p downregulates the oncosuppressor T-cadherin in colorectal adenocarcinoma cells. | 4 |
| 34573337 | 2021 | A Common CDH13 Variant Is Associated with Low Agreeableness and Neural Responses to Working Memory Tasks in ADHD. | 5 |
| 34680977 | 2021 | Genome-Wide Association Study on Adiponectin-Mediated Suppression of HDL-C Levels in Taiwanese Individuals Identifies Functional Haplotypes in CDH13. | 1 |
| 34759445 | 2021 | Association of CDH13 Gene Polymorphism and Metabolic Syndrome in Gambian Population. | 0 |
| 34798557 | 2021 | Revisiting the multiple roles of T-cadherin in health and disease. | 6 |
| 32691279 | 2021 | CDH13 and LPHN3 Gene Polymorphisms in Attention-Deficit/Hyperactivity Disorder: Their Relation to Clinical Characteristics. | 2 |
| 33242156 | 2021 | The immunohistochemical expression of von Willebrand factor, T-cadherin, and Caveolin-1 is increased in kidney allograft biopsies with antibody-mediated injury. | 1 |
Citation
Tamotsu Takeuchi
CDH13 (cadherin 13, H-cadherin (heart))
Atlas Genet Cytogenet Oncol Haematol. 2011-03-01
Online version: http://atlasgeneticsoncology.org/gene/40018/cdh13
