EEF1B2 (eukaryotic translation elongation factor 1 beta 2)
2020-01-01 Luigi Cristiano, MSc AffiliationAesthetic and medical biotechnologies research unit, Prestige, Terranuova Bracciolini, Italy; [email protected] - [email protected]
Abstract
Eukaryotic translation elongation factor 1 beta 2, alias EEF1B2, is a protein-coding gene that plays a role in the elongation step of translation: In fact, it mediates GDP\/GTP exchange on eEF1A. Considering its importance it is found frequently overexpressed in human cancer cells. This review collects the data on DNA\/RNA, on the protein encoded and on the diseases where EEF1B2 is involved.
DNA/RNA

Description
Transcription
| Name | Variant | RefSeq (1) | Transcript ID | Exons | Type | Lenght (bp) | Isoform | Alias | RefSeq (2) | Lenght (aa) | MW (kDa) | pI |
| EEF1B2-201 (EEF1B2-001) | Var.2 | NM_021121.3 | ENST00000236957.9 | 7 | protein coding | 844 (854) | - | P24534 | NP_066944.1 | 225 | 24.76 | 4.50 |
| EEF1B2-202 (EEF1B2-201) | Var.3 | NM_001037663.1 | ENST00000392221.5 | 7 | protein coding | 880 (900) | - | P24534 | NP_001032752.1 | 225 | 24.76 | 4.50 |
| EEF1B2-203 (EEF1B2-003) | Var.1 | NM_001959.4 | ENST00000392222.7 | 6 | protein coding | 808 | - | P24534 | NP_001950.1 | 225 | 24.76 | 4.50 |
| EEF1B2-204 (EEF1B2-005) | - | - | ENST00000415904.1 | 4 | nonsense md | 649 | - | - | - | 68 | - | - | >
| EEF1B2-205 (EEF1B2-007) | - | - | ENST00000429769.5 | 8 | nonsense md | 912 | - | - | - | 68 | - | - |
| EEF1B2-206 (EEF1B2-009) | - | - | ENST00000435123.1 | 3 | nonsense md | 389 | - | - | - | 29 | - | - |
| EEF1B2-207 (EEF1B2-004) | - | - | ENST00000445505.5 | 5 | protein coding | 515 | - | - | - | 123 | - | - |
| EEF1B2-208 (EEF1B2-010) | - | - | ENST00000455150.1 | 6 | nonsense md | 670 | - | - | - | 68 | - | - |
| EEF1B2-209 (EEF1B2-008) | - | - | ENST00000460760.1 | 2 | retained intron | 1025 | - | - | - | - | - | - |
| EEF1B2-210 (EEF1B2-006) | - | - | ENST00000479587.1 | 3 | retained intron | 701 | - | - | - | - | - | - |
| EEF1B2-211 (EEF1B2-002) | - | - | ENST00000482103.1 | 2 | retained intron | 587 | - | - | - | - | - | - |
ncRNA = non-coding RNA; nonsense md = nonsense mediated decay;(?) = undetermined; MW = molecular weight; pI = theoretical pI
The main mRNA reference sequence is NM_001959.4 and it is 808 bp long. The 5UTR counts 85 nt, the CDS is extended from 86 to 763 nt, while the 3UTR covers the last 45 nt.
Pseudogene
If these elements have any regulatory role in the expression of the respective gene as described for others (Hirotsune et al., 2003), is only speculation in the absence of experimental evidence. Currently, there is no evidence about the involvement of these pseudogenes in human cancers or in other diseases.
| Gene | Gene name | Gene ID | RefSeq | Locus | Location | Start | End | Lenght (nt) | Main diseases | Reference |
| EEF1B2P1 | EEF1B2 pseudogene 1 | 1932 | NC_000015.10 | Chromosome 15 | 15q21.2 | 52505029 | 52505908 | 880 | - | - |
| EEF1B2P2 | EEF1B2 pseudogene 2 | 1934 | NC_000005.10 | Chromosome 5 | 5q13.1 | 68159175 | 68159977 | 803 | - | - |
| EEF1B2P3 | EEF1B2 pseudogene 3 | 644820 | NC_000023.11 | Chromosome X | Xp22.11 | 24788347 | 24789110 | 764 | - | - |
| EEF1B2P4 | EEF1B2 pseudogene 4 | 100130631 | NC_000012.12 | Chromosome 12 | 12q23.3 | 106901238 | 106902398 | 1161 | - | - |
| EEF1B2P5 | EEF1B2 pseudogene 5 | 442227 | NC_000006.12 | Chromosome 6 | 6q12 | 63480050 | 63481926 | 1877 | - | - |
| EEF1B2P6 | EEF1B2 pseudogene 6 | 647030 | NC_000007.14 | Chromosome 7 | 7q32.3 | 131661900 | 131662665 | 766 | - | - |
| EEF1B2P7 | EEF1B2 pseudogene 7 | 100421756 | NC_000002.12 | Chromosome 2 | 2q37.1 | 232729478 | 232730276 | 799 | - | - |
| EEF1B2P8 | EEF1B2 pseudogene 8 | 100421774 | NC_000003.12 | Chromosome 3 | 3q26.31 | 175059315 | 175060110 | 796 | - | - |
[ (?) ] uncertain; [ - ] no reference
Proteins

Description
It was shown that the nucleotide exchange reaction by eEF1B2 is inhibited by Mg2+ that binds on K205 residue. Only after the displacing of Mg2+ from its binding site eEF1B2 can function correctly (Pittmann et al, 2006).
In prokaryotes, the homolog of eEF1B2 is known as EF-Ts, while in eukaryotes it is known only one functional protein form with the reference sequence NP_001950.1 by 225 residues. It is found in the eEF1H protein complex and it shows many domains: in the carboxyl half terminal there is an EF-1 guanine nucleotide exchange domain (EF1-GNE domain / GEF) while in the amino half terminal there is a region called GST-C-eEF1b-like domain (Glutathione S-transferase C-terminal-like domain)(see figure.2).
The fold of the C-terminal domain of eEF1B2 is found very similar to that many ribosomal proteins, i.e. it shows two so-called split b-a-b motifs (Andersen et al, 2003). This region possesses nucleotide exchange activity and interacts with eEF1A (Le Sourd et al., 2006).
The non-catalytic N-terminal domain of eEF1B2, that interacts with the N-terminal domain of eEF1G (Le Sourd et al., 2006; van Damme et al, 1991), has a regulatory role on the eEF1B2 itself because it can interfere with the guanine nucleotide exchange activity located on the C-terminal domain. In fact, the non-catalytic N-terminal domain of eEF1B2 brings to the reduction in the overall rate of the guanine nucleotide exchange reaction mediated by eEF1B2. It is only thanks to the bond of eEF1B2 with eEF1G that this inhibitory effect is abolished (Trosiuk et al, 2016).
EEF1B2 interacts primarily with eEF1A1/ EEF1A2 and eEF1G but also with valyl -tRNA synthetase (Val-RS)(Le Sourd et al., 2006; Bec et al., 1994). Seems that there are no direct interactions between eEF1B2 and eEF1D (Cao et al, 2014; Sheu and Traugh, 1997), although different interactional models were proposed (Le Sourd et al., 2006; Jiang et al.,2005; Sheu and Traugh, 1999; Minella et al., 1998).
In addition, eEF1B2 interact with translationally controlled tumor protein (TCTP) but the nature of this interaction is still poorly understood (Wu et al, 2015).
Post-translational modifications. Some post-translational modifications are observed, such as phosphorylation and acetylation (https://www.ncbi.nlm.nih.gov). Phosphorylations of eEF1B2 are made by some protein kinases, including casein kinase 2 (CK2) (Browne and Proud, 2002).

Expression
Localisation
Function
Canonical function: eEF1B2 binds to eEF1D and eEF1G in the eEF1B2DG macromolecular complex and contributes to catalyze the exchange of GDP/GTP for eEF1A during the translation elongation cycle. It was shown that eEF1B2 has the ability to disrupt eEF1A-induced actin organization and so engage eEF1A for protein synthesis (Pittman et al, 2009).
Non-canonical roles: eEF1B2 seems to have other functions inside the cell besides its involvement in translation. Together with eEF1D and eEF1G, it controls the translation fidelity (Le Sourd et al, 2006) and in response to stressors such as heat shock, oxidative stress, and toxins, it mediates the inhibition of protein synthesis. In addition, it seems to have interaction with the cytoskeleton (Khudhair et al., 2014), but the effect of eEF1B2 on actin filaments is still poorly understood (Sasikumar et al, 2012).
Homology
| Organism | Species | Symbol | DNA Identity (%) | PROT Identity (%) |
| Human | H.sapiens | EEF1B2 | 100 | 100 |
| Chimpanzee | P.troglodytes | EEF1B2 | 99.9 | 100 |
| Macaco | M.mulatta | EEF1B2 | 97.6 | 99.6 |
| Wolf | C.lupus | EEF1B2 | 93.0 | 98.2 |
| Cattle | B.taurus | EEF1B2 | 91.1 | 97.8 |
| Mouse | M.musculus | Eef1b2 | 89.2 | 95.6 |
| Rat | R.norvegicus | Eef1b2 | 89.2 | 94.7 |
| Chicken | G.gallus | EEF1B2 | 82.0 | 93.3 |
| Xenopus tropicalis | X.tropicalis | eef1b2 | 78.1 | 85.3 |
| Zebrafish | D.rerio | eef1b2 | 73.8 | 82.6 |
| Fruit fly | D.melanogaster | Ef1beta | 58.7 | 58.8 |
| Mosquito (Anopheles) | A.gambiae | AgaP_AGAP010612 | 60.2 | 62.0 |
| Caenorhabditis | C.elegans | eef-1B.1 | 55.1 | 53.1 |
Table.3 EEF1B2 homology (reworked from htpps://www.ncbi.nlm.nih.gov/homologene)
Mutations
Note

Implicated in
In addition, eEF1B2 is involved in some genomic translocations with the creation of numerous fusion genes (Table.4).
Table.4 EEF1B2 rearrangements: translocations and fusion genes (reworked from: http://www.tumorfusions.org; https://mitelmandatabase.isb-cgc.org/; http://quiver.archerdx.com; http://atlasgeneticsoncology.org//Bands/2q33.html#REFERENCES; https://fusionhub.persistent.co.in/home.html; https://ccsm.uth.edu/FusionGDB/index.html)
[ (?) ] unknown; [ - ] no reference
Article Bibliography
| Pubmed ID | Last Year | Title | Authors |
|---|---|---|---|
| 16080495 | 2005 | Up-regulation of eukaryotic elongation factor-1 subunits in breast carcinoma. | Al-Maghrebi M et al |
| 12932732 | 2003 | Elongation factors in protein biosynthesis. | Andersen GR et al |
| 8294461 | 1994 | Reconstitution in vitro of the valyl-tRNA synthetase-elongation factor (EF) 1 beta gamma delta complex. Essential roles of the NH2-terminal extension of valyl-tRNA synthetase and of the EF-1 delta subunit in complex formation. | Bec G et al |
| 12423334 | 2002 | Regulation of peptide-chain elongation in mammalian cells. | Browne GJ et al |
| 19487283 | 2009 | Cathepsin D and eukaryotic translation elongation factor 1 as promising markers of cellular senescence. | Byun HO et al |
| 25436608 | 2014 | Characterisation of translation elongation factor eEF1B subunit expression in mammalian cells and tissues and co-localisation with eEF1A2. | Cao Y et al |
| 11597139 | 2001 | Comparative genomic analysis of genes encoding translation elongation factor 1B(alpha) in human and mouse shows EEF1B1 to be a recent retrotransposition event. | Chambers DM et al |
| 14519448 | 2003 | Direct and biochemical interaction between dopamine D3 receptor and elongation factor-1Bbetagamma. | Cho DI et al |
| 11866090 | 2002 | Moonlighting functions of polypeptide elongation factor 1: from actin bundling to zinc finger protein R1-associated nuclear localization. | Ejiri S et al |
| 29342219 | 2018 | The expression profile and prognostic significance of eukaryotic translation elongation factors in different cancers. | Hassan MK et al |
| 12721631 | 2003 | An expressed pseudogene regulates the messenger-RNA stability of its homologous coding gene. | Hirotsune S et al |
| 30572058 | 2019 | Translation elongation factor eEF1Bα is identified as a novel prognostic marker of gastric cancer. | Jia L et al |
| 16229838 | 2005 | Three-dimensional reconstruction of the valyl-tRNA synthetase/elongation factor-1H complex and localization of the delta subunit. | Jiang S et al |
| 31845318 | 2020 | New evidence that biallelic loss of function in EEF1B2 gene leads to intellectual disability. | Larcher L et al |
| 16624425 | 2006 | eEF1B: At the dawn of the 21st century. | Le Sourd F et al |
| 23699257 | 2013 | The unexpected roles of eukaryotic translation elongation factors in RNA virus replication and pathogenesis. | Li D et al |
| 9798784 | 1998 | Multiple phosphorylation sites and quaternary organization of guanine-nucleotide exchange complex of elongation factor-1 (EF-1betagammadelta/ValRS) control the various functions of EF-1alpha. | Minella O et al |
| 16675455 | 2006 | Mg2+ and a key lysine modulate exchange activity of eukaryotic translation elongation factor 1B alpha. | Pittman YR et al |
| 8250921 | 1993 | Human elongation factor EF-1 beta: cloning and characterization of the EF1 beta 5a gene and assignment of EF-1 beta isoforms to chromosomes 2,5,15 and X. | Pizzuti A et al |
| 2278101 | 1990 | Eukaryotic protein elongation factors. | Riis B et al |
| 8743958 | 1996 | Immunofluorescence studies of human fibroblasts demonstrate the presence of the complex of elongation factor-1 beta gamma delta in the endoplasmic reticulum. | Sanders J et al |
| 1886777 | 1991 | Nucleotide sequence of human elongation factor-1 beta cDNA. | Sanders J et al |
| 22555874 | 2012 | The many roles of the eukaryotic elongation factor 1 complex. | Sasikumar AN et al |
| 9407120 | 1997 | Recombinant subunits of mammalian elongation factor 1 expressed in Escherichia coli. Subunit interactions, elongation activity, and phosphorylation by protein kinase CKII. | Sheu GT et al |
| 26587907 | 2016 | A non-catalytic N-terminal domain negatively influences the nucleotide exchange activity of translation elongation factor 1Bα. | Trosiuk TV et al |
| 20964681 | 2011 | Unbalanced expression of the translation complex eEF1 subunits in human cardioesophageal carcinoma. | Veremieva M et al |
| 25635048 | 2015 | Evolutionarily conserved binding of translationally controlled tumor protein to eukaryotic elongation factor 1B. | Wu H et al |
| 25500544 | 2015 | The landscape and therapeutic relevance of cancer-associated transcript fusions. | Yoshihara K et al |
| 2026171 | 1991 | Mapping the functional domains of the eukaryotic elongation factor 1 beta gamma. | van Damme H et al |
Other Information
Locus ID:
NCBI: 1933
MIM: 600655
HGNC: 3208
Ensembl: ENSG00000114942
Variants:
dbSNP: 1933
ClinVar: 1933
TCGA: ENSG00000114942
COSMIC: EEF1B2
RNA/Proteins
Expression (GTEx)
Pathways
| Pathway | Source | External ID |
|---|---|---|
| Metabolism of proteins | REACTOME | R-HSA-392499 |
| Translation | REACTOME | R-HSA-72766 |
| Eukaryotic Translation Elongation | REACTOME | R-HSA-156842 |
| Gene Expression | REACTOME | R-HSA-74160 |
Protein levels (Protein atlas)
References
| Pubmed ID | Year | Title | Citations |
|---|---|---|---|
| 34420305 | 2021 | Proteogenomics Integrating Novel Junction Peptide Identification Strategy Discovers Three Novel Protein Isoforms of Human NHSL1 and EEF1B2. | 1 |
| 34420305 | 2021 | Proteogenomics Integrating Novel Junction Peptide Identification Strategy Discovers Three Novel Protein Isoforms of Human NHSL1 and EEF1B2. | 1 |
| 31845318 | 2020 | New evidence that biallelic loss of function in EEF1B2 gene leads to intellectual disability. | 4 |
| 31845318 | 2020 | New evidence that biallelic loss of function in EEF1B2 gene leads to intellectual disability. | 4 |
| 30572058 | 2019 | Translation elongation factor eEF1Bα is identified as a novel prognostic marker of gastric cancer. | 4 |
| 30590147 | 2019 | The protein-binding N-terminal domain of human translation elongation factor 1Bβ possesses a dynamic α-helical structural organization. | 3 |
| 30572058 | 2019 | Translation elongation factor eEF1Bα is identified as a novel prognostic marker of gastric cancer. | 4 |
| 30590147 | 2019 | The protein-binding N-terminal domain of human translation elongation factor 1Bβ possesses a dynamic α-helical structural organization. | 3 |
| 29572982 | 2018 | An update on the biophysical character of the human eukaryotic elongation factor 1 beta: Perspectives from interaction with elongation factor 1 gamma. | 3 |
| 29572982 | 2018 | An update on the biophysical character of the human eukaryotic elongation factor 1 beta: Perspectives from interaction with elongation factor 1 gamma. | 3 |
| 25436608 | 2014 | Characterisation of translation elongation factor eEF1B subunit expression in mammalian cells and tissues and co-localisation with eEF1A2. | 6 |
| 25436608 | 2014 | Characterisation of translation elongation factor eEF1B subunit expression in mammalian cells and tissues and co-localisation with eEF1A2. | 6 |
| 19487283 | 2009 | Cathepsin D and eukaryotic translation elongation factor 1 as promising markers of cellular senescence. | 41 |
| 19487283 | 2009 | Cathepsin D and eukaryotic translation elongation factor 1 as promising markers of cellular senescence. | 41 |
| 15341733 | 2004 | Solution structure of human initiation factor eIF2alpha reveals homology to the elongation factor eEF1B. | 38 |
Citation
Luigi Cristiano, MSc
EEF1B2 (eukaryotic translation elongation factor 1 beta 2)
Atlas Genet Cytogenet Oncol Haematol. 2020-01-01
Online version: http://atlasgeneticsoncology.org/gene/43239/eef1b2-(eukaryotic-translation-elongation-factor-1-beta-2)
