PDCD10 (Programmed cell death 10)
2016-08-01 Urfali-Mamatoglu  , Hasan Huseyin Kazan  , Ufuk Gunduz   AffiliationDepartment of Biological Sciences, Middle East Technical University, Ankara, Turkey. [email protected]; [email protected]; [email protected]
Identity
HGNC
LOCATION
3q26.1
IMAGE

LEGEND
Local order of PDCD10 is shown together with leading and subsequent genes on chromosome 3. The direction of arrows indicates transcriptional directions on the chromosome and arrow sizes approximate gene sizes.
LOCUSID
ALIAS
CCM3,TFAR15
Abstract
PDCD10 is a novel apoptosis regulator which functions in the regulation of cellular proliferation and apoptosis.
DNA/RNA

Boxes are exons and the lines are introns.
Description
The PDCD10 gene is 51,688 bp in length, located on the minus strand and spans 9 exons (NCBI, 2016).
Transcription
3 different alternatively spliced mRNAs (1454, 1313 and 1212 bp long, respectively) that differ only in 5UTRs; 639 bp long open reading frame (NM_007217.3, NM_145859.1, NM_145860.1).
Pseudogene
LOC100128686 programmed cell death 10 pseudogene; located on 8q11.21 (NCBI, 2016).
Proteins
Description
PDCD10 encodes an evolutionarily conserved 212 amino acid long protein (Wang et al, 1999). PDCD10 has an estimated molecular weight of 29 kDa.
Expression
PDCD10 is expressed in all tissues including brain, pancreas, breast, ovary, kidney, liver and lungs (The Human Protein Atlas, 2016).
Localisation
PDCD10 is localized in cytoplasm, near Golgi apparatus and nucleus (Fidalgo et al, 2010).
Function
The PDCD10 protein regulates cell proliferation and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway through interaction with serine/threonine protein kinase STK26 (MST4) (Ma et al, 2007). It also interacts with another serine/threonine kinase, STK25 , and triggers apoptosis under oxidative stress (Zhang et al, 2012). PDCD10 interacts with members of germinal center kinases III subfamily to promote normal Golgi assembly and cell orientation (Fidalgo, 2010). PDCD10 involves in the stabilization of KDR (VEGFR2) signaling and is vital for normal vascular development (He et al, 2010). PDCD10 acts downstream of gamma-protocadherins and regulate neuronal survival (Lin et al, 2010).
Mutations
Germinal
Cerebral cavernous malformations are associated with the mutations in 3 loci; one of which is CCM3/PDCD10. Bergametti et al reported a de novo deletion as well as six other deleterious mutations in PDCD10 gene. Three of these mutations were stated as nonsense mutations, two other mutations were reported to generate aberrant splicing in exon 9 with a frameshift and the last one caused an abnormal splicing in exon 5 without frameshift (Bergametti et al, 2005). In a study with 61 families with cerebral caverous malformations, Guclu et al (2005) identified two identical mutations creating a premature stop codon in exon 7, two frameshift mutations in exon 6 and one additional frameshift mutation in exon 9 (Guclu et al, 2005). In patients without KRIT1 (CCM1) and CCM2 mutations, Verlaan et al (2005) identified two mutations in CCM3 which lead to a truncated PDCD10 protein. One of the mutations was a nonsense mutation in exon 7 caused by a transversion o a C to a T that creates a stop codon and the other one was reported to be an invariant splice acceptor site mutation (Verlaan et al, 2005). Riant et al (2013) reported that, in 13 of 54 CCM3-mutated patients, there are deletions in one or several coding exons; 8 of which deletions are whole gene deletions. In 41 patients, several point mutations leading abnormal splicing, nonsense mutations and small insertions and deletions causing frameshifts and premature stop codons were identified. Additionally, they reported deletions in noncoding exons 1-3 in a 5-year old child with cerebral carcinomas (Riant et al, 3013).
Implicated in
Entity name
Cerebral cavernous malformations
Disease
Cerebral cavernous malformations (CCM) is one of the frequently occurring cerebral vascular abnormalities characterized by abnormally enlarged blood vessels that cause brain hemorrhages and seizures which result in focal neurological deficits (Rigamonti et al, 1998; Bergametti et al, 2005). Bergametti et al identified PDCD10 as the CCM3 gene and reported several mutations in this locus (Bergametti et al, 2005). Several other studies also reported different mutations in PDCD10 gene in patients with cerebral cavernous malformations and cerebral carcinomas (see Mutations section above).
Entity name
Prostate cancer
Note
PDCD10 is expressed in both benign prostatic hyperplasia and prostate cancer with a stronger staining in prostate cancer cases. Germinal center kinases, MST4 and STK25, are also significantly overexpressed in prostate cancer and associated with the PDCD10 expression (Zhang et al, 2014). miR-103 is reported to regulate PDCD10 in prostate cancer and when overexpressed, it suppresses tumor cell proliferation by targeting PDCD10 (Fu et al, 2016).
Entity name
Note
PDCD10 is constitutiely expressed in malignant T cells and cell lines derived from peripheral blood of patients with Sezary syndrome (T cell lymphoma). PDCD10 is found to be constitutively associated with protein phosphatase-2A (PP2A) which is essential in the regulation of cell proliferation and apoptosis in T cell lymphoma. Depletion of PDCD10 was reported to significantly increase apoptosis in various malignant T cells (Lauenborg et al, 2010).
Entity name
Colorectal cancer
Note
Zhang et al (2016) reported that PDCD10 expression was down-regulated in drug-resistant colorectal cancer cells. The expression of PDCD10 was regulated by MIR425 (mature sequence miR-425-5p) which directly targets 3-UTR of PDCD10 (Zhang et al, 2016).
Article Bibliography
| Pubmed ID | Last Year | Title | Authors |
|---|---|---|---|
| 15543491 | 2005 | Mutations within the programmed cell death 10 gene cause cerebral cavernous malformations. | Bergametti F et al |
| 20332113 | 2010 | CCM3/PDCD10 stabilizes GCKIII proteins to promote Golgi assembly and cell orientation. | Fidalgo M et al |
| 26771762 | 2016 | MicroRNA-103 suppresses tumor cell proliferation by targeting PDCD10 in prostate cancer. | Fu X et al |
| 16284570 | 2005 | Mutations in apoptosis-related gene, PDCD10, cause cerebral cavernous malformation 3. | Guclu B et al |
| 20371769 | 2010 | Stabilization of VEGFR2 signaling by cerebral cavernous malformation 3 is critical for vascular development. | He Y et al |
| 20854465 | 2010 | Programmed cell death-10 enhances proliferation and protects malignant T cells from apoptosis. | Lauenborg B et al |
| 17360971 | 2007 | PDCD10 interacts with Ste20-related kinase MST4 to promote cell growth and transformation via modulation of the ERK pathway. | Ma X et al |
| 23801932 | 2013 | CCM3 Mutations Are Associated with Early-Onset Cerebral Hemorrhage and Multiple Meningiomas. | Riant F et al |
| 16380626 | 2005 | CCM3 mutations are uncommon in cerebral cavernous malformations. | Verlaan DJ et al |
| 20229348 | 1999 | cDNA cloning and expression of an apoptosis-related gene, humanTFAR15 gene. | Wang Y et al |
| 22652780 | 2012 | PDCD10 interacts with STK25 to accelerate cell apoptosis under oxidative stress. | Zhang H et al |
Other Information
Locus ID:
NCBI: 11235
MIM: 609118
HGNC: 8761
Ensembl: ENSG00000114209
Variants:
dbSNP: 11235
ClinVar: 11235
TCGA: ENSG00000114209
COSMIC: PDCD10
RNA/Proteins
Expression (GTEx)
Protein levels (Protein atlas)
References
| Pubmed ID | Year | Title | Citations |
|---|---|---|---|
| 36723700 | 2024 | Comprehensive CCM3 Mutational Analysis in Two Patients with Syndromic Cerebral Cavernous Malformation. | 0 |
| 38158408 | 2024 | Programmed cell death 10 can be used as a potential biomarker for ankylosing spondylitis diagnosis and treatment. | 1 |
| 38320423 | 2024 | Knockdown of CCM3 promotes angiogenesis through activation and nuclear translocation of YAP/TAZ. | 1 |
| 38657460 | 2024 | Study on the role of CCM3 gene and lead exposure induced neurotoxicity through neurovascular units. | 0 |
| 36723700 | 2024 | Comprehensive CCM3 Mutational Analysis in Two Patients with Syndromic Cerebral Cavernous Malformation. | 0 |
| 38158408 | 2024 | Programmed cell death 10 can be used as a potential biomarker for ankylosing spondylitis diagnosis and treatment. | 1 |
| 38320423 | 2024 | Knockdown of CCM3 promotes angiogenesis through activation and nuclear translocation of YAP/TAZ. | 1 |
| 38657460 | 2024 | Study on the role of CCM3 gene and lead exposure induced neurotoxicity through neurovascular units. | 0 |
| 35848121 | 2023 | PDCD10 promotes proliferation, migration, and invasion of osteosarcoma by inhibiting apoptosis and activating EMT pathway. | 5 |
| 35848121 | 2023 | PDCD10 promotes proliferation, migration, and invasion of osteosarcoma by inhibiting apoptosis and activating EMT pathway. | 5 |
| 35963638 | 2022 | PDCD10 promotes the aggressive behaviors of pituitary adenomas by up-regulating CXCR2 and activating downstream AKT/ERK signaling. | 5 |
| 35963638 | 2022 | PDCD10 promotes the aggressive behaviors of pituitary adenomas by up-regulating CXCR2 and activating downstream AKT/ERK signaling. | 5 |
| 32407167 | 2021 | CircSMARCA5 Facilitates the Progression of Prostate Cancer Through miR-432/PDCD10 Axis. | 22 |
| 33604894 | 2021 | Improving clinical interpretation of five KRIT1 and PDCD10 intronic variants. | 1 |
| 34108959 | 2021 | Programmed Cell Death 10 Mediated CXCL2-CXCR2 Signaling in Regulating Tumor-Associated Microglia/Macrophages Recruitment in Glioblastoma. | 16 |
Citation
Urfali-Mamatoglu ; Hasan Huseyin Kazan ; Ufuk Gunduz
PDCD10 (Programmed cell death 10)
Atlas Genet Cytogenet Oncol Haematol. 2016-08-01
Online version: http://atlasgeneticsoncology.org/gene/43399/pdcd10-(programmed-cell-death-10)
