PRND (Prion Protein 2 (Dublet))

2013-12-01   Gabriele Giachin , Giuseppe Legname 

Laboratory of Prion Biology, Department of Neuroscience, Scuola Internazionale Superiore di Studi Avanzati (SISSA), via Bonomea 265, Trieste, Italy

Identity

HGNC
LOCATION
20p13
IMAGE
Atlas Image
LEGEND
Schematic structural representation of the human PRN locus on chromosome 20p13 containing PRNP, PRND and the putative testis-specific prion protein (PRNT) genes.
LOCUSID
ALIAS
DOPPEL,DPL,PrPLP,dJ1068H6.4
FUSION GENES

DNA/RNA

Note

The Prnd gene was originally identified in mice during DNA sequencing of the cosmid clone isolated from the I/LnJ inbred mice strain (Lee et al., 1998). This gene was discovered in transgenic (Tg) mice where the Prnp gene was ablated (Prnp0/0 mice strains) resulting in a diseased phenotype characterized by loss of Purkinje cells in the cerebellum. Interestingly, Prnp deletion in these mouse lines resulted in the formation of a chimeric Prnd transcript under the control of the strong Prnp promoter. Thus, these studies have shown that only the ectopic expression of Dpl, rather than the absence of the Prnp gene, caused neurodegeneration (Li et al., 2000).
Atlas Image
Schematic representation of the PRND gene. Exon 1 starts at 4705556 bp and ends at 4702615 bp. Exon 2 containing the Doppel open reading frame (ORF) starts at 4705187 bp and ends at 4709106 bp. The sequence surrounding the splice acceptor site is shown with intronic nucleotides in lower case, exonic nucleotides in capital letters and Met start codon ATG underlined.

Description

The PRND gene includes two exons separated by one intron. Exon 2 encodes for the Doppel protein.

Transcription

Prnd RNA transcription has been reported in different tissues of adult wild-type (WT) mice including testis, heart, spleen and skeletal muscle (Li et al., 2000). In neonatal mice up to 3 weeks, Prnd RNA has been detected in brain blood vessel endothelial cells (Li et al., 2000).

Pseudogene

Prnd pseudogenes have been identified in non-mammalian organisms as Anolis (lizard) and Xenopus (frog) (Harrison et al., 2010).

Proteins

Note

Doppel tertiary structure has a fold similar to that of the cellular prion protein, PrPC (encoded by PRNP or Prnp genes) although it shares approximately 25% of aminoacidic sequence identity with PrPC.
Atlas Image
A) Primary sequence alignment between human PrPC (GenBank: BAG32277.1) and human Doppel (NCBI Reference Sequence: NP_036541.2). B) Secondary structure motives of human PrPC and Doppel. Highlighted: signal peptides, N-linked glycosylation sites (CHO), disulfide bridges (S-S) and Glycosylphosphatidylinisotol (GPI) anchor. C) Tertiary NMR structures of Doppel (pdb id 1LG4) and PrPC (2LSB).

Description

The immature form of human Doppel includes 176 residues with two N- and C-terminal signal peptides cleaved during protein maturation. The mature sequence includes 126 amino acids spanning from residues 27 to 152, with a molecular weight of approximately 14.5 kDa. Tryptic digestion and mass spectroscopy studies have identified two distinct disulfide bridges (Cys109-Cys143 and Cys95-Cys148) which strongly stabilize the Doppel folding (Baillod et al., 2013; Silverman et al., 2000; Whyte et al., 2003). PNGase F digestion and immunoblots have reported two N-linked glycosylation sites at codons 99 and 111. The GPI anchor targets the protein at the extracellular membrane. NMR structures of recombinant human and mouse Dopple have been solved (Luhrs et al., 2003; Mo et al., 2001). The NMR structures of the N-terminal murine and ovine signal peptides (residues 1-30) have also been determined (Papadopoulos et al., 2006). The human Doppel NMR structure features a short flexible N-terminal segment comprising residues 24-51 and a globular domain including four α-helices (α1: residues 72-80; α2a: residues 101-115; α2b: residues 117-121; α3: residues 127-141) and a short two-stranded anti-parallel β-sheet (β1: residues 58-60; β2: residues 88-90) (Luhrs et al., 2003).

Expression

Under physiological conditions Doppel is mostly expressed in testis and, in particular, in spermatozoa and Sertoli cells (Behrens et al., 2002; Peoch et al., 2002). Additionally, Doppel is expressed with PrPC in spleen cells, notably B lymphocytes, granulocytes and dendritic cells (Cordier-Dirikoc et al., 2008).

Localisation

Doppel is attached to the cell membrane through its GPI anchor (Silverman et al., 2000). A study has shown Doppel localization in detergent-resistant membranes or lipid rafts (Caputo et al., 2010).

Function

The Doppel expression in spermatozoa and Sertoli cells infers a role in spermatogenesis. Male Tg mice knock-out for Prnd were sterile, clearly indicating that Doppel plays a role in male reproduction as critical regulator of spermatogenesis and sperm-egg interaction (Behrens et al., 2002). Doppel may enhance in vitro ovine spermatozoa fertilizing ability (Pimenta et al., 2012). Doppel has been implicated in early testis differentiation (Kocer et al., 2007). The detection of Prnd mRNA in brain blood vessel endothelial cells might indicate a possible role in the development of brain blood vessels (Li et al., 2000). The observation that Doppel is expressed with PrPC in B lymphocytes, granulocytes and dendritic cells argues for a role in cell-cell interaction in the immunosystem (Cordier-Dirikoc et al., 2008). Several evidence showed that Doppel is able to coordinate in vitro the binding of copper ions with high affinity (Cereghetti et al., 2004; La Mendola et al., 2010; Qin et al., 2003).

Mutations

Note

Different polymorphic variants have been identified in PRND. The effect of polymorphisms in Doppel function and their implication in the diseases have not been fully clarified.

Germinal

S6I, S22P, T26P, H31R, P56L, F70L, L149S, T174M (Clark et al., 2003; Moore et al., 1999; Peoch et al., 2000; Schroder et al., 2001).

Implicated in

Entity name
Ectopic Doppel expression associated with Purkinje cell neurodegeneration in transgenic mouse models.
Note
Beside its role in male reproductive system, Doppel has attracted interest for its neurotoxic properties when ectopically expressed in the brain of Tg mice knock-out for the prion protein gene (Prnp0/0 mice). In these mice, denoted as Ngsk PrP-/-, the Doppel-encoding exon was expressed as chimeric mRNA due to the intergenic splicing taking place between Prnp and Prnd. As a result, Prnd became abnormally regulated under the control of Prnp promoter and ectopically expressed in the brain and, in particular, in neurons and glial cells (Li et al., 2000). Similar non-physiological Doppel expression was reported in other Tg mouse lines knock-out for Prnp such as Rcm0 and Zrch mice (Moore et al., 2001; Rossi et al., 2001). Doppel expression in the brain is neurotoxic and causes Purkinje cell degeneration in these mouse models. Doppel neurotoxicity is antagonized by the PrPC N-terminal domain (Atarashi et al., 2003; Yamaguchi et al., 2004). The neuroprotective PrPC role against ectopic Doppel expression has been reported also in human neuronal SH-SY5Y cells (Li et al., 2009) confirming the dominant-negative effects of the PrPC N-terminal region (Yoshikawa et al., 2008). The molecular mechanisms leading to Doppel-induced neurodegeneration in Purkinje and granular cells are still controversial. An earlier study has reported that the chimeric form of Doppel fused to a Fc domain binds specifically granule cells and causes neurodegeneration, raising the possibility that these specific cells expressed a still unidentified protein that mediates the Doppel-induced neurotoxicity (Legname et al., 2002). Oxidative stress may play a role in Doppel-induced neuronal death since NOS activity is induced by Doppel in vitro and in vivo (Cui et al., 2003; Wong et al., 2001). Two independent groups have reported that BAX contributes to Doppel-induced apoptosis (Didonna et al., 2012; Heitz et al., 2007) and that BCL-2 antagonizes Doppel neurotoxicity (Heitz et al., 2008). Another work has observed that ectopic Doppel expression in the brain elicits neurodegeneration through the binding of two metalloproteinase namely the alpha-1-inhibitor-3 (α1I3) and the alpha-2-macroglobin (α2M) (Benvegnu et al., 2009).
Entity name
Abnormal Doppel expression levels in human astrocytomas and other non-glial brain tumor specimens
Note
Doppel is aberrantly expressed in astrocytic tumors where it displays cytoplasmic, nuclear and lysosomal localization and molecular properties (i.e. altered glycosilation pattern) different from Doppel as normally expressed in testis (Azzalin et al., 2006; Azzalin et al., 2008; Comincini et al., 2006; Comincini et al., 2004; Comincini et al., 2007; Rognoni et al., 2010; Sbalchiero et al., 2008).

Bibliography

Pubmed IDLast YearTitleAuthors
127593612003Deletion of N-terminal residues 23-88 from prion protein (PrP) abrogates the potential to rescue PrP-deficient mice from PrP-like protein/doppel-induced Neurodegeneration.Atarashi R et al
172011762006The prion-like protein Doppel (Dpl) interacts with the human receptor for activated C-kinase 1 (RACK1) protein.Azzalin A et al
189365262008The doppel (Dpl) protein influences in vitro migration capability in astrocytoma-derived cells.Azzalin A et al
241438662013Prion versus doppel protein misfolding: new insights from replica-exchange molecular dynamics simulations.Baillod P et al
121105782002Absence of the prion protein homologue Doppel causes male sterility.Behrens A et al
195362842009Prion protein paralog doppel protein interacts with alpha-2-macroglobulin: a plausible mechanism for doppel-mediated neurodegeneration.Benvegnù S et al
198889172009Doppel and PrPC co-immunoprecipitate in detergent-resistant membrane domains of epithelial FRT cells.Caputo A et al
152180282004Copper(II) binding to the human Doppel protein may mark its functional diversity from the prion protein.Cereghetti GM et al
129753092003The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment.Clark HF et al
173900342007Diagnostic value of PRND gene expression profiles in astrocytomas: relationship to tumor grades of malignancy.Comincini S et al
186048672008Expression profiles of prion and doppel proteins and of their receptors in mouse splenocytes.Cordier-Dirikoc S et al
127991442003Analysis of doppel protein toxicity.Cui T et al
225611612012The role of Bax and caspase-3 in doppel-induced apoptosis of cerebellar granule cells.Didonna A et al
202062522010Genomic assessment of the evolution of the prion protein gene family in vertebrates.Harrison PM et al
180855632008BCL-2 counteracts Doppel-induced apoptosis of prion-protein-deficient Purkinje cells in the Ngsk Prnp(0/0) mouse.Heitz S et al
174438162007BAX contributes to Doppel-induced apoptosis of prion-protein-deficient Purkinje cells.Heitz S et al
172268162007Goat PRND expression pattern suggests its involvement in early sex differentiation.Kocer A et al
204115302010A doppel alpha-helix peptide fragment mimics the copper(II) interactions with the whole protein.La Mendola D et al
97997901998Complete genomic sequence and analysis of the prion protein gene region from three mammalian species.Lee IY et al
124468432002Prion and doppel proteins bind to granule cells of the cerebellum.Legname G et al
109301322000Identification of a novel gene encoding a PrP-like protein expressed as chimeric transcripts fused to PrP exon 1/2 in ataxic mouse line with a disrupted PrP gene.Li A et al
191299492009Doppel-induced cytotoxicity in human neuronal SH-SY5Y cells is antagonized by the prion protein.Li P et al
125952652003NMR structure of the human doppel protein.Lührs T et al
115741472001The prion gene complex encoding PrP(C) and Doppel: insights from mutational analysis.Mastrangelo P et al
112262432001Two different neurodegenerative diseases caused by proteins with similar structures.Mo H et al
105254061999Ataxia in prion protein (PrP)-deficient mice is associated with upregulation of the novel PrP-like protein doppel.Moore RC et al
117346252001Doppel-induced cerebellar degeneration in transgenic mice.Moore RC et al
163885912006NMR solution structure of the peptide fragment 1-30, derived from unprocessed mouse Doppel protein, in DHPC micelles.Papadopoulos E et al
108256572000First report of polymorphisms in the prion-like protein gene (PRND): implications for human prion diseases.Peoc'h K et al
122004352002The human "prion-like" protein Doppel is expressed in both Sertoli cells and spermatozoa.Peoc'h K et al
218066892012The prion-like protein Doppel enhances ovine spermatozoa fertilizing ability.Pimenta J et al
124828512003The PrP-like protein Doppel binds copper.Qin K et al
209811462010Biochemical signatures of doppel protein in human astrocytomas to support prediction in tumor malignancy.Rognoni P et al
111792142001Onset of ataxia and Purkinje cell loss in PrP null mice inversely correlated with Dpl level in brain.Rossi D et al
186070682008Altered cellular distribution and sub-cellular sorting of doppel (Dpl) protein in human astrocytoma cell lines.Sbalchiero E et al
117022132001Polymorphisms within the prion-like protein gene (Prnd) and their implications in human prion diseases, Alzheimer's disease and other neurological disorders.Schröder B et al
108421802000Doppel is an N-glycosylated, glycosylphosphatidylinositol-anchored protein. Expression in testis and ectopic production in the brains of Prnp(0/0) mice predisposed to Purkinje cell loss.Silverman GL et al
126654262003Stability and conformational properties of doppel, a prion-like protein, and its single-disulphide mutant.Whyte SM et al
113126112001Induction of HO-1 and NOS in doppel-expressing mice devoid of PrP: implications for doppel function.Wong BS et al
151945012004Doppel-induced Purkinje cell death is stoichiometrically abrogated by prion protein.Yamaguchi N et al
185623112008Dominant-negative effects of the N-terminal half of prion protein on neurotoxicity of prion protein-like protein/doppel in mice.Yoshikawa D et al

Other Information

Locus ID:

NCBI: 23627
MIM: 604263
HGNC: 15748
Ensembl: ENSG00000171864

Variants:

dbSNP: 23627
ClinVar: 23627
TCGA: ENSG00000171864
COSMIC: PRND

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000171864ENST00000305817Q9UKY0

Expression (GTEx)

0
50
100
150

Pathways

PathwaySourceExternal ID
Metabolism of proteinsREACTOMER-HSA-392499
Post-translational protein modificationREACTOMER-HSA-597592
Post-translational modification: synthesis of GPI-anchored proteinsREACTOMER-HSA-163125

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.62
170470932006Significant association of a M129V independent polymorphism in the 5' UTR of the PRNP gene with sporadic Creutzfeldt-Jakob disease in a large German case-control study.16
122004352002The human "prion-like" protein Doppel is expressed in both Sertoli cells and spermatozoa.13
147450792004Polymorphisms within the prion (PrP) and prion-like protein (Doppel) genes in AD.9
149708452004Polymorphisms in the prion protein gene and in the doppel gene increase susceptibility for Creutzfeldt-Jakob disease.8
193632672009Earlier onset of Alzheimer's disease: risk polymorphisms within PRNP, PRND, CYP46, and APOE genes.7
193632672009Earlier onset of Alzheimer's disease: risk polymorphisms within PRNP, PRND, CYP46, and APOE genes.7
152031152004Human Doppel and prion protein share common membrane microdomains and internalization pathways.6
269504222016Targeting prion-like protein doppel selectively suppresses tumor angiogenesis.6
117022132001Polymorphisms within the prion-like protein gene (Prnd) and their implications in human prion diseases, Alzheimer's disease and other neurological disorders.5

Citation

Gabriele Giachin ; Giuseppe Legname

PRND (Prion Protein 2 (Dublet))

Atlas Genet Cytogenet Oncol Haematol. 2013-12-01

Online version: http://atlasgeneticsoncology.org/gene/44172/prnd-(prion-protein-2-(dublet))