OTX2 (orthodenticle homeobox 2)
2010-09-01 Matthew Wortham   AffiliationDepartment of Pathology, Duke University Medical Center, DUMC-3156, 199B-MSRB, Research Drive, Durham, NC 27710, USA
DNA/RNA
Description
Total gene sequence: 9757 bp.
Transcription
From minus strand. Isoform a: 5 exons, 4 introns; isoform b: 3 exons, 2 introns.
Isoform a: Full-length unspliced transcript: 9757 bp; spliced transcript: 2209 bp;
Isoform b: Full-length unspliced transcript: 9670 bp; spliced transcript: 2082 bp.
Isoform a: Full-length unspliced transcript: 9757 bp; spliced transcript: 2209 bp;
Isoform b: Full-length unspliced transcript: 9670 bp; spliced transcript: 2082 bp.
Pseudogene
OTX2P1 located at 9q21.
Proteins
Note
Isoforms a and b share the same coding exons, therefore both isoforms encode full-length (289 amino acid) Otx2 protein.

Otx2 protein domains. Domains were defined based on sequence conservation and, when possible, functional analysis as described in Chau et al., 2000 and Chatelain et al., 2006. Conserved OTX family domain identified in the CDD database (Marchler-Bauer et al., 2009). Domain abbreviations and boundaries are as follows: HD: Paired-class homeobox domain, spans amino acids (aa) 37-97; NRS: nuclear retention signal, spans aa 117-146; grey box: WSP domain, spans aa 150-159; OTX: OTX family domain, spans aa 178-243; TA: transactivation domain, comprised of two separate transactivation motifs spanning aa 255-267 and aa 273-285; b: basic regions (aa 36-42, aa 89-94, and aa 107-114); Q: polyglutamine repeat (aa 95-101).
Description
289 amino acids, see diagram for domain organization.
Expression
Rostral neural tube (mid-late gestation; Larsen et al., 2010), hippocampus, cerebellar rhombic lip, choroid plexus (Larsen et al., 2010), retinal pigment epithelium (Glubrecht et al., 2009; Larsen et al., 2009). Characterized in rodents: epiblast (Fossat et al., 2006), anterior neural ectoderm and anterior visceral endoderm (Fossat et al., 2006), external granular layer of the postnatal cerebellum (Frantz et al., 1994), posterior lobes of the adult cerebellum (Fossat et al., 2006).
Localisation
Predominately nuclear but in some cell types can be retained in the cytoplasm (Baas et al., 2000) as well as transferred from cell to cell (Sugiyama et al., 2008).
Function
Homeobox transcription factor, binds the DNA sequence TAATCC (Chatelain et al., 2006). OTX2 plays a critical role in anteroposterior patterning of the embryo (Matsuo et al., 1995), anterior neuroectoderm formation (Acampora et al., 1995), neuronal differentiation in various CNS compartments (Vernay et al., 2005; Omodei et al., 2008), and experience-induced plasticity (Sugiyama et al., 2009).
Mutations
Germinal
Dominant-inherited OTX2 mutations exhibiting variable penetrance have been associated with developmental defects of the eye (Ragge et al., 2005; Wyatt et al., 2008; see the "Implicated in" section below for further discussion) and pituitary (Diaczok et al., 2008) as well as recurrent seizure disorders (Ragge et al., 2005). None associated with hereditary tumor predisposition syndromes.
Somatic
None detected in medulloblastoma.
Implicated in
Entity name
Pediatric CNS cancer (medulloblastoma)
Prognosis
5-year survival rates average 50-60%; predictors of poor outcome include young age (younger than 3 years old) and presence of metastases. OTX2 copy number gain has been associated with shorter survival (Adamson et al., 2010).
Cytogenetics
Various broad and focal copy number changes have been identified in medulloblastoma (reviewed in: Northcott et al., 2010), whereas OTX2 is the most common target of focal copy number gain in the medulloblastoma genome (Adamson et al., 2010).
Oncogenesis
Otx2 is overexpressed in the majority (~74%) of medulloblastomas (Adamson et al., 2010). A subset of these tumors (~21%) harbor copy number gains of the OTX2 genomic locus; the mechanism of Otx2 overexpression in the remaining tumors remains unidentified. Otx2 is distinctly overexpressed in Shh-independent medulloblastomas (i.e. tumor subtypes not expressing gene signatures of Shh pathway activation; Adamson et al., 2010). Otx2 has been implicated in medulloblastoma tumor progression and is required for tumor maintenance. One mechanism of Otx2 oncogenic activity is transcriptional activation of MYC (Adamson et al., 2010).
Entity name
Retinoblastoma
Cytogenetics
Secondary events cooperating with loss of Rb gene function have remained elusive. However, genomewide copy number analysis has revealed recurrent regions of gain or loss at the megabase resolution, and chromosome 14 aberrations have indeed been described (Zielinski et al., 2005).
Oncogenesis
Considering the restricted expression pattern of OTX2 mRNA in adult tissues (Boon et al., 2002) and the well-established oncogenic function of Otx2 in medulloblastomas (Adamson et al., 2010), expression of Otx2 in retinoblastoma may indicate a role for this gene in retinoblastoma pathogenesis (Glubrecht et al., 2009). Interestingly, Otx2 is expressed in the most undifferentiated compartments of retinoblastomas (Glubrecht et al., 2009). Although, Otx2 is expressed broadly among retinoblastoma samples, its potential role as an oncogene in this tumor type has not been experimentally assessed; the possibility that Otx2 is solely a cell lineage marker maintained in transformed retinal progenitor cells has yet to be excluded based on functional studies.
Entity name
Coloboma
Note
Developmental defects of the eye.
Disease
Coloboma, defined as a fissure in the ocular tissue (Onwochei et al., 2000). These result from incomplete closure of the fetal fissure (an invagination of the optic stalk and optic vesicle), whose function is to provide a scaffold for the formation of the optic cup and for the vessels responsible for retinal vascularization. Colobomata are predominately developmental defects that present at birth. Various genes, including OTX2, have been implicated in hereditary syndromes predisposing to coloboma (Omwochei et al., 2000; Wyatt et al., 2008), and sporadic cases have implicated teratogens, though evidence implicating particular agents is generally anecdotal (Omwochei et al., 2000).
Cytogenetics
Germline OTX2 mutations have been identified in patients with bilateral eye defects including colobomata and anophthalmia (Wyatt et al., 2008).
Entity name
Anophthalmia and microphthalmia (absent or small eyes, respectively)
Note
Developmental defects of the eye.
Disease
Microphthalmia is clinically defined as an eye with an axial diameter measuring at least two standard deviations below the mean for the corresponding age group (Omwochei et al., 2000), whereas anophthalmia is diagnosed when no clinically apparent eye structure is present. Those affected generally harbor bilateral malformations. Like coloboma, some forms of anophthalmia/microphthalmia are clearly inheritable, while for other cases environmental factors have been implicated but not definitively so (Verma et al., 2007). Anophthalmia/microphthalmia can present as secondary malformations following colobomata.
Cytogenetics
Various genes have been implicated, including SOX2 (autosomal dominant inheritance), OTX2 (autosomal dominant), CHX10 (autosomal recessive), and RAX (autosomal recessive; Verma et al., 2007; Wyatt et al., 2008).
Article Bibliography
| Pubmed ID | Last Year | Title | Authors |
|---|---|---|---|
| 7588062 | 1995 | Forebrain and midbrain regions are deleted in Otx2-/- mutants due to a defective anterior neuroectoderm specification during gastrulation. | Acampora D et al |
| 20028867 | 2010 | OTX2 is critical for the maintenance and progression of Shh-independent medulloblastomas. | Adamson DC et al |
| 10891582 | 2000 | The subcellular localization of Otx2 is cell-type specific and developmentally regulated in the mouse retina. | Baas D et al |
| 12119410 | 2002 | An anatomy of normal and malignant gene expression. | Boon K et al |
| 16607563 | 2006 | Molecular dissection reveals decreased activity and not dominant negative effect in human OTX2 mutants. | Chatelain G et al |
| 10984472 | 2000 | Functional domains of the cone-rod homeobox (CRX) transcription factor. | Chau KY et al |
| 18728160 | 2008 | A novel dominant negative mutation of OTX2 associated with combined pituitary hormone deficiency. | Diaczok D et al |
| 16845372 | 2006 | Temporal and spatial delineation of mouse Otx2 functions by conditional self-knockout. | Fossat N et al |
| 7931541 | 1994 | Otx1 and Otx2 define layers and regions in developing cerebral cortex and cerebellum. | Frantz GD et al |
| 19686387 | 2009 | Differential CRX and OTX2 expression in human retina and retinoblastoma. | Glubrecht DD et al |
| 20354145 | 2010 | Expression of the homeobox genes OTX2 and OTX1 in the early developing human brain. | Larsen KB et al |
| 18984618 | 2009 | CDD: specific functional annotation with the Conserved Domain Database. | Marchler-Bauer A et al |
| 7590242 | 1995 | Mouse Otx2 functions in the formation and patterning of rostral head. | Matsuo I et al |
| 20043721 | 2010 | Genomics of medulloblastoma: from Giemsa-banding to next-generation sequencing in 20 years. | Northcott PA et al |
| 18820178 | 2008 | Anterior-posterior graded response to Otx2 controls proliferation and differentiation of dopaminergic progenitors in the ventral mesencephalon. | Omodei D et al |
| 11094243 | 2000 | Ocular colobomata. | Onwochei BC et al |
| 15846561 | 2005 | Heterozygous mutations of OTX2 cause severe ocular malformations. | Ragge NK et al |
| 19298552 | 2009 | From brain formation to plasticity: insights on Otx2 homeoprotein. | Sugiyama S et al |
| 18039390 | 2007 | Anophthalmia and microphthalmia. | Verma AS et al |
| 15888661 | 2005 | Otx2 regulates subtype specification and neurogenesis in the midbrain. | Vernay B et al |
| 18781617 | 2008 | Novel heterozygous OTX2 mutations and whole gene deletions in anophthalmia, microphthalmia and coloboma. | Wyatt A et al |
| 15834944 | 2005 | Detection of chromosomal imbalances in retinoblastoma by matrix-based comparative genomic hybridization. | Zielinski B et al |
Other Information
Locus ID:
NCBI: 5015
MIM: 600037
HGNC: 8522
Ensembl: ENSG00000165588
Variants:
dbSNP: 5015
ClinVar: 5015
TCGA: ENSG00000165588
COSMIC: OTX2
RNA/Proteins
Expression (GTEx)
Protein levels (Protein atlas)
References
| Pubmed ID | Year | Title | Citations |
|---|---|---|---|
| 38674001 | 2024 | The OTX2 Gene Induces Tumor Growth and Triggers Leptomeningeal Metastasis by Regulating the mTORC2 Signaling Pathway in Group 3 Medulloblastomas. | 0 |
| 38674001 | 2024 | The OTX2 Gene Induces Tumor Growth and Triggers Leptomeningeal Metastasis by Regulating the mTORC2 Signaling Pathway in Group 3 Medulloblastomas. | 0 |
| 36368868 | 2023 | OTX2 duplications: a recurrent cause of oculo-auriculo-vertebral spectrum. | 4 |
| 36403175 | 2023 | Genetic alterations of TP53 and OTX2 indicate increased risk of relapse in WNT medulloblastomas: "it's a numbers game"-implications for WNT medulloblastoma dose-reduction clinical trials. | 0 |
| 36649236 | 2023 | The LHX2-OTX2 transcriptional regulatory module controls retinal pigmented epithelium differentiation and underlies genetic risk for age-related macular degeneration. | 1 |
| 36368868 | 2023 | OTX2 duplications: a recurrent cause of oculo-auriculo-vertebral spectrum. | 4 |
| 36403175 | 2023 | Genetic alterations of TP53 and OTX2 indicate increased risk of relapse in WNT medulloblastomas: "it's a numbers game"-implications for WNT medulloblastoma dose-reduction clinical trials. | 0 |
| 36649236 | 2023 | The LHX2-OTX2 transcriptional regulatory module controls retinal pigmented epithelium differentiation and underlies genetic risk for age-related macular degeneration. | 1 |
| 34791963 | 2022 | Identification of a novel de novo variant in OTX2 in a patient with congenital microphthalmia using targeted next-generation sequencing followed by prenatal diagnosis. | 1 |
| 35417297 | 2022 | An OTX2 Gene Mutation Causing a More Severe Retinal Phenotype in a Female RPGR Mutation Carrier. | 1 |
| 34791963 | 2022 | Identification of a novel de novo variant in OTX2 in a patient with congenital microphthalmia using targeted next-generation sequencing followed by prenatal diagnosis. | 1 |
| 35417297 | 2022 | An OTX2 Gene Mutation Causing a More Severe Retinal Phenotype in a Female RPGR Mutation Carrier. | 1 |
| 33386644 | 2021 | OTX2 regulates CFTR expression during endoderm differentiation and occupies 3' cis-regulatory elements. | 2 |
| 33386644 | 2021 | OTX2 regulates CFTR expression during endoderm differentiation and occupies 3' cis-regulatory elements. | 2 |
| 31845906 | 2020 | Congenital pituitary hypoplasia model demonstrates hypothalamic OTX2 regulation of pituitary progenitor cells. | 25 |
Citation
Matthew Wortham
OTX2 (orthodenticle homeobox 2)
Atlas Genet Cytogenet Oncol Haematol. 2010-09-01
Online version: http://atlasgeneticsoncology.org/gene/46429
