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CDC25A (Cell division cycle 25A)

Identity

Other namesCDC25A2
HGNC (Hugo) CDC25A
LocusID (NCBI) 993
Location 3p21
Location_base_pair Starts at 48198668 and ends at 48229801 bp from pter ( according to hg19-Feb_2009)  [Mapping]
Local_order The gene is located telomeric to CAMP (cathelicidin antimicrobial peptide) and centromeric to LOC729349 (a pseudogene similar to 60S ribosomal protein L17 (L23)). The gene starts at 48,173,672 bp from pter and ends at 48,204,805 bp from pter with a total size of 31,133 bases.

DNA/RNA

 
  Genomic organization of human CDC25A gene on chromosome 3 p-ter.
Description CDC25A is about 31.13 Kb located on the short (p) arm of chromosome 3, in the centromere-to-telomere orientation. The gene has 15 exons and the start codon is located at the end of exon 1 and stop codon in the beginning of exon 15.
Transcription The CDC25A transcript is 3704 bp in length. So far there are two major transcript variant have been reported, CDC25A1 and A2. The transcript variant CDC25A2, has a deletion of 120 nucleotide (exon 6) resulted in a protein having truncation of 40 amino acid (between amino acid 143-182). However, both the N-terminal and C-terminal end of the protein is the same in both splice variant.

Protein

 
  Domains of different isoforms of CDC25A (A1 and A2). The splice variant A2 lacks an in-frame exon (exon 6) encoding 40 amino acids (amino acid 143-182), however, have the same N- and C-termini compared to isoform A1. The approx. molecular weight of each isoform is mentioned in parenthesis.
Description The full length CDC25A protein consists of 524 amino acids with an estimated molecular weight of 59 kDa. The other reported isoform CDC25A2, consists of 484 amino acids with a molecular weight of 54.4 kDa. Both the isoforms have the same N- and C-terminal end, thus expected to have similar catalytic activity. The N-terminal regulatory domain contains several phosphorylation sites and show low sequence homology between CDC25 family members, whereas C-terminal end has conserved Rhodanese homology domain containing the active site cysteine. The catalytic site contain the CX5R motif (C= cysteine; X= any amino acid; R= arginine) common to all protein tyrosine phosphatases.
Expression CDC25A is expressed early during embryonic stages and in adults it is expressed in a variety of normal cells and tissues. CDC25A is a highly expressed gene in a variety of human cancers including breast, esophageal, gastric, lung, thyroid, head and neck cancers and also in high grade lymphomas.
Localisation CDC25A initially believed to be a nuclear protein. But using fluorescence loss in photobleaching (FLIP) the more dynamic nuclear-cytosolic shuttling of CDC25A localization have been reported. At the very N-terminus end between amino acid 38-59, the nuclear export sequence (NES) is located, whereas between amino acid 272-294, a bipartite nuclear localization signal (NLS) proved to be important for its nuclear localization.
Function - It is a member of the M-phase inducer (MPI) phosphatase family protein, which not only regulates mitotic progression by activating mitotic CDKs in a dosage-dependent manner, it is also equally important for G1 to S-phase transition.
- During G1 to S transition, it activates CDK2 by removing two inhibitory phosphates on residues threonine 14 and tyrosine 15. During G2/M transition CDC25A similarly regulates the activity of CDK1 (CDC2).
- It is an important checkpoint protein in response to damage by ionizing radiation (IR), ultraviolet light (UV), replication inhibitor and by various DNA damaging agents. In response to DNA damage, CDC25A undergoes CHK1/CHK2-mediated phosphorylation followed by ubiquitination-dependent degradation leading to growth arrest in a p53-independent manner.
- CDC25A is essential for early embryonic development as Cdc25A-null mice die in utero by embryonic day 7.
- CDC25A is overexpressed in a variety of human cancers including breast, esophageal, gastric, lung, thyroid, head and neck cancers and lymphomas. CDC25A overexpression at least in breast cancer is mainly due to post-translation stabilization as oppose to gene amplification or transcriptional upregulation.
- CDC25A protein level is important for oncogene-induced transformation and mouse mammary tumor virus (MMTV)-neu/ras induced mammary tumorigenesis.
- During early cell cycle progression glycogen synthase kinase 3-beta (GSK-3β) can phosphorylate and degrade CDC25A, thus maintain the lower cellular levels of CDC25A. Interestingly, the same report showed that overproduction of CDC25A in human cancers is correlated to the inactivation of GSK-3β.
- It is an inhibitor of apoptosis by inhibiting apoptosis signal-regulating kinase 1 (ASK1).
- CDC25A plays an important role in spermatogenesis as decreased transcript level of Cdc25A is correlated with spermatogenic failure and failed sperm retrieval in infertile men.
Homology CDC25A gene is highly conserved among mammals (99% homology with Chimpanzee; 90% with dog; about 86% with rat and about 85% with mouse). In mammals, CDC25A has two orthologs, CDC25B and CDC25C. Among them, the N-terminal regulatory region show low sequence homology (20-25% identity), however, the C-terminal catalytic region is quite conserved with about 64% homology with CDC25B and about 58% homology to CDC25C.

Mutations

Note Gene mutation or amplification is not commonly reported for CDC25A. A naturally occurring point mutation (C to A) of mouse Cdc25A gene has been reported where Histidine 128 (CAC) has been converted to Glutamine (CAA). This change caused an increase in CDC25A phosphatase activity and thereby affected erythropoiesis in mice only under certain genetic background.

Implicated in

Note CDC25A is overexpressed in a variety of human cancers including breast, hepatocellular, ovarian, colorectal, esophageal, head and neck cancer and also in non-Hodgkin lymphoma.
  
Entity Breast cancer
Note - In about 47% of early (T1) stage breast cancer patients CDC25A is reported to be overexpressed.
- Although the mechanism of CDC25A upregulation in human patients is not yet clear, however, in some breast cancer cell lines it was reported that CDC25A overexpression is mainly due to increased protein stability as oppose to gene amplification or transcriptional upregulation.
- In mice, overexpression of CDC25A alone in mammary gland using mouse mammary tumor virus (MMTV) promoter, is not sufficient to induce mammary tumorigenesis. However, such mammary specific overexpression of CDC25A does cooperate with HER2/neu-ras signaling to form more aggressive tumors with enhanced genomic instability.
- In contrast, hemizygous loss of Cdc25A in mice protected them significantly from MMTV-neu/ras-induced mammary tumorigenesis, possibly by restricting precancerous cell proliferation and also by enhancing G2-checkpoint response. Thus the protein level of CDC25A is crucial for the initiation and/or progression of breast tumorigenesis in mice.
Prognosis Overexpression of CDC25A is correlated with more aggressive breast cancer with poor prognosis.
Cytogenetics CDC25A overexpression in MMTV-CDC25A; MMTV-neu double transgenic mice caused faster tumor growth as compared to MMTV-neu single transgenic mice. Importantly, such CDC25A overexpressing tumor cells displayed miscoordination of S phase and mitosis, and had severe genomic instability as evidenced by aneuploidy and deletion of fragile chromosomal regions (e.g., telomeric region of chromosome 4, which is homologous to human chromosome 1p31-36, a hotspot for several human cancers including breast cancer).
  
Entity Hepatocellular carcinoma
Note Different CDC25 inhibitor (such as vitamin K analog Cpd 5; phenyl maleimide compound PM-20; 2-Methoxyestadiol, a physiological metabolite of estrogen) are capable of inhibiting the hepatocellular carcinoma growth both in vitro and in vivo.
Prognosis CDC25A overexpression is associated with poor prognosis of hepatocellular carcinoma.
  

External links

Nomenclature
HGNC (Hugo)CDC25A   1725
Entrez_Gene (NCBI)CDC25A  993  cell division cycle 25 homolog A (S. pombe)
Cards
AtlasCDC25AID40004ch3p21
GeneCards (Weizmann)CDC25A
Ensembl (Hinxton)ENSG00000164045 [Gene_View]  chr3:48198668-48229801 [Contig_View]  CDC25A [Vega]
AceView (NCBI)CDC25A
Genatlas (Paris)CDC25A
euGene (Indiana)993
SOURCE (Stanford)NM_001789 NM_201567
Genomic and cartography
GoldenPath (UCSC)CDC25A  -  3p21   chr3:48198668-48229801 -  3p21   [Description]    (hg19-Feb_2009)
EnsemblCDC25A - 3p21 [CytoView]
Mapping of homologs : NCBICDC25A [Mapview]
OMIM116947   
Gene and transcription
Genbank (Entrez)AF277722 AI917350 AK290554 AY137580 BC007401
RefSeq transcript (SRS)NM_001789 NM_201567
RefSeq transcript (Entrez)NM_001789 NM_201567
RefSeq genomic (SRS)AC_000135 NC_000003 NT_022517 NW_001838877
RefSeq genomic (Entrez)AC_000135 NC_000003 NT_022517 NW_001838877
Consensus coding sequences : CCDS (NCBI)CDC25A
Cluster EST : UnigeneHs.437705 [ SRS ] Hs.437705 [ NCBI ]
Alternative Splicing : Fast-db (Paris)5783
Alternative Splicing GalleryENSG00000164045
Gene ExpressionCDC25A [ NCBI-GEO ]   CDC25A [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP30304 (SRS) P30304 (Uniprot)
With graphics : InterProP30304
Splice isoforms : SwissVarP30304(Swissvar)
Domaine pattern : Prosite (SRS)RHODANESE_3 (PS50206)   
Domaine pattern : Prosite (Expaxy)RHODANESE_3 (PS50206)   
Domains : Interpro (SRS)MPI_Phosphatase    Rhodanese-like   
Domains : Interpro (EBI)MPI_Phosphatase    Rhodanese-like   
Related proteins : CluSTrP30304
Domain families : Pfam (SRS)M-inducer_phosp (PF06617)    Rhodanese (PF00581)   
Domain families : Pfam (Sanger)M-inducer_phosp (PF06617)    Rhodanese (PF00581)   
Domain families : Pfam (NCBI)pfam06617    pfam00581   
Domain families : Smart (EMBL)RHOD (SM00450)  
Blocks (Seattle)P30304
PDB (SRS)1C25   
PDB (PDBSum)1C25   
PDB (IMB)1C25   
PDB (RSDB)1C25   
Human Protein AtlasENSG00000164045
HPRD00305
IPIIPI00220981   IPI00216430   IPI00925909   IPI00924949   
Protein Interaction databases
DIP (DOE-UCLA)P30304
IntAct (EBI)P30304
FunCoupENSG00000164045
REACTOMECDC25A
BioGRIDCDC25A
InParanoidP30304
Interologous Interaction database P30304
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CDC25A
SNP (GeneSNP Utah)CDC25A
SNP : HGBaseCDC25A
Genetic variants : HAPMAPCDC25A
Somatic Mutations in Cancer : COSMICCDC25A 
CONAN: Copy Number AnalysisCDC25A 
Mutations and Diseases : HGMDCDC25A
OMIM116947   
GENETests116947   
Disease Genetic AssociationCDC25A
Huge Navigator CDC25A [HugePedia]  CDC25A [HugeCancerGEM]
Genomic VariantsCDC25A
snp3D : Map Gene to Disease993
General knowledge
Homologs : HomoloGeneCDC25A
Homology/Alignments : Family Browser (UCSC)CDC25A
Phylogenetic Trees/Animal Genes : TreeFamCDC25A
Catalytic activity : Enzyme3.1.3.48 [ Enzyme-Expasy ]   3.1.3.48 [ Enzyme-SRS ]   3.1.3.48 [ IntEnz-EBI ]   3.1.3.48 [ BRENDA ]   3.1.3.48 [ KEGG ]   
Chemical/Protein Interactions : CTD993
Chemical/Pharm GKB GenePA26259
Clinical trialCDC25A
Cancer Resource (Charite)ENSG00000164045
Ontology : AmiGOcell cycle checkpoint  regulation of cyclin-dependent protein kinase activity  G1/S transition of mitotic cell cycle  S phase of mitotic cell cycle  G2/M transition of mitotic cell cycle  mitotic cell cycle  protein tyrosine phosphatase activity  protein binding  intracellular  nucleus  nucleoplasm  cytoplasm  cytosol  DNA replication  mitosis  cell proliferation  response to radiation  hydrolase activity  protein kinase binding  cellular response to UV  cell division  
Ontology : EGO-EBIcell cycle checkpoint  regulation of cyclin-dependent protein kinase activity  G1/S transition of mitotic cell cycle  S phase of mitotic cell cycle  G2/M transition of mitotic cell cycle  mitotic cell cycle  protein tyrosine phosphatase activity  protein binding  intracellular  nucleus  nucleoplasm  cytoplasm  cytosol  DNA replication  mitosis  cell proliferation  response to radiation  hydrolase activity  protein kinase binding  cellular response to UV  cell division  
Pathways : BIOCARTARB Tumor Suppressor/Checkpoint Signaling in response to DNA damage [Genes]    Cell Cycle: G2/M Checkpoint [Genes]    Cyclins and Cell Cycle Regulation [Genes]    cdc25 and chk1 Regulatory Pathway in response to DNA damage [Genes]    Sonic Hedgehog (SHH) Receptor Ptc1 Regulates cell cycle [Genes]    Activation of Src by Protein-tyrosine phosphatase alpha [Genes]    Cell Cycle: G1/S Check Point [Genes]   
Pathways : KEGGCell cycle
Other databases
Probes
Probes : ImagenesCDC25A Related clones (RZPD - Berlin)
Litterature
PubMed119 Pubmed reference(s) in Entrez
PubGeneCDC25A
iHOPCDC25A

Bibliography

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A naturally occurring point substitution in Cdc25A, and not Fv2/Stk, is associated with altered cell-cycle status of early erythroid progenitor cells.
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Distinct modes of deregulation of the proto-oncogenic Cdc25A phosphatase in human breast cancer cell lines.
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Chk1 mediates S and G2 arrests through Cdc25A degradation in response to DNA-damaging agents.
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Overexpression of CDC25A phosphatase is associated with hypergrowth activity and poor prognosis of human hepatocellular carcinomas.
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PMID 12738732
 
Cdc25A localisation and shuttling: characterisation of sequences mediating nuclear export and import.
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PMID 15572030
 
PM-20, a novel inhibitor of Cdc25A, induces extracellular signal-regulated kinase 1/2 phosphorylation and inhibits hepatocellular carcinoma growth in vitro and in vivo.
Kar S, Wang M, Yao W, Michejda CJ, Carr BI
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PMID 16818510
 
CDC25 phosphatases in cancer cells: key players? Good targets?
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CDC25A levels determine the balance of proliferation and checkpoint response.
Ray D, Kiyokawa H
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Deregulated CDC25A expression promotes mammary tumorigenesis with genomic instability.
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Hemizygous disruption of Cdc25A inhibits cellular transformation and mammary tumorigenesis in mice.
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PMID 17638870
 
GSK-3 beta targets Cdc25A for ubiquitin-mediated proteolysis, and GSK-3 beta inactivation correlates with Cdc25A overproduction in human cancers.
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PMID 18167338
 
2-Methoxyestradiol inhibits hepatocellular carcinoma cell growth by inhibiting Cdc25 and inducing cell cycle arrest and apoptosis.
Kar S, Wang M, Carr BI
Cancer chemotherapy and pharmacology. 2008.
PMID 18246350
 
REVIEW articlesautomatic search in PubMed
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Contributor(s)

Written02-2008Dipankar Ray, Hiroaki Kiyokawa
Dept. of Mol. Pharmacol & Biol. Chem, Northwestern University, Chicago, IL 60611, USA (DR, HK); Robert H. Lurie Compre. Cancer Center, Northwestern University, Chicago, IL 60611, USA (HK)

Citation

This paper should be referenced as such :
Ray D, Kiyokawa H . CDC25A (Cell division cycle 25A). Atlas Genet Cytogenet Oncol Haematol. February 2008 .
URL : http://AtlasGeneticsOncology.org/Genes/CDC25AID40004ch3p21.html

This paper is referenced by INIST as such :
http://documents.irevues.inist.fr/bitstream/2042/38593/1/02-2008-CDC25AID40004ch3p21.pdf   [ Bibliographic record ]

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indexed on : Sat Apr 28 15:06:10 CEST 2012

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