Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MLLT7 ( myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 7)

Identity

Other namesAFX1 (ALL1 fused gene from chromosome X, 1)
MLLT7 (myeloid/lymphoid leukemia translocated to, 7)
AFX
FOXO4
HGNC (Hugo) FOXO4
Location Xq13
Location_base_pair Starts at 70232751 and ends at 70240109 bp from pter ( according to hg18-Mar_2006)  [Mapping]

DNA/RNA

Transcription 7,5kb consisting of 3 exons. RNA App. 3.5 kb mRNA; coding sequence. Placental secondary transcript: App. 2.8kb Expression pattern: Heavily expressed in skeletal muscle, placenta and ovary

Protein

Description 504 amino acids; NH2 -- similarity region with AF6q21 and FHKR -- forkhead motif -- COOH
Expression wide
Localisation nuclear
Function Transcription factor binding to the motive TTGTTTAC. Target genes: Akt, AFX is able to induce Rb-independent, p27kip1-mediated G1-arrest. Phosphorylation of AFX by protein kinase B inhibits its transcriptional activity.
Homology daf-16 (C.elegans) and other forkhead-transcription factors (i.e. FKHR, FKHRL1, FKHRP1, FKHRL1P1) and AF6q21, involved in the t(6;11)(q21;q23). In the fusion protein AFX/MLL, AFX fuses to MLL in the same aminoacid as FHKR fuses to PAX3 in the PAX3/FKHR-fusion protein of alveolar rabdomyosarcoma.

Implicated in

Entity t(X;11)(q13q23)/acute leukaemias --> MLL - AFX
Disease ANLL, T-ALL
Prognosis very poor
Hybrid/Mutated Gene 5' MLL-3' AFX as well as the reciprocal 5' AFX-3' MLL on DNA and mRNA level
Abnormal Protein comprises about 1400 amino acids from N-term MLL and 354 amino acids from AFX C-term; the reciprocal may be expressed
  

Breakpoints

 

External links

Nomenclature
HGNC (Hugo)FOXO4   7139
Entrez_Gene (NCBI)FOXO4  4303  forkhead box O4
Cards
AtlasAFX1ID57
GeneCards (Weizmann)FOXO4
Ensembl (Hinxton)ENSG00000184481 [Gene_View]  FOXO4 [Vega]
AceView (NCBI)FOXO4
Genatlas (Paris)FOXO4
euGene (Indiana)4303
SOURCE (Stanford)NM_005938
Genomic and cartography
GoldenPath (UCSC)FOXO4  -  Xq13   chrX:70232751-70240109 +  Xq13.1   [Description]    (hg18-Mar_2006)
EnsemblFOXO4 - Xq13.1 [CytoView]
Mapping of homologs : NCBIFOXO4 [Mapview]
OMIM300033   
Gene and transcription
Gene : Genbank (Entrez)AF384029 BC026735 BC106761 BP349083 CR595958
Reference sequence (RefSeq transcript) :SRSNM_005938
Reference transcript : EntrezNM_005938
RefSeq genomic : SRSAC_000066 AC_000155 NC_000023 NT_011669 NW_001842373 NW_927711
RefSeq genomic : EntrezAC_000066 AC_000155 NC_000023 NT_011669 NW_001842373 NW_927711
Consensus coding sequences : CCDS NCBIFOXO4
Cluster EST : UnigeneHs.584654 [ SRS ] Hs.584654 [ NCBI ]
Alternative Splicing : Fast-db (Paris)10205
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP98177 (SRS) P98177 (Expasy) P98177 (Uniprot)
With graphics : InterProP98177
Splice isoforms : VarSplice FASTAP98177(VarSplice FASTA)
Domaine pattern : Prosite (SRS)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domain pattern : Prosite (Expaxy)FORK_HEAD_1 (PS00657)    FORK_HEAD_2 (PS00658)    FORK_HEAD_3 (PS50039)   
Domains : Interpro (SRS)TF_Fork_head    Wing_hlx_DNA_bd   
Domains : Interpro (EBI)TF_Fork_head    Wing_hlx_DNA_bd   
Related proteins : CluSTrP98177
Domain families : Pfam SRSFork_head (PF00250)   
Domain families : Pfam SangerFork_head (PF00250)   
Domain families : Pfam NCBIpfam00250   
Domain families : Smart EMBLFH (SM00339)
Domain structure : Prodom (Prabi Lyon)TF_Fork_head (PD000425)   
Blocks (Seattle)P98177
Crystal structure of protein : PDB SRS1E17    3BPY   
Crystal structure of protein : PDBSum1E17    3BPY   
Crystal structure of protein : IMB1E17    3BPY   
Crystal structure of protein : PDB RSDB1E17    3BPY   
HPRD02070
Protein Interaction databases
DIP (DOE-UCLA)P98177
IntAct (EBI)P98177
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIFOXO4
SNP : GeneSNP UtahFOXO4
SNP : HGBaseFOXO4
Genetic variants : HAPMAPFOXO4
Somatic Mutations in Cancer : COSMICFOXO4 
Translocation Breakpoints in Cancer : TICdbFOXO4 
Mutations and Diseases : HGMDFOXO4
Hereditary diseases : OMIM300033   
Hereditary diseases : GENETests300033   
Diseases : Genetic AssociationFOXO4
General knowledge
Homologs : HomoloGeneFOXO4
Homology/Alignments : Family Browser UCSCFOXO4
Phylogenetic Trees/Animal Genes : TreeFamFOXO4
Chemical/Protein Interactions : CTD4303
Keywords Ontology : AmiGOG1 phase of mitotic cell cycle  transcription factor activity  nucleus  cytoplasm  cytosol  regulation of transcription, DNA-dependent  transcription from RNA polymerase II promoter  cell cycle  cell cycle arrest  mitotic cell cycle G2/M transition DNA damage checkpoint  multicellular organismal development  skeletal muscle development  transcription factor binding  negative regulation of cell proliferation  insulin receptor signaling pathway  negative regulation of angiogenesis  transcription activator activity  enzyme binding  cell differentiation  sequence-specific DNA binding  positive regulation of transcription  negative regulation of smooth muscle cell differentiation  
Keywords Ontology : EGO-EBIG1 phase of mitotic cell cycle  transcription factor activity  nucleus  cytoplasm  cytosol  regulation of transcription, DNA-dependent  transcription from RNA polymerase II promoter  cell cycle  cell cycle arrest  mitotic cell cycle G2/M transition DNA damage checkpoint  multicellular organismal development  skeletal muscle development  transcription factor binding  negative regulation of cell proliferation  insulin receptor signaling pathway  negative regulation of angiogenesis  transcription activator activity  enzyme binding  cell differentiation  sequence-specific DNA binding  positive regulation of transcription  negative regulation of smooth muscle cell differentiation  
Pathways : BIOCARTAAKT Signaling Pathway [Genes]    Ras Signaling Pathway [Genes]   
Pathways : KEGG
Other databases
Probes
ProbeCancer Cytogenetics (Bari)
Probes : ImagenesFOXO4 Related clones (RZPD - Berlin)
Literature
PubMed39 Pubmed reference(s) in Entrez
PubGeneFOXO4

Bibliography

Cloning and characterization of the t(X;11) breakpoint from a leukemic cell line identify a new member of the forkhead gene family.
Parry P, Wei Y, Evans G
Genes, chromosomes & cancer. 1994 ; 11 (2) : 79-84.
PMID 7529552
 
Cloning and characterization of AFX, the gene that fuses to MLL in acute leukemias with a t(X;11)(q13;q23).
Borkhardt A, Repp R, Haas OA, Leis T, Harbott J, Kreuder J, Hammermann J, Henn T, Lampert F
Oncogene. 1997 ; 14 (2) : 195-202.
PMID 9010221
 
AFX1 and p54nrb: fine mapping, genomic structure, and exclusion as candidate genes of X-linked dystonia parkinsonism.
Peters U, Haberhausen G, Kostrzewa M, Nolte D, Mˆºller U
Human genetics. 1997 ; 100 (5-6) : 569-572.
PMID 9341872
 
Direct control of the Forkhead transcription factor AFX by protein kinase B.
Kops GJ, de Ruiter ND, De Vries-Smits AM, Powell DR, Bos JL, Burgering BM
Nature. 1999 ; 398 (6728) : 630-634.
PMID 10217147
 
AFX-like Forkhead transcription factors mediate cell-cycle regulation by Ras and PKB through p27kip1.
Medema RH, Kops GJ, Bos JL, Burgering BM
Nature. 2000 ; 404 (6779) : 782-787.
PMID 10783894
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written04-1998Olivier Bernard
Updated08-2001Stig E. Bojesen

Citation

This paper should be referenced as such :
Bernard O . MLLT7 ( myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 7). Atlas Genet Cytogenet Oncol Haematol. April 1998 .
URL : http://AtlasGeneticsOncology.org/Genes/AFX1ID57.html
Bojesen SE . MLLT7 ( myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 7). Atlas Genet Cytogenet Oncol Haematol. August 2001 .
URL : http://AtlasGeneticsOncology.org/Genes/AFX1ID57.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jun 27 16:38:28 CEST 2009

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.