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CREBBP (CREB binding protein)

Identity

Other namesCBP (cAMP Response Element-Binding Protein (CREB)-binding protein)
RSTS (Rubinstein-Taybi syndrome)
KAT3A
HGNC (Hugo) CREBBP
Location 16p13.3
Location_base_pair Starts at 3715057 and ends at 3870122 bp from pter ( according to hg18-Mar_2006)  [Mapping]
Local_order centromere-ADCY9-CREBBP-TRAP1-telomere.
 
  A: CBP (16p22) - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics. Laboratories willing to validate the probes are welcome : contact rocchi@biologia.uniba.it.
B: Map showing the position of BAC clone RP11-1072J2 (UCSC Genome Browser assembly Mar 2006), centered on CREBBP gene (top) and two images of partial metaphases from normal controls showing, after FISH, CREBBP-specific signals at 16p13.3 (bottom).

DNA/RNA

Description The gene spans about 155 kb; transcription from centromere to telomere, number of exons: 31.
Transcription 10 kb mRNA, with a 7.3 kb coding sequence, start codon in exon 1, stop codon in exon 31.

Protein

Description 2442 amino acids; 265351 Da; predict PI=8.83; Known domains are: KIX= CREB binding , Bromo= Bromodomain, Zn=zinc-finger (corresponding to cysteine-histidine rich regions), HAT= acetyl transferasic, Q= poly Glutaminic stretch. From the carboxy to the N-terminus: Q-Zn-HAT-Zn-Bromo-KIX-Zn. Reported isoform b (2402 aa) lacking aa406-444 (exon 5). Methylation of the KIX domain by CARM1 blocks association with CREB. Phosphorylated upon DNA damage, probably by ATM or ATR.
Expression Wide expression; expression in the whole embryo as well brain; cDNA sources: mammary gland; lung; placenta; testis; lymph node; thymus; mouth; ear; kidney; embryonic tissue; larynx; pancreas; intestine; blood; heart; amniotic fluid; trachea; liver; thyroid; skin; connective tissue; uterus; eye; prostate; stomach; ovary; salivary gland; muscle; adrenal gland; bone marrow; adipose tissue; spleen; nerve; bone; bladder.
Localisation Nucleus.
Function Binds specifically to phosphorylated CREB and enhances its transcriptional activity toward cAMP-responsive genes;
Acts as transcription co-activator by: i) enabling the interaction between different TF and RNAPolII complexes, ii) serving as molecular scaffold that brings enzymes to the promoter, iii) remodelling the chromatin favouring the open status, by histone and non-histone proteins acetylation.
Essential role in embryogenesis, cell differentiation, apoptosis, and proliferation;
Involved in the regulation of cell cycle during G1/S transition.
Homology EP300

Implicated in

Entity t(8;16)(p11;p13)/M4 ANLL --> MOZ/CBP
Disease Acute non lymphocytic leukemia (ANLL) and treatment related ANLL (t-ANLL).
Prognosis Poor: remission is obtained in half cases; survival is often less than 1yr.
Cytogenetics +8 as an additional anomalies in half cases.
Hybrid/Mutated Gene 5' MOZ - 3' CBP.
Abnormal Protein N-term finger motifs and acetyl transferase from MOZ fused to most of CBP, with a breakpoint in 5' of the CREB binding domain of CBP.
  
Entity t(10;16)(q22;p13)/M4 ANLL --> MYST4/CBP
Disease Acute myeloid leukaemia (AML) M4/M5a and therapy-related myelodysplastic syndromes (MDS). Only 4 cases described.
Prognosis Poor, bad response to chemotherapy.
Hybrid/Mutated Gene 5' MYST4 - 3' CBP.
Abnormal Protein In-frame fusion between MYST4 exon 17 and CREBBP exon 3. Variants fusing MYST4 exon 16 and CREBBP exon 5; MYST4 exon 17 and CREBBP exon 7 have been also described. CREBBP-MYST4 transcripts have been detected.
  
Entity t(11;16)(q23;p13)/t-ANLL --> MLL/CBP
Disease Therapy related ANLL (t-ANLL); should be very close to the t(11;22)(q23;q13).
Prognosis Likely to be poor.
Hybrid/Mutated Gene 5' MLL - 3'CBP.
Abnormal Protein N-term AT hook and DNA methyltransferase from MLL fused to most of CBP; variable brakpoint in CBP: either 5' to the CREB binding domain (like in the t(8;16)), or just upstream the bromodomain.
  
Entity Rubinstein-Taybi syndrome
Note Due to CBP haploinsufficiency.
Disease Rare autosomal dominant congenital disorder characterized by postnatal growth retardation and psychomotor developmental delay, skeletal anomalies (broad and duplicated distal phalanges of thumbs and halluces are a landmark sign) and specific facial dysmorphisms. The latter include down-slanted palpebral fissures, broad nasal bridge, beaked nose and micrognathia. In addition, patients with RSTS have an increased, although not well documented, risk of tumor formation.
 
Top: Ideogram of chromosome 16 and chromosomal localisation of the CREBBP gene. Middle: the genomic region including CREBBP (red) and flanking genes is zoomed. Deletions spanning CREBBP and adjacent sequences (accounting for about 10% of CREBBP mutations) are indicated by black lines. Mosaic deletions (only 3 so far detected) are asterisked; dotted lines target low-resolution mapped breakpoints. So far 22 deletions have been reported and the differently sized ones (21) are here diagrammed.
Bottom: structure of CREBBP gene and protein. Different colours are used to link gene exons (pictured by rectangles) and corresponding protein domains. Different reported point mutations (n.108 in Leiden Open Variation Database) are shown: filled circles (nonsense) and dotted circles (frameshift), squares (missense) and triangles (splicing). Most mutations cluster to exons encoding the HAT domain.
Known domains from the carbossi-terminal are: Q= poly Glutaminic stretch, Zn=zinc-finger, HAT= acetyl transferasic, Bromo= Bromodomain, KIX= CREB binding).
  

Breakpoints

 
 
  Localization of breakpoints affecting CREBBP and partner genes in leukaemia-associated balanced translocations.

External links

Nomenclature
HGNC (Hugo)CREBBP   2348
Entrez_Gene (NCBI)CREBBP  1387  CREB binding protein
Cards
AtlasCBPID42
GeneCards (Weizmann)CREBBP
Ensembl (Hinxton)ENSG00000005339 [Gene_View]  CREBBP [Vega]
AceView (NCBI)CREBBP
Genatlas (Paris)CREBBP
euGene (Indiana)1387
SOURCE (Stanford)NM_001079846 NM_004380
Genomic and cartography
GoldenPath (UCSC)CREBBP  -  16p13.3   chr16:3715057-3870122 -  16p13.3   [Description]    (hg18-Mar_2006)
EnsemblCREBBP - 16p13.3 [CytoView]
Mapping of homologs : NCBICREBBP [Mapview]
OMIM180849   600140   
Gene and transcription
Gene : Genbank (Entrez)AB210043 AK124320 AK304771 BC036486 U47741
Reference sequence (RefSeq transcript) :SRSNM_001079846 NM_004380
Reference transcript : EntrezNM_001079846 NM_004380
RefSeq genomic : SRSAC_000059 AC_000148 NC_000016 NT_037887 NW_001838341 NW_926018
RefSeq genomic : EntrezAC_000059 AC_000148 NC_000016 NT_037887 NW_001838341 NW_926018
Consensus coding sequences : CCDS NCBICREBBP
Cluster EST : UnigeneHs.459759 [ SRS ] Hs.459759 [ NCBI ]
Alternative Splicing : Fast-db (Paris)2903
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ92793 (SRS) Q92793 (Expasy) Q92793 (Uniprot)
With graphics : InterProQ92793
Splice isoforms : VarSplice FASTAQ92793(VarSplice FASTA)
Domaine pattern : Prosite (SRS)BROMODOMAIN_1 (PS00633)    BROMODOMAIN_2 (PS50014)    KIX (PS50952)    ZF_TAZ (PS50134)    ZF_ZZ_1 (PS01357)    ZF_ZZ_2 (PS50135)   
Domain pattern : Prosite (Expaxy)BROMODOMAIN_1 (PS00633)    BROMODOMAIN_2 (PS50014)    KIX (PS50952)    ZF_TAZ (PS50134)    ZF_ZZ_1 (PS01357)    ZF_ZZ_2 (PS50135)   
Domains : Interpro (SRS)Bromodomain    DUF902_CREBbp    KIX    Nuc_rcpt_coact_CREBbp    Trans_coact    Znf_TAZ    Znf_ZZ   
Domains : Interpro (EBI)Bromodomain    DUF902_CREBbp    KIX    Nuc_rcpt_coact_CREBbp    Trans_coact    Znf_TAZ    Znf_ZZ   
Related proteins : CluSTrQ92793
Domain families : Pfam SRSBromodomain (PF00439)    Creb_binding (PF09030)    DUF902 (PF06001)    DUF906 (PF06010)    KIX (PF02172)    zf-TAZ (PF02135)    ZZ (PF00569)   
Domain families : Pfam SangerBromodomain (PF00439)    Creb_binding (PF09030)    DUF902 (PF06001)    DUF906 (PF06010)    KIX (PF02172)    zf-TAZ (PF02135)    ZZ (PF00569)   
Domain families : Pfam NCBIpfam00439    pfam09030    pfam06001    pfam06010    pfam02172    pfam02135    pfam00569   
Domain families : Smart EMBLBROMO (SM00297)ZnF_TAZ (SM00551)ZnF_ZZ (SM00291)
Blocks (Seattle)Q92793
Crystal structure of protein : PDB SRS1JSP    1LIQ    1WO3    1WO4    1WO5    1WO6    1WO7    1ZOQ    2D82    2RNY    3DWY   
Crystal structure of protein : PDBSum1JSP    1LIQ    1WO3    1WO4    1WO5    1WO6    1WO7    1ZOQ    2D82    2RNY    3DWY   
Crystal structure of protein : IMB1JSP    1LIQ    1WO3    1WO4    1WO5    1WO6    1WO7    1ZOQ    2D82    2RNY    3DWY   
Crystal structure of protein : PDB RSDB1JSP    1LIQ    1WO3    1WO4    1WO5    1WO6    1WO7    1ZOQ    2D82    2RNY    3DWY   
HPRD02534
Protein Interaction databases
DIP (DOE-UCLA)Q92793
IntAct (EBI)Q92793
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBICREBBP
SNP : GeneSNP UtahCREBBP
SNP : HGBaseCREBBP
Genetic variants : HAPMAPCREBBP
Somatic Mutations in Cancer : COSMICCREBBP 
Translocation Breakpoints in Cancer : TICdbCREBBP 
Mutations and Diseases : HGMDCREBBP
Hereditary diseases : OMIM180849    600140   
Hereditary diseases : GENETests180849    600140   
Diseases : Genetic AssociationCREBBP
General knowledge
Homologs : HomoloGeneCREBBP
Homology/Alignments : Family Browser UCSCCREBBP
Phylogenetic Trees/Animal Genes : TreeFamCREBBP
Chemical/Protein Interactions : CTD1387
Keywords Ontology : AmiGOhistone acetyltransferase complex  response to hypoxia  transcription factor activity  transcription coactivator activity  transcription coactivator activity  histone acetyltransferase activity  signal transducer activity  nucleus  cytoplasm  regulation of transcription, DNA-dependent  protein complex assembly  signal transduction  zinc ion binding  acetyltransferase activity  histone acetylation  transferase activity  N-terminal peptidyl-lysine acetylation  homeostatic process  interspecies interaction between organisms  positive regulation of transcription  positive regulation of transcription  metal ion binding  MyoD binding  
Keywords Ontology : EGO-EBIhistone acetyltransferase complex  response to hypoxia  transcription factor activity  transcription coactivator activity  transcription coactivator activity  histone acetyltransferase activity  signal transducer activity  nucleus  cytoplasm  regulation of transcription, DNA-dependent  protein complex assembly  signal transduction  zinc ion binding  acetyltransferase activity  histone acetylation  transferase activity  N-terminal peptidyl-lysine acetylation  homeostatic process  interspecies interaction between organisms  positive regulation of transcription  positive regulation of transcription  metal ion binding  MyoD binding  
Pathways : BIOCARTA
Pathways : KEGGNeurodegenerative DisordersCell cycleWnt signaling pathwayNotch signaling pathwayTGF-beta signaling pathwayAdherens junctionJak-STAT signaling pathwayLong-term potentiationHuntington's disease
Other databases
Other databaseLeiden Open Variation Database
Other databaseDECIPHER DatabasE of Chromosomal Imbalance and Phenotype in Humans using Ensembl Resources
Other databaseHPRD Human Protein Reference Database
Probes
Probes : ImagenesCREBBP Related clones (RZPD - Berlin)
Literature
PubMed393 Pubmed reference(s) in Entrez
PubGeneCREBBP

Bibliography

The translocation t(8;16)(p11;p13) of acute myeloid leukaemia fuses a putative acetyltransferase to the CREB-binding protein.
Borrow J, Stanton VP Jr, Andresen JM, Becher R, Behm FG, Chaganti RS, Civin CI, Disteche C, Dube I, Frischauf AM, Horsman D, Mitelman F, Volinia S, Watmore AE, Housman DE.
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p300 and CBP as transcriptional regulators and targets of oncogenic events.
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PMID 8960368
 
Construction of a 1.2-Mb contig surrounding, and molecular analysis of, the human CREB-binding protein (CBP/CREBBP) gene on chromosome 16p13.3.
Giles RH, Petrij F, Dauwerse HG, den Hollander AI, Lushnikova T, van Ommen GJ, Goodman RH, Deaven LL, Doggett NA, Peters DJ, Breuning MH.
Genomics. 1997 May 15;42(1):96-114.
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The multifunctional role of the co-activator CBP in transcriptional regulation.
Goldman PS, Tran VK, Goodman RH.
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PMID 9238849
 
MLL is fused to CBP, a histone acetyltransferase, in therapy-related acute myeloid leukemia with a t(11;16)(q23;p13.3).
Sobulo OM, Borrow J, Tomek R, Reshmi S, Harden A, Schlegelberger B, Housman D, Doggett NA, Rowley JD, Zeleznik-Le NJ.
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The t(11;16)(q23;p13) translocation in myelodysplastic syndrome fuses the MLL gene to the CBP gene.
Taki T, Sako M, Tsuchida M, Hayashi Y.
Blood. 1997 Jun 1;89(11):3945-50.
PMID 9166831
 
p300 and CBP: partners for life and death.
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J Cell Physiol. 1999 Nov;181(2):218-30. (REVIEW)
PMID 10497301
 
Developmentally regulated expression of the transcriptional cofactors/histone acetyltransferases CBP and p300 during mouse embryogenesis.
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Int J Dev Biol. 1999 Sep;43(6):487-94.
PMID 10610021
 
Function for p300 and not CBP in the apoptotic response to DNA damage.
Yuan ZM, Huang Y, Ishiko T, Nakada S, Utsugisawa T, Shioya H, Utsugisawa Y, Shi Y, Weichselbaum R, Kufe D.
Oncogene. 1999 Oct 7;18(41):5714-7.
PMID 10523850
 
CBP/p300 histone acetyl-transferase activity is important for the G1/S transition.
Ait-Si-Ali S, Polesskaya A, Filleur S, Ferreira R, Duquet A, Robin P, Vervish A, Trouche D, Cabon F, Harel-Bellan A.
Oncogene. 2000 May 11;19(20):2430-7.
PMID 10828885
 
p300/CBP/p53 interaction and regulation of the p53 response.
Grossman SR.
Eur J Biochem. 2001 May;268(10):2773-8. (REVIEW)
PMID 11358491
 
CBP, a transcriptional coactivator and acetyltransferase.
McManus KJ, Hendzel MJ.
Biochem Cell Biol. 2001;79(3):253-66. (REVIEW)
PMID 11467739
 
CREB-binding protein and p300 in transcriptional regulation.
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J Biol Chem. 2001 Apr 27;276(17):13505-8. Epub 2001 Mar 8. (REVIEW)
PMID 11279224
 
CBP and p300: versatile coregulators with important roles in hematopoietic gene expression.
Blobel GA.
J Leukoc Biol. 2002 Apr;71(4):545-56. (REVIEW)
PMID 11927640
 
The versatile functions of the transcriptional coactivators p300 and CBP and their roles in disease.
Janknecht R.
Histol Histopathol. 2002 Apr;17(2):657-68. (REVIEW)
PMID 11962765
 
Transcriptional control of the inflammatory response: a role for the CREB-binding protein (CBP).
Matt T.
Acta Med Austriaca. 2002;29(3):77-9. (REVIEW)
PMID 12168567
 
Ca(2+)/CREB/CBP-dependent gene regulation: a shared mechanism critical in long-term synaptic plasticity and neuronal survival.
Bito H, Takemoto-Kimura S.
Cell Calcium. 2003 Oct-Nov;34(4-5):425-30. (REVIEW)
PMID 12909086
 
The multifunctional role of E1A in the transcriptional regulation of CREB/CBP-dependent target genes.
Brockmann D, Esche H.
Curr Top Microbiol Immunol. 2003;272:97-129. (REVIEW)
PMID 12747548
 
Chromatin acetylation, memory, and LTP are impaired in CBP+/- mice: a model for the cognitive deficit in Rubinstein-Taybi syndrome and its amelioration.
Alarcon JM, Malleret G, Touzani K, Vronskaya S, Ishii S, Kandel ER, Barco A.
Neuron. 2004 Jun 24;42(6):947-59.
PMID 15207239
 
CBP and p300: HATs for different occasions.
Kalkhoven E.
Biochem Pharmacol. 2004 Sep 15;68(6):1145-55. (REVIEW)
PMID 15313412
 
Targeting CREB-binding protein (CBP) loss of function as a therapeutic strategy in neurological disorders.
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Biochem Pharmacol. 2004 Sep 15;68(6):1157-64. (REVIEW)
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Rubinstein-Taybi syndrome.
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High frequency of mosaic CREBBP deletions in Rubinstein-Taybi syndrome patients and mapping of somatic and germ-line breakpoints.
Gervasini C, Castronovo P, Bentivegna A, Mottadelli F, Faravelli F, Giovannucci-Uzielli ML, Pessagno A, Lucci-Cordisco E, Pinto AM, Salviati L, Selicorni A, Tenconi R, Neri G, Larizza L.
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PMID 17855048
 
CBP/p300 are bimodal regulators of Wnt signaling.
Li J, Sutter C, Parker DS, Blauwkamp T, Fang M, Cadigan KM.
EMBO J. 2007 May 2;26(9):2284-94. Epub 2007 Apr 5.
PMID 17410209
 
Aberrant forms of histone acetyltransferases in human disease.
Van Beekum O, Kalkhoven E.
Subcell Biochem. 2007;41:233-62. (REVIEW)
PMID 17484131
 
The structural basis of protein acetylation by the p300/CBP transcriptional coactivator.
Liu X, Wang L, Zhao K, Thompson PR, Hwang Y, Marmorstein R, Cole PA.
Nature. 2008 Feb 14;451(7180):846-50.
PMID 18273021
 
t(8;16)(p11;p13) predisposes to a transient but potentially recurring neonatal leukemia.
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REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written07-2000Jean-Loup Huret
Genetics, Dept Medical Information, University of Poitiers, CHU Poitiers Hospital, F-86021 Poitiers, France
Updated03-2009Cristina Gervasini
Division of Medical Genetics, San Paolo School of Medicine, University of Milan, 20142 Milan, Italy

Citation

This paper should be referenced as such :
Huret JL . CREBBP (CREB binding protein). Atlas Genet Cytogenet Oncol Haematol. July 2000 .
URL : http://AtlasGeneticsOncology.org/Genes/CBPID42.html
Gervasini C . CREBBP (CREB binding protein). Atlas Genet Cytogenet Oncol Haematol. March 2009 .
URL : http://AtlasGeneticsOncology.org/Genes/CBPID42.html

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indexed on : Sat Jun 27 16:37:40 CEST 2009

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