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KLF5 : Kruppel-like factor 5 (intestinal)

Identity

Other namesIKLF
BTEB2
HGNC (Hugo) KLF5
Location 13q21.3
Location_base_pair Starts at 72531143 and ends at 72549677 bp from pter ( according to hg18-Mar_2006)  [Mapping]
 
Note FISH study in PC-3 prostate cancer cell line using BAC 505F3 as a probe

DNA/RNA

 
  Black box: Exon
Description KLF5 gene encompasses 4 exons which span about 18.7 kb of DNA. BAC clone RPCI-505F3 contains the complete KLF5 genome sequence.
Transcription about 3.4 Kb mRNA, 1374 bp open reading frame

Protein

 
  TAD: transactivation domain, PY: PPPSY sequence
Description 457 amino acids; about 55 kDa protein; KLF5 protein undergoes numerous post translational modifications: phosphorylation, acetylation, and ubiquitination. The major transactivation domain is proline rich and contains a PY motif (324-328), which can bind to E3 ubiquitin ligase WWP1. Three zinc finger domains at C-terminus can bind to GC rich DNA sequence.
Expression widely expressed in intestine, prostate, breast, lung, bladder, pancreas, placenta, uterus, skin, and skeletal muscle.
Localisation nucleus
Function KLF5 is a transcription factor. Many KLF5 target genes, such as PDGFa, PPARg, NFkB, cyclinD1, KLF4, and TCR, have been identified in different cell models. KLF5 regulates cell proliferation, cell cycle, apoptosis, and differentiation. KLF5 is an important transcription factor for cardiovascular remodeling and tumor angiogenesis. KLF5 is essential for mouse embryo development. Additionally, KLF5 may play an important role in several tumor types including breast, prostate, bladder, colon, esophagus, and skin.
Homology KLF5 gene is highly-conserved among species (from human to Drosophila). KLF5 belongs to the SP1/KLF transcription factor family

Mutations

Somatic The KLF5 gene is rarely mutated in human prostate cancer. One point mutation (A --> G), which change Met294 to Val, has been found in the breast cancer cell line MDA-MB-231.

Implicated in

Entity Breast cancer
Disease The KLF5 gene is deleted in about 43% breast cancer cell lines. Consistently, KLF5 mRNA is down-regulated in these cell lines. In 9 breast cancer cell lines without KLF5 mRNA loss, KLF5 protein is excessively degraded through ubiquitin-proteasome pathway. Forced expression of KLF5 inhibits T-47D cancer cell growth in vitro. In contrast, KLF5 expression is upregulated in clinical breast tumor samples (see below)
Prognosis Recently, high level of KLF5 mRNA expression is found to be associated with shorter survival for breast cancer patients. Using tissue microarray, we performed immunohistochemical staining with the anti-KLF5 Ab. The results suggest that KLF5 protein is generally weak in normal breast epithelial cells but strongly positive in breast tumors. Therefore, KLF5 expression is probably a good prognosis marker for breast cancer.
  
Entity Prostate cancer
Disease The KLF5 gene is deleted in about 33% prostate cancer cell lines/xenografts. Consistently, KLF5 mRNA is down-regulated in these samples compared to three immortalized prostate epithelial cell lines. In PC-3 prostate cancer cell line in which KLF5 mRNA is at normal high level, KLF5 protein is excessively degraded by over-expression of WWP1. KLF5 protein is highly expressed in normal prostate epithelial cells (Figure 5). Forced expression of KLF5 inhibits DU145 and 22Rv1 prostate cancer cell growth in vitro. In contrast, KLF5 knock-down decreases RWPE1 immortalized prostate epithelial cell growth in vitro. These results suggest that KLF5 may play a context dependent role in prostate cancer.
 
  
Entity Bladder cancer
Disease KLF5 mRNA is down-regulated in several bladder cancer cell lines. In TSu-Pr1 cell line, KLF5 over-expression promotes tumorigenesis in SCID mice. Consistently, KLF5 promotes cell cycle progression from G1 to S phase. Interestingly, KLF5 appears to promote tumor angiogenesis. Microarray analysis identified a number of angiogenic factors that are potentially regulated by KLF5, including HBP17, TGFa, and PDGFa. These findings suggest that the KLF5 transcription factor may play an oncogenic role in bladder cancer.
 
  
Entity Intestinal and colon cancer
Disease Down-regulation of KLF5 may be an early event in intestinal tumorigenesis. Expression of KLF5 in non-transformed intestinal epithelial cells enhances cell growth; however, KLF5 inhibits cell growth in colon cancer cell lines. Another group found that all-trans retinoic acid inhibits intestinal epithelial cell growth in vitro through inhibiting KLF5 expression. At the same time, lipopolysaccharide (LPS) induces proinflammatory response in intestinal epithelial cells through inducing KLF5 expression. These findings suggest that KLF5 may play an important but yet to be identified role in intestinal and colon cancer.
  
Entity Esophagus cancer
Disease KLF5 is expressed in proliferating cells of the gastrointestinal tract, including the esophagus. Expression of KLF5 in a poorly differentiated esophageal squamous cancer cell line TE2 inhibits proliferation and invasion, decreases viability after treatment with hydrogen peroxide and UV irradiation, and increases anoikis. KLF5 upregulates the cdk inhibitor p21(waf1/cip1) and pro-apoptotic protein BAX following UV irradiation.
  
Entity Skin cancer
Disease KLF5 is expressed predominantly in the basal layers of the developing epidermis, in the basal layers of cells of the inner root sheath, and in matrix cells of adult human hair follicles. In a transgenic mouse model, KLF5 over-expression in the basal layers of the epidermis causes abnormal epidermal development and differentiation. KLF5 over-expression may decrease the proliferation of stem cell populations of bulge keratinocytes.
  
Entity Cardiovascular remodeling
Disease KLF5 hemizygous knock-out mice reduce cardiac hypertrophy and interstitial fibrosis upon infusion of angiotensin II. Additionally, KLF5 may play a role in antherosclerosis and restenosis through regulating vascular smooth muscle cells.
  

External links

Nomenclature
HGNC (Hugo)KLF5   6349
Entrez_Gene (NCBI)KLF5  688  Kruppel-like factor 5 (intestinal)
Cards
AtlasKLF5ID41074ch13q21
GeneCards (Weizmann)KLF5
Ensembl (Hinxton)ENSG00000102554 [Gene_View]  KLF5 [Vega]
AceView (NCBI)KLF5
Genatlas (Paris)KLF5
euGene (Indiana)688
SOURCE (Stanford)NM_001730
Gene Expression (Array Express) ENSG00000102554
Genomic and cartography
GoldenPath (UCSC)KLF5  -  13q21.3   chr13:72531143-72549677 +  13q22.1   [Description]    (hg18-Mar_2006)
EnsemblKLF5 - 13q22.1 [CytoView]
Mapping of homologs : NCBIKLF5 [Mapview]
OMIM602903   
Gene and transcription
Gene : Genbank (Entrez)AB030824 AF132818 AF287272 AK131397 AK296900
Reference sequence (RefSeq transcript) :SRSNM_001730
Reference transcript : EntrezNM_001730
RefSeq genomic : SRSAC_000056 AC_000145 NC_000013 NT_024524 NW_001838081 NW_925506
RefSeq genomic : EntrezAC_000056 AC_000145 NC_000013 NT_024524 NW_001838081 NW_925506
Consensus coding sequences : CCDS NCBIKLF5
Cluster EST : UnigeneHs.508234 [ SRS ] Hs.508234 [ NCBI ]
Alternative Splicing : Fast-db (Paris)6511
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ13887 (SRS) Q13887 (Expasy) Q13887 (Uniprot)
With graphics : InterProQ13887
Splice isoforms : VarSplice FASTAQ13887(VarSplice FASTA)
Domaine pattern : Prosite (SRS)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domain pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (SRS)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Related proteins : CluSTrQ13887
Domain families : Pfam SRSzf-C2H2 (PF00096)   
Domain families : Pfam Sangerzf-C2H2 (PF00096)   
Domain families : Pfam NCBIpfam00096   
Domain families : Smart EMBLZnF_C2H2 (SM00355)  
Blocks (Seattle)Q13887
Crystal structure of protein : PDB SRS2EBT   
Crystal structure of protein : PDBSum2EBT   
Crystal structure of protein : IMB2EBT   
Crystal structure of protein : PDB RSDB2EBT   
HPRD04212
Protein Interaction databases
DIP (DOE-UCLA)Q13887
IntAct (EBI)Q13887
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIKLF5
SNP : GeneSNP UtahKLF5
SNP : HGBaseKLF5
Genetic variants : HAPMAPKLF5
Somatic Mutations in Cancer : COSMICKLF5 
Mutations and Diseases : HGMDKLF5
Hereditary diseases : OMIM602903   
Hereditary diseases : GENETests602903   
Diseases : Genetic AssociationKLF5
General knowledge
Homologs : HomoloGeneKLF5
Homology/Alignments : Family Browser UCSCKLF5
Phylogenetic Trees/Animal Genes : TreeFamKLF5
Chemical/Protein Interactions : CTD688
Keywords Ontology : AmiGOangiogenesis  transcription factor activity  RNA polymerase II transcription factor activity  protein binding  intracellular  nucleus  regulation of transcription, DNA-dependent  transcription from RNA polymerase II promoter  zinc ion binding  positive regulation of cell proliferation  microvillus assembly  positive regulation of transcription  metal ion binding  
Keywords Ontology : EGO-EBIangiogenesis  transcription factor activity  RNA polymerase II transcription factor activity  protein binding  intracellular  nucleus  regulation of transcription, DNA-dependent  transcription from RNA polymerase II promoter  zinc ion binding  positive regulation of cell proliferation  microvillus assembly  positive regulation of transcription  metal ion binding  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesKLF5 Related clones (RZPD - Berlin)
Literature
PubMed57 Pubmed reference(s) in Entrez
PubGeneKLF5

Bibliography

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REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written10-2006Ceshi Chen, Yinfa Zhou, Jin-Tang Dong
The Center for Cell Biology and Cancer Research Albany Medical College MS355/350, Mail code 165, 47 New Scotland Ave. Albany, NY 12208, USA

Citation

This paper should be referenced as such :
Chen C, Zhou Y, Dong JT . KLF5 : Kruppel-like factor 5 (intestinal). Atlas Genet Cytogenet Oncol Haematol. October 2006 .
URL : http://AtlasGeneticsOncology.org/Genes/KLF5ID41074ch13q21.html

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indexed on : Sat Feb 6 13:41:28 CET 2010

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