Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

KLF5 : Kruppel-like factor 5 (intestinal)

Identity

Other namesIKLF
BTEB2
Hugo KLF5
Location 13q21.3
 
Note FISH study in PC-3 prostate cancer cell line using BAC 505F3 as a probe

DNA/RNA

 
  Black box: Exon
Description KLF5 gene encompasses 4 exons which span about 18.7 kb of DNA. BAC clone RPCI-505F3 contains the complete KLF5 genome sequence.
Transcription about 3.4 Kb mRNA, 1374 bp open reading frame

Protein

 
  TAD: transactivation domain, PY: PPPSY sequence
Description 457 amino acids; about 55 kDa protein; KLF5 protein undergoes numerous post translational modifications: phosphorylation, acetylation, and ubiquitination. The major transactivation domain is proline rich and contains a PY motif (324-328), which can bind to E3 ubiquitin ligase WWP1. Three zinc finger domains at C-terminus can bind to GC rich DNA sequence.
Expression widely expressed in intestine, prostate, breast, lung, bladder, pancreas, placenta, uterus, skin, and skeletal muscle.
Localisation nucleus
Function KLF5 is a transcription factor. Many KLF5 target genes, such as PDGFa, PPARg, NFkB, cyclinD1, KLF4, and TCR, have been identified in different cell models. KLF5 regulates cell proliferation, cell cycle, apoptosis, and differentiation. KLF5 is an important transcription factor for cardiovascular remodeling and tumor angiogenesis. KLF5 is essential for mouse embryo development. Additionally, KLF5 may play an important role in several tumor types including breast, prostate, bladder, colon, esophagus, and skin.
Homology KLF5 gene is highly-conserved among species (from human to Drosophila). KLF5 belongs to the SP1/KLF transcription factor family

Mutations

Somatic The KLF5 gene is rarely mutated in human prostate cancer. One point mutation (A --> G), which change Met294 to Val, has been found in the breast cancer cell line MDA-MB-231.

Implicated in

Entity Breast cancer
Disease The KLF5 gene is deleted in about 43% breast cancer cell lines. Consistently, KLF5 mRNA is down-regulated in these cell lines. In 9 breast cancer cell lines without KLF5 mRNA loss, KLF5 protein is excessively degraded through ubiquitin-proteasome pathway. Forced expression of KLF5 inhibits T-47D cancer cell growth in vitro. In contrast, KLF5 expression is upregulated in clinical breast tumor samples (see below)
Prognosis Recently, high level of KLF5 mRNA expression is found to be associated with shorter survival for breast cancer patients. Using tissue microarray, we performed immunohistochemical staining with the anti-KLF5 Ab. The results suggest that KLF5 protein is generally weak in normal breast epithelial cells but strongly positive in breast tumors. Therefore, KLF5 expression is probably a good prognosis marker for breast cancer.
  
Entity Prostate cancer
Disease The KLF5 gene is deleted in about 33% prostate cancer cell lines/xenografts. Consistently, KLF5 mRNA is down-regulated in these samples compared to three immortalized prostate epithelial cell lines. In PC-3 prostate cancer cell line in which KLF5 mRNA is at normal high level, KLF5 protein is excessively degraded by over-expression of WWP1. KLF5 protein is highly expressed in normal prostate epithelial cells (Figure 5). Forced expression of KLF5 inhibits DU145 and 22Rv1 prostate cancer cell growth in vitro. In contrast, KLF5 knock-down decreases RWPE1 immortalized prostate epithelial cell growth in vitro. These results suggest that KLF5 may play a context dependent role in prostate cancer.
 
  
Entity Bladder cancer
Disease KLF5 mRNA is down-regulated in several bladder cancer cell lines. In TSu-Pr1 cell line, KLF5 over-expression promotes tumorigenesis in SCID mice. Consistently, KLF5 promotes cell cycle progression from G1 to S phase. Interestingly, KLF5 appears to promote tumor angiogenesis. Microarray analysis identified a number of angiogenic factors that are potentially regulated by KLF5, including HBP17, TGFa, and PDGFa. These findings suggest that the KLF5 transcription factor may play an oncogenic role in bladder cancer.
 
  
Entity Intestinal and colon cancer
Disease Down-regulation of KLF5 may be an early event in intestinal tumorigenesis. Expression of KLF5 in non-transformed intestinal epithelial cells enhances cell growth; however, KLF5 inhibits cell growth in colon cancer cell lines. Another group found that all-trans retinoic acid inhibits intestinal epithelial cell growth in vitro through inhibiting KLF5 expression. At the same time, lipopolysaccharide (LPS) induces proinflammatory response in intestinal epithelial cells through inducing KLF5 expression. These findings suggest that KLF5 may play an important but yet to be identified role in intestinal and colon cancer.
  
Entity Esophagus cancer
Disease KLF5 is expressed in proliferating cells of the gastrointestinal tract, including the esophagus. Expression of KLF5 in a poorly differentiated esophageal squamous cancer cell line TE2 inhibits proliferation and invasion, decreases viability after treatment with hydrogen peroxide and UV irradiation, and increases anoikis. KLF5 upregulates the cdk inhibitor p21(waf1/cip1) and pro-apoptotic protein BAX following UV irradiation.
  
Entity Skin cancer
Disease KLF5 is expressed predominantly in the basal layers of the developing epidermis, in the basal layers of cells of the inner root sheath, and in matrix cells of adult human hair follicles. In a transgenic mouse model, KLF5 over-expression in the basal layers of the epidermis causes abnormal epidermal development and differentiation. KLF5 over-expression may decrease the proliferation of stem cell populations of bulge keratinocytes.
  
Entity Cardiovascular remodeling
Disease KLF5 hemizygous knock-out mice reduce cardiac hypertrophy and interstitial fibrosis upon infusion of angiotensin II. Additionally, KLF5 may play a role in antherosclerosis and restenosis through regulating vascular smooth muscle cells.
  

External links

Nomenclature
HugoKLF5
GDBKLF5
Entrez_GeneKLF5  688  Kruppel-like factor 5 (intestinal)
Cards
AtlasKLF5ID41074ch13q21
GeneCardsKLF5
EnsemblKLF5 [Search_View]   ENSG00000102554 [Gene_View]
GenatlasKLF5
GeneLynxKLF5
eGenomeKLF5
euGene688
Genomic and cartography
GoldenPathKLF5  -  13q21.3   chr13:72531143-72549676 +  13q22.1   [Description]    (hg18-Mar_2006)
EnsemblKLF5 - 13q22.1 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneKLF5
Gene and transcription
GenbankAB030824 [ ENTREZ ]
GenbankAF132818 [ ENTREZ ]
GenbankAF287272 [ ENTREZ ]
GenbankAK131397 [ ENTREZ ]
GenbankBC007695 [ ENTREZ ]
RefSeqNM_001730 [ SRS ]    NM_001730 [ ENTREZ ]
RefSeqAC_000056 [ SRS ]    AC_000056 [ ENTREZ ]
RefSeqNC_000013 [ SRS ]    NC_000013 [ ENTREZ ]
RefSeqNT_024524 [ SRS ]    NT_024524 [ ENTREZ ]
RefSeqNW_925506 [ SRS ]    NW_925506 [ ENTREZ ]
AceViewKLF5 AceView - NCBI
UnigeneHs.508234 [ SRS ]    Hs.508234 [ NCBI ]     HS508234 [ spliceNest ]
Fast-db6511 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ13887 [ SRS]    Q13887 [ EXPASY ]     Q13887 [ INTERPRO ]
PrositePS00028 ZINC_FINGER_C2H2_1 [ SRS ]    PS00028 ZINC_FINGER_C2H2_1 [ Expasy ]
PrositePS50157 ZINC_FINGER_C2H2_2 [ SRS ]    PS50157 ZINC_FINGER_C2H2_2 [ Expasy ]
InterproIPR007087 Znf_C2H2 [ SRS ]    IPR007087 Znf_C2H2 [ EBI ]
InterproIPR015880 Znf_C2H2-like [ SRS ]    IPR015880 Znf_C2H2-like [ EBI ]
InterproIPR013087 Znf_C2H2/integrase_DNA-bd [ SRS ]    IPR013087 Znf_C2H2/integrase_DNA-bd [ EBI ]
CluSTrQ13887
PfamPF00096 zf-C2H2 [ SRS ]    PF00096 zf-C2H2 [ Sanger ]    pfam00096 [ NCBI-CDD ]
SmartSM00355 ZnF_C2H2 [EMBL]
ProdomPD000003 Znf_C2H2[INRA-Toulouse]
ProdomQ13887 KLF5_HUMAN [ Domain structure ]   Q13887 KLF5_HUMAN  [ sequences sharing at least 1 domain ]
BlocksQ13887
HPRD04212
Protein Interaction databases
DIPQ13887
IntActQ13887
Polymorphism : SNP, mutations, diseases
OMIM602903    [ map ]   
GENECLINICS602903
SNPKLF5 [dbSNP-NCBI]  
SNPNM_001730 [SNP-NCI]  
SNPKLF5 [GeneSNPs - Utah]  KLF5] [HGBASE - SRS]
HAPMAPKLF5 [HAPMAP]  
HGMDKLF5
General knowledge
Family BrowserKLF5 [UCSC Family Browser]
SOURCENM_001730
SMDHs.508234
SAGEHs.508234
GOangiogenesis [Amigo]  angiogenesis
GOtranscription factor activity [Amigo]  transcription factor activity
GORNA polymerase II transcription factor activity [Amigo]  RNA polymerase II transcription factor activity
GOprotein binding [Amigo]  protein binding
GOintracellular [Amigo]  intracellular
GOnucleus [Amigo]  nucleus
GOtranscription [Amigo]  transcription
GOregulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GOtranscription from RNA polymerase II promoter [Amigo]  transcription from RNA polymerase II promoter
GOzinc ion binding [Amigo]  zinc ion binding
GOpositive regulation of cell proliferation [Amigo]  positive regulation of cell proliferation
GOmicrovillus biogenesis [Amigo]  microvillus biogenesis
GOpositive regulation of transcription [Amigo]  positive regulation of transcription
GOmetal ion binding [Amigo]  metal ion binding
PubGeneKLF5
TreeFamKLF5
CTD688 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeKLF5 Related clones (RZPD - Berlin)
PubMed
PubMed41 Pubmed reference(s) in LocusLink

Bibliography

-
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written10-2006Ceshi Chen, Yinfa Zhou, Jin-Tang Dong
The Center for Cell Biology and Cancer Research Albany Medical College MS355/350, Mail code 165, 47 New Scotland Ave. Albany, NY 12208, USA

Citation

This paper should be referenced as such :
Chen C, Zhou Y, Dong JT . KLF5 : Kruppel-like factor 5 (intestinal). Atlas Genet Cytogenet Oncol Haematol. October 2006 .
URL : http://AtlasGeneticsOncology.org/Genes/KLF5ID41074ch13q21.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 2 08:24:31 2008


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

j.l.huret@chu-poitiers.fr.