RBBP7 (retinoblastoma binding protein 7)

2009-07-01   Neehar Sinha , Ranjan Tamuli 

Department of Biotechnology, Indian Institute of Technology Guwahati, Guwahati-781 039, Assam, India

Identity

HGNC
LOCATION
Xp22.2
LOCUSID
ALIAS
RBAP46,RbAp46,RBBP-7,MGC138867,MGC138868
FUSION GENES

DNA/RNA

Atlas Image

Description

DNA size 27.75 kb; mRNA size 2021 bp; 12 exons.

Proteins

Atlas Image

Description

425 amino acids; 47.82 kDa protein.

Post translational modifications: Phosphorylation enhances DNA binding. Phosphorylation occurs at position 95, 99, 354, 413 (Serine) and 416 (Threonine). Acetylation brings in a negative charge, acting to neutralise the positive charge on the histones and decreases the interaction of the N termini of histones with the negatively charged phosphate groups of DNA. As a consequence, the condensed chromatin is transformed into a more relaxed structure which is associated with greater levels of gene transcription.
The acetylation sites are: at 2 (Alanine), and 119 (Lysine).

Isoform: The following isoforms have been identified:
- RBBP7.iApr07
- hPA25320.1 (469 aa)
- hPA25320.2 (425 aa)
- hPA25320.3 (410 aa)
- hPA25320.7 (420 aa)

Expression

It is widely expressed.

Localisation

Nucleus.

Function

This protein is an ubiquitously expressed nuclear protein and it belongs to a highly conserved subfamily of WD-repeat proteins. It is found among several proteins that bind directly to retinoblastoma protein, which regulates cell proliferation. The encoded protein is found in many histone deacetylase complexes, including mSin3 co-repressor complex. It is also present in protein complexes involved in chromatin assembly, which include the type B histone acetyltransferase (HAT) complex, which is required for chromatin assembly following DNA replication; the core histone deacetylase (HDAC) complex, which promotes histone deacetylation and consequent transcriptional repression; the nucleosome remodeling and histone deacetylase complex (the NuRD complex), which promotes transcriptional repression by histone deacetylation and nucleosome remodelling. This protein can interact with BRCA1 tumor-suppressor gene and may have a role in the regulation of cell proliferation and differentiation.

Homology

The percent identity below represents identity of RBBP7 over an aligned region in UniGene.
- M. musculus : 100 (percentage identity)
- C. lupus familiaris : 100
- B. taurus : 100
- R. norvegicus : 100
- G.gallus : 96.2
- D. rerio : 94.4

Mutations

Note

Two types of mutation have been detected in the RBBP7 gene. A827G is a silent mutation and the other one is a missense type of mutation that changes N276S.

Implicated in

Entity name
Breast cancer
Note
RBBP7 (also known as RbAp46) overexpression has shown to inhibit the tumorigenicity of neoplastigenic breast epithelial cells (Li et al., 2003). RBBP7 activates stress-induced apoptosis, the JNK-dependent apoptotic cell death, possibly through upregulation of GADD45 (Growth arrest- and DNA damage-inducible 45). GADD45 binds and activates MAPKKK MTK1/MEK4, the upstream regulator of JNK, triggering JNK-dependent apoptosis. Thus, overexpression of RBBP7 facilitates stress-induced apoptosis and suppresses tumorigenicity of neoplastigenic breast epithelial cells.
Entity name
Leukemia
Note
Expression level of RBBP7 in initial acute leukemia has been found to be significantly higher than in chronic myelogenous leukemia. The Wilms tumor suppressor gene (WT1) expression level was also correlated with RBBP7 expression. WT1 encodes a zinc finger transcription factor that regulates transcription of its downstream gene. RBBP7 is a downstream effector of WT1 gene, and acts in a similar manner as WT1 does. It has been seen that high expression of RBBP7 suppresses the tumorigenicity of neoplastic breast epithelial cells but its overexpression possibly may induce leukemia. This phenomenon suggests that the regulatory pathway for RbAp46 gene expression in acute leukemia may be different from that in solid tumor.
Entity name
Human embryonic kidney (HEK) 293 cell tumorigenesis
Note
High levels of RbAp46 suppress the tumorigenicity of adenovirus-transformed human embryonic kidney 293 cells. High level of RbAp46 resulted in G2/M cell population and augmented apoptosis in serum starved cells. It is possible that overexpression of RbAp46 may interfere with normal cell cycle and/or enhance apoptotic cell death which inhibits the transformation of tumor cells.

Bibliography

Pubmed IDLast YearTitleAuthors
125137762002[WT1-mediated pathway of transcriptional regulation and leukemia].Duan WM et al
114333962001Rb-associated protein 46 (RbAp46) suppresses the tumorigenicity of adenovirus-transformed human embryonic kidney 293 cells.Guan LS et al
161178852005High expression of RbAp46 gene in patients with acute leukemia or chronic myelogenous leukemia in blast crisis.Hu SY et al
127670602003Overexpression of RbAp46 facilitates stress-induced apoptosis and suppresses tumorigenicity of neoplastigenic breast epithelial cells.Li GC et al
172011722006Retinoblastoma suppressor associated protein 46 (RbAp46) attenuates the beta-catenin/TCF signaling through up-regulation of GSK-3beta expression.Li GC et al
185002652008Immunohistochemical analysis of possible chemoresistance markers identified by micro-arrays on serous ovarian carcinomas.Têtu B et al
173142742007Aberrant expression of X-linked genes RbAp46, Rsk4, and Cldn2 in breast cancer.Thakur A et al
179700622007RbAp46 inhibits estrogen-stimulated progression of neoplastigenic breast epithelial cells.Zhang TF et al
159216242005[Expressive profile of retinoblastoma-associated protein 46 and its clinical significance in acute leukemias].Zhou JC et al

Other Information

Locus ID:

NCBI: 5931
MIM: 300825
HGNC: 9890
Ensembl: ENSG00000102054

Variants:

dbSNP: 5931
ClinVar: 5931
TCGA: ENSG00000102054
COSMIC: RBBP7

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000102054ENST00000380084Q16576
ENSG00000102054ENST00000380087Q16576
ENSG00000102054ENST00000380087Q6FHQ0
ENSG00000102054ENST00000404022E9PC52
ENSG00000102054ENST00000416035Q5JP01
ENSG00000102054ENST00000425696Q5JNZ6
ENSG00000102054ENST00000444437Q5JP02
ENSG00000102054ENST00000468092C9J7L0
ENSG00000102054ENST00000493145C9JAJ9

Expression (GTEx)

0
50
100
150
200
250
300

Pathways

PathwaySourceExternal ID
Gene ExpressionREACTOMER-HSA-74160
Generic Transcription PathwayREACTOMER-HSA-212436
Transcriptional Regulation by TP53REACTOMER-HSA-3700989
RNA Polymerase I, RNA Polymerase III, and Mitochondrial TranscriptionREACTOMER-HSA-504046
RNA Polymerase I TranscriptionREACTOMER-HSA-73864
RNA Polymerase I Promoter ClearanceREACTOMER-HSA-73854
RNA Polymerase I Transcription InitiationREACTOMER-HSA-73762
Epigenetic regulation of gene expressionREACTOMER-HSA-212165
PRC2 methylates histones and DNAREACTOMER-HSA-212300
Cell CycleREACTOMER-HSA-1640170
Chromosome MaintenanceREACTOMER-HSA-73886
Nucleosome assemblyREACTOMER-HSA-774815
Deposition of new CENPA-containing nucleosomes at the centromereREACTOMER-HSA-606279
Developmental BiologyREACTOMER-HSA-1266738
Cellular responses to stressREACTOMER-HSA-2262752
Cellular SenescenceREACTOMER-HSA-2559583
Oxidative Stress Induced SenescenceREACTOMER-HSA-2559580
Chromatin organizationREACTOMER-HSA-4839726
Chromatin modifying enzymesREACTOMER-HSA-3247509
HATs acetylate histonesREACTOMER-HSA-3214847
HDACs deacetylate histonesREACTOMER-HSA-3214815
PKMTs methylate histone lysinesREACTOMER-HSA-3214841
RMTs methylate histone argininesREACTOMER-HSA-3214858
Positive epigenetic regulation of rRNA expressionREACTOMER-HSA-5250913
Activation of HOX genes during differentiationREACTOMER-HSA-5619507
Activation of anterior HOX genes in hindbrain development during early embryogenesisREACTOMER-HSA-5617472
Regulation of TP53 ActivityREACTOMER-HSA-5633007
Regulation of TP53 Activity through AcetylationREACTOMER-HSA-6804758
ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expressionREACTOMER-HSA-427389

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
185714232008Structural basis for the recognition of histone H4 by the histone-chaperone RbAp46.97
199131212009Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip.85
281439042017AMPK promotes mitochondrial biogenesis and function by phosphorylating the epigenetic factors DNMT1, RBBP7, and HAT1.37
173142742007Aberrant expression of X-linked genes RbAp46, Rsk4, and Cldn2 in breast cancer.28
196558162009Discovery of retinoblastoma-associated binding protein 46 as a novel prognostic marker for distant metastasis in nonsmall cell lung cancer by combined analysis of cancer cell secretome and pleural effusion proteome.15
272472662016The C-Terminal RGG Domain of Human Lsm4 Promotes Processing Body Formation Stimulated by Arginine Dimethylation.12
292630922018Probing the interaction between the histone methyltransferase/deacetylase subunit RBBP4/7 and the transcription factor BCL11A in epigenetic complexes.12
206280862010Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study.11
185774162008The role of retinoblastoma-associated proteins 46 and 48 in estrogen receptor alpha mediated gene expression.9
257952992015CRL4(RBBP7) is required for efficient CENP-A deposition at centromeres.9

Citation

Neehar Sinha ; Ranjan Tamuli

RBBP7 (retinoblastoma binding protein 7)

Atlas Genet Cytogenet Oncol Haematol. 2009-07-01

Online version: http://atlasgeneticsoncology.org/gene/42065/rbbp7