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TRIM 24 (tripartite motif-containing 24)

Identity

Other namesPTC6
TF1A
TIF1
RNF82
TIF1A
hTIF1
TIF1ALPHA
HGNC (Hugo) TRIM24
Location 7q34
Location_base_pair Starts at 137795619 and ends at 137920872 bp from pter ( according to hg18-Mar_2006)  [Mapping]

DNA/RNA

Description The TRIM24 gene is organized in 19 exons. There are 2 corresponding transcripts, which give rise to 2 different isoforms (alternative splicing), the first one being shorter.
transcript = 3905 bp; protein = 1016 amino acids; transcript = 4007 bp; protein = 1050 amino acids.

Protein

 
Description TRIM24 encodes a nuclear protein, transcription intermediary factor 1a displaying an RBCC motif (RING finger, B-BOX, and coiled-coil domains, also called tripartite motif, TRIM) in its N-terminus and PHD and bromo domains at the C-terminus. The following is a scheme (not drawn to scale) of the protein and its domains.
Expression ubiquitously and early in development, but also in many adult tissues
Localisation The protein localizes to the nucleus (nuclear bodies).
Function Transcriptional regulator of nuclear receptors, including retinoic acid, thyroid, vitamin D3, and estrogen receptors; participates in multiprotein complexes; interacts with numerous proteins involved in chromatin structure; recruitment of TRIM24 to specific sites in the genome would ensure the localization of initiating RNA polII, and of chromatin remodeling complexes; may function through modulation of chromatin states (regulator of higher order chromatin structures, in order to promote silencing on euchromatic genes); TRIM24 has been demonstrated to possess an intrinsic transcriptional silencing activity which requires histone deacetylation; interacts directly with members of the heterochromatin protein 1 family. May be a key regulator of developmental and physiological processes.
Homology TRIM28/TIF1B, TRIM33/TIF1G, TRIM66/TIF1D

Implicated in

Entity t(7;8)(q34;p11) in leukemia --> TRIM24 - FGFR1
Disease acute myeloid leukemia (AML), 8p11 myeloproliferative syndrome (EMS).
Cytogenetics t(7;8)(q34;p11)
Hybrid/Mutated Gene TRIM24-FGFR1; FGFR1-TRIM24
Abnormal Protein The 2 predicted fusion proteins are organized as follows: TRIM24-FGFR1 contains the RING, BBOX and BBC domains from TRIM24 and the TK domain from FGFR1; FGFR1-TRIM24 contains the signal peptide along with the 3 IG-LIKE and transmembrane domains from FGFR1 and the PHD with the BROMO domains from TRIM24.
  
Entity t(7;10)(q34;q11) in papillary thyroid carcinoma: --> TRIM24- RET
Disease Found in one case of papillary thyroid carcinoma, in a child (a boy aged 4 yrs) exposed to radioactive fallout after the Chernobyl reactor accident (note: children exposed to Chernobyl radioactive fallout frequently developped papillary thyroid carcinoma (PTC), and a very high prevalence of RET rearrangements was found in these childhood PTC, compared to PTC of adults).
Abnormal Protein Fusion of the 5' end of TRIM24 including the RBCC (RING finger, B-BOX, and coiled-coil domains) motif to the 3' end of RET including the tyrosine kinase domain (and loosing the ligand binding and transmembrane domains of RET).
Oncogenesis The fusion protein could form dimers (via the coiled coil domain) and show constitutive tyrosine phosphorylation?
  

Breakpoints

 

External links

Nomenclature
HGNC (Hugo)TRIM24   11812
Entrez_Gene (NCBI)TRIM24  8805  tripartite motif-containing 24
Cards
AtlasTRIM24ID504ch7q34
GeneCards (Weizmann)TRIM24
Ensembl (Hinxton)ENSG00000122779 [Gene_View]  TRIM24 [Vega]
AceView (NCBI)TRIM24
Genatlas (Paris)TRIM24
euGene (Indiana)8805
SOURCE (Stanford)NM_003852 NM_015905
Genomic and cartography
GoldenPath (UCSC)TRIM24  -  7q34   chr7:137795619-137920872 +  7q32-q34   [Description]    (hg18-Mar_2006)
EnsemblTRIM24 - 7q32-q34 [CytoView]
Mapping of homologs : NCBITRIM24 [Mapview]
OMIM188550   603406   
Gene and transcription
Gene : Genbank (Entrez)AA844662 AF009353 AF119042 AK075306 AK127592
Reference sequence (RefSeq transcript) :SRSNM_003852 NM_015905
Reference transcript : EntrezNM_003852 NM_015905
RefSeq genomic : SRSAC_000050 AC_000068 AC_000139 NC_000007 NT_007933 NT_079596 NW_001839072 NW_923640
RefSeq genomic : EntrezAC_000050 AC_000068 AC_000139 NC_000007 NT_007933 NT_079596 NW_001839072 NW_923640
Consensus coding sequences : CCDS NCBITRIM24
Cluster EST : UnigeneHs.490287 [ SRS ] Hs.490287 [ NCBI ]
Alternative Splicing : Fast-db (Paris)12160
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtO15164 (SRS) O15164 (Expasy) O15164 (Uniprot)
With graphics : InterProO15164
Splice isoforms : VarSplice FASTAO15164(VarSplice FASTA)
Domaine pattern : Prosite (SRS)BROMODOMAIN_1 (PS00633)    BROMODOMAIN_2 (PS50014)    ZF_BBOX (PS50119)    ZF_PHD_1 (PS01359)    ZF_PHD_2 (PS50016)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domain pattern : Prosite (Expaxy)BROMODOMAIN_1 (PS00633)    BROMODOMAIN_2 (PS50014)    ZF_BBOX (PS50119)    ZF_PHD_1 (PS01359)    ZF_PHD_2 (PS50016)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (SRS)Bbox_C    Bromodomain    Znf_B-box    Znf_PHD    Znf_RING    Znf_RING/FYVE/PHD   
Domains : Interpro (EBI)Bbox_C    Bromodomain    Znf_B-box    Znf_PHD    Znf_RING    Znf_RING/FYVE/PHD   
Related proteins : CluSTrO15164
Domain families : Pfam SRSBromodomain (PF00439)    PHD (PF00628)    zf-B_box (PF00643)    zf-C3HC4 (PF00097)   
Domain families : Pfam SangerBromodomain (PF00439)    PHD (PF00628)    zf-B_box (PF00643)    zf-C3HC4 (PF00097)   
Domain families : Pfam NCBIpfam00439    pfam00628    pfam00643    pfam00097   
Domain families : Smart EMBLBBC (SM00502)BBOX (SM00336)BROMO (SM00297)PHD (SM00249)RING (SM00184)
Blocks (Seattle)O15164
Crystal structure of protein : PDB SRS2YYN   
Crystal structure of protein : PDBSum2YYN   
Crystal structure of protein : IMB2YYN   
Crystal structure of protein : PDB RSDB2YYN   
HPRD04556
Protein Interaction databases
DIP (DOE-UCLA)O15164
IntAct (EBI)O15164
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBITRIM24
SNP : GeneSNP UtahTRIM24
SNP : HGBaseTRIM24
Genetic variants : HAPMAPTRIM24
Somatic Mutations in Cancer : COSMICTRIM24 
Translocation Breakpoints in Cancer : TICdbTRIM24 
Mutations and Diseases : HGMDTRIM24
Hereditary diseases : OMIM188550    603406   
Hereditary diseases : GENETests188550    603406   
Diseases : Genetic AssociationTRIM24
General knowledge
Homologs : HomoloGeneTRIM24
Homology/Alignments : Family Browser UCSCTRIM24
Phylogenetic Trees/Animal Genes : TreeFamTRIM24
Chemical/Protein Interactions : CTD8805
Keywords Ontology : AmiGODNA binding  transcription coactivator activity  receptor binding  intracellular  nucleus  transcription  regulation of transcription, DNA-dependent  transcription from RNA polymerase II promoter  zinc ion binding  SUMO binding  metal ion binding  
Keywords Ontology : EGO-EBIDNA binding  transcription coactivator activity  receptor binding  intracellular  nucleus  transcription  regulation of transcription, DNA-dependent  transcription from RNA polymerase II promoter  zinc ion binding  SUMO binding  metal ion binding  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesTRIM24 Related clones (RZPD - Berlin)
Literature
PubMed25 Pubmed reference(s) in Entrez
PubGeneTRIM24

Bibliography

A possible involvement of TIF1 alpha and TIF1 beta in the epigenetic control of transcription by nuclear receptors.
Le Douarin B, Nielsen AL, Garnier JM, Ichinose H, Jeanmougin F, Losson R, Chambon P
The EMBO journal. 1996 ; 15 (23) : 6701-6715.
PMID 8978696
 
Differential interaction of nuclear receptors with the putative human transcriptional coactivator hTIF1.
Thˆ©not S, Henriquet C, Rochefort H, Cavaillˆ®s V
The Journal of biological chemistry. 1997 ; 272 (18) : 12062-12068.
PMID 9115274
 
The transcription coactivator HTIF1 and a related protein are fused to the RET receptor tyrosine kinase in childhood papillary thyroid carcinomas.
Klugbauer S, Rabes HM
Oncogene. 1999 ; 18 (30) : 4388-4393.
PMID 10439047
 
TIF1delta, a novel HP1-interacting member of the transcriptional intermediary factor 1 (TIF1) family expressed by elongating spermatids.
Khetchoumian K, Teletin M, Mark M, Lerouge T, Cerviˆ±o M, Oulad-Abdelghani M, Chambon P, Losson R
The Journal of biological chemistry. 2004 ; 279 (46) : 48329-48341.
PMID 15322135
 
8p11 myeloproliferative syndrome with a novel t(7;8) translocation leading to fusion of the FGFR1 and TIF1 genes.
Belloni E, Trubia M, Gasparini P, Micucci C, Tapinassi C, Confalonieri S, Nuciforo P, Martino B, Lo-Coco F, Pelicci PG, Di Fiore PP
Genes, chromosomes & cancer. 2005 ; 42 (3) : 320-325.
PMID 15609342
 
Role of TIF1alpha as a modulator of embryonic transcription in the mouse zygote.
Torres-Padilla ME, Zernicka-Goetz M
The Journal of cell biology. 2006 ; 174 (3) : 329-338.
PMID 16880268
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written02-2006Elena Belloni, Pier Giuseppe Pelicci, Pier Paolo Di Fiore
Updated12-2006Jean Loup Huret

Citation

This paper should be referenced as such :
Belloni E, Pelicci PG, Di Fiore PP . TRIM 24 (tripartite motif-containing 24). Atlas Genet Cytogenet Oncol Haematol. February 2006 .
URL : http://AtlasGeneticsOncology.org/Genes/TRIM24ID504ch7q34.html
Huret JL . TRIM 24 (tripartite motif-containing 24). Atlas Genet Cytogenet Oncol Haematol. December 2006 .
URL : http://AtlasGeneticsOncology.org/Genes/TRIM24ID504ch7q34.html

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