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TRIM 24 (tripartite motif-containing 24)

Identity

Other namesPTC6
TF1A
TIF1
RNF82
TIF1A
hTIF1
TIF1ALPHA
Hugo TRIM24
Location 7q34

DNA/RNA

Description The TRIM24 gene is organized in 19 exons. There are 2 corresponding transcripts, which give rise to 2 different isoforms (alternative splicing), the first one being shorter.
transcript = 3905 bp; protein = 1016 amino acids; transcript = 4007 bp; protein = 1050 amino acids.

Protein

 
Description TRIM24 encodes a nuclear protein, transcription intermediary factor 1a displaying an RBCC motif (RING finger, B-BOX, and coiled-coil domains, also called tripartite motif, TRIM) in its N-terminus and PHD and bromo domains at the C-terminus. The following is a scheme (not drawn to scale) of the protein and its domains.
Expression ubiquitously and early in development, but also in many adult tissues
Localisation The protein localizes to the nucleus (nuclear bodies).
Function Transcriptional regulator of nuclear receptors, including retinoic acid, thyroid, vitamin D3, and estrogen receptors; participates in multiprotein complexes; interacts with numerous proteins involved in chromatin structure; recruitment of TRIM24 to specific sites in the genome would ensure the localization of initiating RNA polII, and of chromatin remodeling complexes; may function through modulation of chromatin states (regulator of higher order chromatin structures, in order to promote silencing on euchromatic genes); TRIM24 has been demonstrated to possess an intrinsic transcriptional silencing activity which requires histone deacetylation; interacts directly with members of the heterochromatin protein 1 family. May be a key regulator of developmental and physiological processes.
Homology TRIM28/TIF1B, TRIM33/TIF1G, TRIM66/TIF1D

Implicated in

Entity t(7;8)(q34;p11) in leukemia --> TRIM24 - FGFR1
Disease acute myeloid leukemia (AML), 8p11 myeloproliferative syndrome (EMS).
Cytogenetics t(7;8)(q34;p11)
Hybrid/Mutated Gene TRIM24-FGFR1; FGFR1-TRIM24
Abnormal Protein The 2 predicted fusion proteins are organized as follows: TRIM24-FGFR1 contains the RING, BBOX and BBC domains from TRIM24 and the TK domain from FGFR1; FGFR1-TRIM24 contains the signal peptide along with the 3 IG-LIKE and transmembrane domains from FGFR1 and the PHD with the BROMO domains from TRIM24.
  
Entity t(7;10)(q34;q11) in papillary thyroid carcinoma: --> TRIM24- RET
Disease Found in one case of papillary thyroid carcinoma, in a child (a boy aged 4 yrs) exposed to radioactive fallout after the Chernobyl reactor accident (note: children exposed to Chernobyl radioactive fallout frequently developped papillary thyroid carcinoma (PTC), and a very high prevalence of RET rearrangements was found in these childhood PTC, compared to PTC of adults).
Abnormal Protein Fusion of the 5' end of TRIM24 including the RBCC (RING finger, B-BOX, and coiled-coil domains) motif to the 3' end of RET including the tyrosine kinase domain (and loosing the ligand binding and transmembrane domains of RET).
Oncogenesis The fusion protein could form dimers (via the coiled coil domain) and show constitutive tyrosine phosphorylation?
  

Breakpoints

 

External links

Nomenclature
HugoTRIM24
GDBTRIM24
Entrez_GeneTRIM24  8805  tripartite motif-containing 24
Cards
AtlasTRIM24ID504ch7q34
GeneCardsTRIM24
EnsemblTRIM24 [Search_View]   ENSG00000122779 [Gene_View]
GenatlasTRIM24
GeneLynxTRIM24
eGenomeTRIM24
euGene8805
Genomic and cartography
GoldenPathTRIM24  -  7q34   chr7:137795619-137920870 +  7q32-q34   [Description]    (hg18-Mar_2006)
EnsemblTRIM24 - 7q32-q34 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneTRIM24
Gene and transcription
GenbankAA844662 [ ENTREZ ]
GenbankAF009353 [ ENTREZ ]
GenbankAF119042 [ ENTREZ ]
GenbankAK075306 [ ENTREZ ]
GenbankAK127592 [ ENTREZ ]
RefSeqNM_003852 [ SRS ]    NM_003852 [ ENTREZ ]
RefSeqNM_015905 [ SRS ]    NM_015905 [ ENTREZ ]
RefSeqAC_000050 [ SRS ]    AC_000050 [ ENTREZ ]
RefSeqAC_000068 [ SRS ]    AC_000068 [ ENTREZ ]
RefSeqNC_000007 [ SRS ]    NC_000007 [ ENTREZ ]
RefSeqNT_007933 [ SRS ]    NT_007933 [ ENTREZ ]
RefSeqNT_079596 [ SRS ]    NT_079596 [ ENTREZ ]
RefSeqNW_923640 [ SRS ]    NW_923640 [ ENTREZ ]
AceViewTRIM24 AceView - NCBI
UnigeneHs.490287 [ SRS ]    Hs.490287 [ NCBI ]     HS490287 [ spliceNest ]
Fast-db12160 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtO15164 [ SRS]    O15164 [ EXPASY ]     O15164 [ INTERPRO ]
PrositePS00633 BROMODOMAIN_1 [ SRS ]    PS00633 BROMODOMAIN_1 [ Expasy ]
PrositePS50014 BROMODOMAIN_2 [ SRS ]    PS50014 BROMODOMAIN_2 [ Expasy ]
PrositePS50119 ZF_BBOX [ SRS ]    PS50119 ZF_BBOX [ Expasy ]
PrositePS01359 ZF_PHD_1 [ SRS ]    PS01359 ZF_PHD_1 [ Expasy ]
PrositePS50016 ZF_PHD_2 [ SRS ]    PS50016 ZF_PHD_2 [ Expasy ]
PrositePS00518 ZF_RING_1 [ SRS ]    PS00518 ZF_RING_1 [ Expasy ]
PrositePS50089 ZF_RING_2 [ SRS ]    PS50089 ZF_RING_2 [ Expasy ]
InterproIPR003649 Bbox_C [ SRS ]    IPR003649 Bbox_C [ EBI ]
InterproIPR001487 Bromodomain [ SRS ]    IPR001487 Bromodomain [ EBI ]
InterproIPR000315 Znf_Bbox [ SRS ]    IPR000315 Znf_Bbox [ EBI ]
InterproIPR001965 Znf_PHD [ SRS ]    IPR001965 Znf_PHD [ EBI ]
InterproIPR001841 Znf_RING [ SRS ]    IPR001841 Znf_RING [ EBI ]
InterproIPR013083 Znf_RING/FYVE/PHD [ SRS ]    IPR013083 Znf_RING/FYVE/PHD [ EBI ]
CluSTrO15164
PfamPF00439 Bromodomain [ SRS ]    PF00439 Bromodomain [ Sanger ]    pfam00439 [ NCBI-CDD ]
PfamPF00628 PHD [ SRS ]    PF00628 PHD [ Sanger ]    pfam00628 [ NCBI-CDD ]
PfamPF00643 zf-B_box [ SRS ]    PF00643 zf-B_box [ Sanger ]    pfam00643 [ NCBI-CDD ]
PfamPF00097 zf-C3HC4 [ SRS ]    PF00097 zf-C3HC4 [ Sanger ]    pfam00097 [ NCBI-CDD ]
SmartSM00502 BBC [EMBL]
SmartSM00336 BBOX [EMBL]
SmartSM00297 BROMO [EMBL]
SmartSM00249 PHD [EMBL]
SmartSM00184 RING [EMBL]
BlocksO15164
HPRD04556
Protein Interaction databases
DIPO15164
IntActO15164
Polymorphism : SNP, mutations, diseases
OMIM188550;603406    [ map ]   
GENECLINICS188550;603406
SNPTRIM24 [dbSNP-NCBI]  
SNPNM_003852 [SNP-NCI]  
SNPNM_015905 [SNP-NCI]  
SNPTRIM24 [GeneSNPs - Utah]  TRIM24] [HGBASE - SRS]
HAPMAPTRIM24 [HAPMAP]  
COSMICTRIM24 [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDTRIM24
General knowledge
Family BrowserTRIM24 [UCSC Family Browser]
SOURCENM_003852
SOURCENM_015905
SMDHs.490287
SAGEHs.490287
GODNA binding [Amigo]  DNA binding
GOspecific RNA polymerase II transcription factor activity [Amigo]  specific RNA polymerase II transcription factor activity
GOtranscription coactivator activity [Amigo]  transcription coactivator activity
GOreceptor binding [Amigo]  receptor binding
GOintracellular [Amigo]  intracellular
GOnucleus [Amigo]  nucleus
GOtranscription [Amigo]  transcription
GOregulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GOtranscription from RNA polymerase II promoter [Amigo]  transcription from RNA polymerase II promoter
GOzinc ion binding [Amigo]  zinc ion binding
GOmetal ion binding [Amigo]  metal ion binding
PubGeneTRIM24
TreeFamTRIM24
CTD8805 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeTRIM24 Related clones (RZPD - Berlin)
PubMed
PubMed25 Pubmed reference(s) in LocusLink

Bibliography

A possible involvement of TIF1 alpha and TIF1 beta in the epigenetic control of transcription by nuclear receptors.
Le Douarin B, Nielsen AL, Garnier JM, Ichinose H, Jeanmougin F, Losson R, Chambon P
The EMBO journal. 1996 ; 15 (23) : 6701-6715.
PMID 8978696
 
Differential interaction of nuclear receptors with the putative human transcriptional coactivator hTIF1.
Thˆ©not S, Henriquet C, Rochefort H, Cavaillˆ®s V
The Journal of biological chemistry. 1997 ; 272 (18) : 12062-12068.
PMID 9115274
 
The transcription coactivator HTIF1 and a related protein are fused to the RET receptor tyrosine kinase in childhood papillary thyroid carcinomas.
Klugbauer S, Rabes HM
Oncogene. 1999 ; 18 (30) : 4388-4393.
PMID 10439047
 
TIF1delta, a novel HP1-interacting member of the transcriptional intermediary factor 1 (TIF1) family expressed by elongating spermatids.
Khetchoumian K, Teletin M, Mark M, Lerouge T, Cerviˆ±o M, Oulad-Abdelghani M, Chambon P, Losson R
The Journal of biological chemistry. 2004 ; 279 (46) : 48329-48341.
PMID 15322135
 
8p11 myeloproliferative syndrome with a novel t(7;8) translocation leading to fusion of the FGFR1 and TIF1 genes.
Belloni E, Trubia M, Gasparini P, Micucci C, Tapinassi C, Confalonieri S, Nuciforo P, Martino B, Lo-Coco F, Pelicci PG, Di Fiore PP
Genes, chromosomes & cancer. 2005 ; 42 (3) : 320-325.
PMID 15609342
 
Role of TIF1alpha as a modulator of embryonic transcription in the mouse zygote.
Torres-Padilla ME, Zernicka-Goetz M
The Journal of cell biology. 2006 ; 174 (3) : 329-338.
PMID 16880268
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written02-2006Elena Belloni, Pier Giuseppe Pelicci, Pier Paolo Di Fiore

Citation

This paper should be referenced as such :
Belloni E, Pelicci PG, Di Fiore PP . TRIM 24 (tripartite motif-containing 24). Atlas Genet Cytogenet Oncol Haematol. February 2006 .
URL : http://AtlasGeneticsOncology.org/Genes/TRIM24ID504ch7q34.html
Huret JL . TRIM 24 (tripartite motif-containing 24). Atlas Genet Cytogenet Oncol Haematol. .
URL : http://AtlasGeneticsOncology.org/Genes/TRIM24ID504ch7q34.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 2 08:27:51 2008


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