DDX5 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 5)

2011-08-01   Zhi-Ren Liu 

Departments of Biology, Georgia State University, Atlanta, GA 30303, USA

Identity

HGNC
LOCATION
17q23.3
LOCUSID
ALIAS
G17P1,HLR1,HUMP68,p68
FUSION GENES

DNA/RNA

Note

DDX5/p68 RNA helicase is expressed in dividing cells of different vertebrates. Transcription of p68 RNA helicase gene generates a single mRNA precusor with 13 exons and 12 introns. Alternative splicing produces two mRNA transcripts, 2.3 kb and 4.4 kb (Rössler et al., 2000). The 2.3 kb mRNA transcript codes full length p68, while no translational product from the 4.4 kb mRNA transcript is detected in cellular and tissue extracts (Rössler et al., 2000).
Atlas Image
Diagram of pre-mRNA of p68 RNA helicase. The red bars are exons and the blue thin lines are introns.

Proteins

Atlas Image
Domain structure of p68 RNA helicase. Functional sequence motifs are marked.

Description

Size of p68; 614 amino acids, 69 kDa.

Expression

Expressed in almost all tissue types. Its expression is increased in cancer cells.

Localisation

Dominately localized in the cell nucleus. It is also found in the cytoplasm in various physiological conditions. p68 is a nucleocytoplasm shuttling protein (Wang et al., 2009).

Function

Pre-mRNA splicing. The protein was demonstrated to associate with spliceosome by mass-spectroscopy and an RNA-protein crosslinking analyses (Hartmuth et al., 2002; Liu et al., 1997; Neubauer et al., 1998). p68 is functionally involved in assemble of the splicesome by mediating the U1 snRNP and the 5ss interaction (Liu, 2002). p68 RNA helicase is also shown to regulate the splice site selection in the alternative splicing of several growth related genes, such as c-H-ras and tau (Kar et al., 2011; Guil et al., 2003).

Transcriptional regulation. The protein is shown to involve in transcriptional regulation by different mechanism of actions dependent on each individual regulated gene and biological processes (Stevenson et al., 1998; Endoh et al., 1999; Yang et al., 2005; Kahlina et al., 2004; Wei and Hu, 2001; Warner et al., 2004). p68 may regulate gene transcription by direct interaction with transcription factors or activators, such as p53, ERalpha (Endoh et al., 1999; Bates et al., 2005), or by mediating chromatin remodeling, such as modulating chromatin remodeling complex (Carter et al., 2010).

Epithelial-Mesenchymal-Transition (EMT). p68 becomes phosphorylated at Y593 upon growth factor stimulation by c-Abl. The tyrosine phosphorylation of p68 mediates growth factor stimulated Epithelial-Mesenchymal-Transition (EMT) (Yang et al., 2006).

Other functions. (1) p68 RNA helicase is shown to unwind the human let-7 microRNA precursor duplex. The protein is required for let-7-directed silencing of gene expression (Salzman et al., 2007). p68 is an indispensible part of Drosha complex. Its activity is required for primary miRNA and rRNA processing (Fukuda et al., 2007). (2) It is also demonstrated that the RNA helicases p68/p72 and the noncoding RNA SRA are coregulators of MyoD and skeletal muscle differentiation (Caretti et al., 2006). (3) Phosphorylation of p68 at Thr residues mediates cell apoptosis (Yang et al., 2007).

Homology

Yeast DBP2.

Mutations

Note

Very few mutations of p68 gene were reported. A recent study shows that a S480A mutation in hepatic stellate cells is associated with hepatic fibrosis (Guo et al., 2010).

Implicated in

Entity name
Colon cancer
Note
p68 expression is significantly increased in colon cancer (Shin et al., 2007). Phosphorylation of p68 at Tyr correlation with colon cancer metastasis (Yang et al., 2006; Yang et al., 2005).
Prognosis
Phosphorylation of p68 at tyrosine can be used as a diagnosis/prognosis marker for cancer.

Bibliography

Pubmed IDLast YearTitleAuthors

Other Information

Locus ID:

NCBI: 1655
MIM: 180630
HGNC: 2746
Ensembl: ENSG00000108654

Variants:

dbSNP: 1655
ClinVar: 1655
TCGA: ENSG00000108654
COSMIC: DDX5

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000108654ENST00000225792P17844
ENSG00000108654ENST00000450599P17844
ENSG00000108654ENST00000540698X6RLV5
ENSG00000108654ENST00000577787J3KRZ1
ENSG00000108654ENST00000577922J3QRQ7
ENSG00000108654ENST00000578190J3QLG9
ENSG00000108654ENST00000578400J3QR02
ENSG00000108654ENST00000578804J3KTA4
ENSG00000108654ENST00000579091J3QS97
ENSG00000108654ENST00000579996J3QSF1
ENSG00000108654ENST00000581693J3QS79
ENSG00000108654ENST00000581697J3QRN5
ENSG00000108654ENST00000581806J3QR62
ENSG00000108654ENST00000583212A0A0G2JLI4
ENSG00000108654ENST00000583239J3KTQ4
ENSG00000108654ENST00000584279J3KRX8
ENSG00000108654ENST00000585060K7EKV0
ENSG00000108654ENST00000585111J3QKN9
ENSG00000108654ENST00000630471J3QR02

Expression (GTEx)

0
100
200
300
400
500
600
700

Pathways

PathwaySourceExternal ID
SpliceosomeKEGGko03040
SpliceosomeKEGGhsa03040
Transcriptional misregulation in cancerKEGGko05202
Transcriptional misregulation in cancerKEGGhsa05202
Proteoglycans in cancerKEGGhsa05205
Proteoglycans in cancerKEGGko05205
Gene ExpressionREACTOMER-HSA-74160
Processing of Capped Intron-Containing Pre-mRNAREACTOMER-HSA-72203
mRNA SplicingREACTOMER-HSA-72172
mRNA Splicing - Major PathwayREACTOMER-HSA-72163

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
175400402007Selection of DDX5 as a novel internal control for Q-RT-PCR from microarray data using a block bootstrap re-sampling scheme.138
209660462010Mediation of CTCF transcriptional insulation by DEAD-box RNA-binding protein p68 and steroid receptor RNA activator SRA.102
170182822006P68 RNA helicase mediates PDGF-induced epithelial mesenchymal transition by displacing Axin from beta-catenin.100
156601292005The DEAD box protein p68: a novel transcriptional coactivator of the p53 tumour suppressor.85
188295512008The RNA helicase p68 is a novel androgen receptor coactivator involved in splicing and is overexpressed in prostate cancer.78
176997602007Involvement of RNA helicases p68 and p72 in colon cancer.62
187941522008A fluorescence in situ hybridization screen for E26 transformation-specific aberrations: identification of DDX5-ETV4 fusion protein in prostate cancer.55
249104392014RNA helicases DDX5 and DDX17 dynamically orchestrate transcription, miRNA, and splicing programs in cell differentiation.53
121012382002p68 RNA helicase is an essential human splicing factor that acts at the U1 snRNA-5' splice site duplex.50
126655902003Roles of hnRNP A1, SR proteins, and p68 helicase in c-H-ras alternative splicing regulation.49

Citation

Zhi-Ren Liu

DDX5 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 5)

Atlas Genet Cytogenet Oncol Haematol. 2011-08-01

Online version: http://atlasgeneticsoncology.org/gene/40290/js/lib/css/lib/bootstrap.min.css