BLM (Bloom)

2005-05-01   Mounira Amor-Guéret 

Identity

HGNC
LOCATION
15q26.1
LOCUSID
ALIAS
BS,MGRISCE1,RECQ2,RECQL2,RECQL3
FUSION GENES

DNA/RNA

Transcription

4.4kb mRNA

Proteins

Description

1417 amino acids; ATP binding in amino acid 689-696; DEAH box in 795-798; two putative nuclear localization signals in the C-term in 1334-1349

Expression

accumulates to high levels in S phase of the cell cycle, persists in G2/M and sharply declines in G1. Hyperphoshorylated in mitosis

Localisation

nuclear (PML nuclear bodies and nucleolus)

Function

  • 3-5DNA helicase; probable role in DNA replication and double-strand break repair
  • Preferred substrates : G-quadruplex DNA, D-loops structures and X-junctions.
  • Recombinant protein promotes ATP-dependent branch migration of Hollyday junctions, effects, with topoisomerase III?, the resolution of a recombination intermediate containing a double Holliday junction with no flanking sequence exchanges, and possess a strand pairing activity.
  • Recombinant BLM possess a strand pairing activity.
  • Participates in a supercomplex of BRCA1 -associated proteins named BASC (BRCA1-Associated genome Surveillance Complex) containing ATM (defective in ataxia telangiectasia), NBS1 (defective in Nijmegen syndrome) and MRE11 (defective in ataxia-telangiectasia-like disorder), MLH1, MSH2 and MSH6, which are involved in human non-polyposis colorectal cancer, RAD50 and DNA replication factor C.
  • Participates in a complex named BRAFT (BLM, RPA, FA, Topoisomerase III) containing five of the Fanconia Anemia (FA) complementation group proteins (FANCA, FANCG, FANCC, FANCE and FANCF).
  • Interacts physically and/or functionally with p53, 53BP1, WRN, MLH1, RAD51, TRF2, ATR, the largest subunit of CAF-1, ligase IV, FEN1, Mus81, the monoubiquitinated FANCD2 isoform
  • Is Associated with telomeres and ribosomal DNA repeats.
  • Is phosphorylated in mitotic cells through the cdc2 pathway, and in response to DNA damaging agents or stalled replication forks.
  • Homology

    homologous to RecQ helicases, a subfamily of DExH box-containing helicases; in particular, similarity with the four known human members in the RecQ subfamily, human RecQL, human Wrn, the product of the Werner syndrome gene, and the human RecQL4, involved in the Rothmund-Thomson syndrome, and RecQL5 proteins

    Mutations

    Germinal

    five BLM mutations introducing amino acid substitutions and four BLM mutations introducing premature nonsense codons into the coding sequence have been described to date; one BLM mutation consisting in a 6 bp deletion accompanied by a 7 bp insertion at nucleic acid position 2281 is common in patients from Ashkenazi Jewish ancestry, leading to a truncated protein of 739 amino acids in length; two BLM mutations, 631delCAA and 1610insA were detected in japanese patients.

    Implicated in

    Entity name
    Bloom syndrome
    Disease
    Bloom syndrome is a chromosome instability syndrome/cancer prone disease (at risk of numerous, early occurring cancers of various types)
    Prognosis
    1/3 of patients are dead at mean age 24 yrs, and the mean age of the 2/3 remaining alive patients is 22 yrs
    Cytogenetics
    chromatid/chromosome breaks; triradial and quadriradial figures, highly elevated spontaneous sister chromatid exchange rate

    Bibliography

    Pubmed IDLast YearTitleAuthors

    Other Information

    Locus ID:

    NCBI: 641
    MIM: 604610
    HGNC: 1058
    Ensembl: ENSG00000197299

    Variants:

    dbSNP: 641
    ClinVar: 641
    TCGA: ENSG00000197299
    COSMIC: BLM

    RNA/Proteins

    Gene IDTranscript IDUniprot
    ENSG00000197299ENST00000355112P54132
    ENSG00000197299ENST00000559724H0YLV8
    ENSG00000197299ENST00000560509H0YNU5
    ENSG00000197299ENST00000648453A0A3B3IT82

    Expression (GTEx)

    0
    5
    10
    15
    20
    25

    Pathways

    PathwaySourceExternal ID
    Homologous recombinationKEGGko03440
    Homologous recombinationKEGGhsa03440
    Fanconi anemia pathwayKEGGko03460
    Fanconi anemia pathwayKEGGhsa03460
    BRCA1-associated genome surveillance complex (BASC)KEGGhsa_M00295
    Bloom's syndrome complexKEGGhsa_M00414
    BRCA1-associated genome surveillance complex (BASC)KEGGM00295
    Bloom's syndrome complexKEGGM00414
    Metabolism of proteinsREACTOMER-HSA-392499
    Post-translational protein modificationREACTOMER-HSA-597592
    SUMOylationREACTOMER-HSA-2990846
    SUMO E3 ligases SUMOylate target proteinsREACTOMER-HSA-3108232
    SUMOylation of DNA damage response and repair proteinsREACTOMER-HSA-3108214
    Gene ExpressionREACTOMER-HSA-74160
    Generic Transcription PathwayREACTOMER-HSA-212436
    Transcriptional Regulation by TP53REACTOMER-HSA-3700989
    Cell CycleREACTOMER-HSA-1640170
    Cell Cycle CheckpointsREACTOMER-HSA-69620
    G2/M CheckpointsREACTOMER-HSA-69481
    G2/M DNA damage checkpointREACTOMER-HSA-69473
    MeiosisREACTOMER-HSA-1500620
    Meiotic recombinationREACTOMER-HSA-912446
    DNA RepairREACTOMER-HSA-73894
    DNA Double-Strand Break RepairREACTOMER-HSA-5693532
    Homology Directed RepairREACTOMER-HSA-5693538
    HDR through Homologous Recombination (HR) or Single Strand Annealing (SSA)REACTOMER-HSA-5693567
    Processing of DNA double-strand break endsREACTOMER-HSA-5693607
    HDR through Homologous Recombination (HRR)REACTOMER-HSA-5685942
    Homologous DNA Pairing and Strand ExchangeREACTOMER-HSA-5693579
    Presynaptic phase of homologous DNA pairing and strand exchangeREACTOMER-HSA-5693616
    Resolution of D-Loop StructuresREACTOMER-HSA-5693537
    Resolution of D-loop Structures through Holliday Junction IntermediatesREACTOMER-HSA-5693568
    Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA)REACTOMER-HSA-5693554
    HDR through Single Strand Annealing (SSA)REACTOMER-HSA-5685938
    Regulation of TP53 ActivityREACTOMER-HSA-5633007
    Regulation of TP53 Activity through PhosphorylationREACTOMER-HSA-6804756

    Protein levels (Protein atlas)

    Not detected
    Low
    Medium
    High

    References

    Pubmed IDYearTitleCitations
    146852452003The Bloom's syndrome helicase suppresses crossing over during homologous recombination.495
    213251342011BLM-DNA2-RPA-MRN and EXO1-BLM-RPA-MRN constitute two DNA end resection machineries for human DNA break repair.301
    175990642007BLM is required for faithful chromosome segregation and its localization defines a class of ultrafine anaphase bridges.164
    180038602007Novel pro- and anti-recombination activities of the Bloom's syndrome helicase.152
    189713432008Human exonuclease 1 and BLM helicase interact to resect DNA and initiate DNA repair.152
    165374862006BLAP75/RMI1 promotes the BLM-dependent dissolution of homologous recombination intermediates.151
    194659212009The FANC pathway and BLM collaborate during mitosis to prevent micro-nucleation and chromosome abnormalities.140
    121813132002Telomere-binding protein TRF2 binds to and stimulates the Werner and Bloom syndrome helicases.137
    165956952006A double Holliday junction dissolvasome comprising BLM, topoisomerase IIIalpha, and BLAP75.123
    167665182006The Bloom's syndrome helicase can promote the regression of a model replication fork.112

    Citation

    Mounira Amor-Guéret

    BLM (Bloom)

    Atlas Genet Cytogenet Oncol Haematol. 2005-05-01

    Online version: http://atlasgeneticsoncology.org/gene/109/gene-explorer/

    Historical Card

    2000-09-01 BLM (Bloom) by  Mounira Amor-Guéret 

    1998-02-01 BLM (Bloom) by  Jean-Loup Huret 

    Genetics, Dept Medical Information, University of Poitiers, CHU Poitiers Hospital, F-86021 Poitiers, France