E2F1 (E2F transcription factor 1)

2008-12-01   Michael Zachariadis , Vassilios G Gorgoulis 

University of Athens, Faculty of Medicine, Department of Anatomy, Greece (MZ); Department of Histology, Embryology, Molecular Carcinogenesis Group, Greece (VGG)

Identity

HGNC
LOCATION
20q11.22
LOCUSID
ALIAS
E2F-1,RBAP1,RBBP3,RBP3
FUSION GENES

DNA/RNA

Note

Start: 31,727,147 bp from pter
End: 31,737,871 bp from pter
Size: 10,725 bases
Orientation: minus strand

Transcription

The gene is comprised of 7 exons, building one main transcript of 2506 bps.

Pseudogene

Non known pseudogenes.

Proteins

Atlas Image
Schematic representation of human E2F1, depicting conserved domains and post-translational modification sites (see description for details).

Description

Length: 437 aa, molecular weight: 46920 Da.
The protein contains a number of conserved domains, including a cyclin A binding domain (aa 67-108); a nuclear localization signal (NLS, aa 85-91); a helix-loop-helix DNA binding domain (aa 120-191); a heptad repeat (aa 201-243), which mediates homo/hetero dimerization; a marked box (245-317), which is implicated in the E2F/DP and E2F/E4 ORF 6/7 interaction, and is also essential for the apoptotic activity of E2F1; and a transactivation domain (aa 368-437) containing the pRB binding domain (aa 409-426). The E2F1 protein molecule is subject to a number of post-translational modifications, including phosphorylation by cyclin D / CDK4 / CDK6 at serine residues 332 and 337, which stabilizes E2F1 and prevents its binding to pRB regardless of its phosphorylation status; acetylation of lysine residues 117, 120, and 125 by the factor acetyltransferase (FAT) complex CBP/p/CAF, which enhances DNA binding and stabilizes E2F1 further; phosphorylation by cyclin A / CDK2 at serine residue 375, which reduces DNA binding; and phosphorylation at serine residues 31 and 364 by ATM/ATR and CHK2 kinases, respectively, in response to DNA damage, which stabilizes E2F1 and promotes its apoptotic activity.

Expression

E2F1 is expressed in all actively proliferating tissues in a cell-cycle specific manner. It is expressed mainly at late G1 and G1/S transition, and its mRNA is absent or low during the rest of the cell cycle.

Localisation

E2F1 is constitutively nuclear, due to a Nuclear Localization Signal (NLS) located around aa 90.

Function

E2F1 represents a controversial player in cell cycle control, exhibiting a dual behavior, sometimes acting as a tumor-suppressor and others as an oncogene. E2F1 exerts transcriptional control over the cell cycle, induces apoptosis via distinct pathways, and participates in DNA damage response and checkpoint.

  • Transcriptional control
    E2F1 belongs to the E2F family of transcription factors, coordinating the expression of key genes involved in cell cycle regulation and progression. It is active during the G1 to S transition, and thus its target genes, which include regulatory elements of the cell cycle, such as CDC2, CDC25A and cyclin E, and essential components of DNA replication machinery, including DHFR, and DNA polymerase alpha, are expressed in a cell cycle dependent manner (i.e. only in late G1 and early S phase of the cell cycle). E2F1 recognizes and binds to specific DNA sequences (5-TTTSSCGS-3, where S = C/G) that lie within the promoter of target genes, in the form of functional heterodimers with members of the DP family of transcription factors.

  • Apoptosis
    E2F1 can induce apoptosis via distinct P53-dependent and independent pathways.
    The P53-independent pathways involve the p53 homolog P73 and APAF1, which are both transcriptionally controlled by E2F1. Transcriptional activation of P73 by E2F1 may lead to the activation of P53-responsive target genes, while induction of APAF1 transcription leads to activation of the caspase cascade. Ultimately, both pathways lead to cell death by apoptosis. Moreover, E2F1 is implicated in the upregulation of the pro-apoptotic members of the BCL2 family, but also in the downregulation of anti-apoptotic signals, by inhibiting NF-kB activity, thereby enhancing also apoptosis.
    There are many pathways linking E2F1 to P53-dependent apoptosis. The main mechanism involves direct transcriptional activation of the p14ARF tumor suppressor gene by E2F1. ARF sequesters MDM2 away from P53, leading consequently to P53 stabilization and activation. Nevertheless, ARF overexpression may lead to E2F1 downregulation, as ARF targets the latter for proteasomal degradation through p45skp2-dependent pathways. On the other hand, E2F1 can induce P53-dependent apoptosis in the absence of ARF. For instance, E2F1 can interact directly with P53 through the cyclin A-binding domain of E2F1, enhancing its apoptotic activity in response to DNA damage. Additionally, some reports argue that E2F1 uses the ATM pathway in order to activate both P53 and CHK2. Finally, E2F1 can augment the apoptotic capacity of P53 by enhancing the transcription of pro-apoptotic P53 cofactors such as P53-ASPP1, ASPP2, JMY and TP53INP1.

  • DNA Damage Response
    In response to DNA damage, E2F1 is upregulated through phosporylation-mediated stabilization. E2F1 is phosphorylated at S31 by ATM/ATR kinases and at S364 by CHK2 kinase, which are all integral components of the DNA damage signaling pathway. These phosphorylations interfere with the ARF/SKP2- and MDM2-dependent degradation of E2F1, thus stabilizing the latter by decreasing its turnover rate. In response to IR or other agents that cause DNA double strand breaks, phosphorylation by ATM/ATR seems to prime E2F1 for acetylation at specific lysine residues. These acetylations are a prerequisite for the targeting of the P73 gene promoter by E2F1, which ultimately leads to apoptosis (see above paragraph). UV radiation does not trigger E2F1 acetylation and apoptosis. Instead, E2F1 seems to play a role in DNA repair and cell survival, either directly at the sites of DNA repair or through modulation of DNA repair genes that are under its transcriptional control.
  • Homology

    Shares lesser or greater homology with other members of the E2F family (E2F2, E2F3, E2F4, E2F5, E2F6) and with the DP family of transcription factors ( DP1, DP2).

    Mutations

    Note

    No known mutations.

    Implicated in

    Note
    In non-small cell lung carcinomas (NSCLCs) E2F1 is significantly increased due to aberrant pRB status. In these cases the elevated levels of E2F1 are positively associated with the tumour growth index whereas apoptosis is not influenced as deregulation of the P53-MDM2 regulatory loop is a common phenomenon in NSCLC. Breast, thyroid and pancreatic cancer, seem to follow this same scenario, where aberrations in the pRB pathway coupled with defective P53 status, enhance E2F1 levels promoting tumor growth. In all these cases, the higher levels of E2F1 are also correlated with poorer outcome. Nevertheless, in other cases, like colon cancer, and diffuse large B-cell lymphomas the more aggressive disease is linked to lower E2F1 expression, as E2F1 in these cases acts as an oncosuppressor, enhancing apoptosis. Likewise, in adenocarcinomas of Barrett oesophagus E2F1 expression is negatively associated with tumor progression and positively with patient survival. In the case of transitional cell bladder carcinomas (TCCs) the findings are controversial. In one series of invasive bladder tumors E2F1 seems to play a tumor suppressive role, while in another series of superficial low-grade TCCs E2F1 is positively correlated with proliferation, but not with apoptosis. This discrepancy seems to lie in the type of TCC examined and the molecular characteristics of the tissue.
    The most usual genetic alteration of the E2F1 gene is amplification, as has been reported in several leukemic (e.g. the HEL human erythroleukemia cell line) and melanoma cell lines. The gene has also been found amplified in various esophageal, colorectal, cervical and ovarian cancers, as well as in lymph node metastases of melanoma, and is often linked to chromosome 20q gains in these entities. Importantly, in esophageal squamous cell carcinomas, the 20q gains and the amplification of the E2F1 gene are linked with greater aggressiveness and poorer prognosis.

    Bibliography

    Pubmed IDLast YearTitleAuthors

    Other Information

    Locus ID:

    NCBI: 1869
    MIM: 189971
    HGNC: 3113
    Ensembl: ENSG00000101412

    Variants:

    dbSNP: 1869
    ClinVar: 1869
    TCGA: ENSG00000101412
    COSMIC: E2F1

    RNA/Proteins

    Gene IDTranscript IDUniprot
    ENSG00000101412ENST00000343380Q01094

    Expression (GTEx)

    0
    5
    10
    15
    20
    25
    30
    35
    40
    45
    50

    Pathways

    PathwaySourceExternal ID
    Cell cycleKEGGko04110
    Pancreatic cancerKEGGko05212
    GliomaKEGGko05214
    Prostate cancerKEGGko05215
    MelanomaKEGGko05218
    Bladder cancerKEGGko05219
    Chronic myeloid leukemiaKEGGko05220
    Small cell lung cancerKEGGko05222
    Non-small cell lung cancerKEGGko05223
    Cell cycleKEGGhsa04110
    Pathways in cancerKEGGhsa05200
    Pancreatic cancerKEGGhsa05212
    GliomaKEGGhsa05214
    Prostate cancerKEGGhsa05215
    MelanomaKEGGhsa05218
    Bladder cancerKEGGhsa05219
    Chronic myeloid leukemiaKEGGhsa05220
    Small cell lung cancerKEGGhsa05222
    Non-small cell lung cancerKEGGhsa05223
    HTLV-I infectionKEGGko05166
    HTLV-I infectionKEGGhsa05166
    Hepatitis BKEGGhsa05161
    MicroRNAs in cancerKEGGhsa05206
    MicroRNAs in cancerKEGGko05206
    Cell cycle - G1/S transitionKEGGhsa_M00692
    Cell cycle - G1/S transitionKEGGM00692
    Signal TransductionREACTOMER-HSA-162582
    Signaling by NOTCHREACTOMER-HSA-157118
    Pre-NOTCH Expression and ProcessingREACTOMER-HSA-1912422
    Pre-NOTCH Transcription and TranslationREACTOMER-HSA-1912408
    Gene ExpressionREACTOMER-HSA-74160
    Generic Transcription PathwayREACTOMER-HSA-212436
    Transcriptional Regulation by TP53REACTOMER-HSA-3700989
    Cell CycleREACTOMER-HSA-1640170
    Cell Cycle, MitoticREACTOMER-HSA-69278
    Mitotic G1-G1/S phasesREACTOMER-HSA-453279
    G0 and Early G1REACTOMER-HSA-1538133
    G1 PhaseREACTOMER-HSA-69236
    Cyclin D associated events in G1REACTOMER-HSA-69231
    G1/S TransitionREACTOMER-HSA-69206
    G1/S-Specific TranscriptionREACTOMER-HSA-69205
    E2F mediated regulation of DNA replicationREACTOMER-HSA-113510
    Inhibition of replication initiation of damaged DNA by RB1/E2F1REACTOMER-HSA-113501
    Regulation of DNA replicationREACTOMER-HSA-69304
    Association of licensing factors with the pre-replicative complexREACTOMER-HSA-69298
    Mitotic G2-G2/M phasesREACTOMER-HSA-453274
    G2 PhaseREACTOMER-HSA-68911
    M/G1 TransitionREACTOMER-HSA-68874
    DNA Replication Pre-InitiationREACTOMER-HSA-69002
    Assembly of the pre-replicative complexREACTOMER-HSA-68867
    CDC6 association with the ORC:origin complexREACTOMER-HSA-68689
    DNA ReplicationREACTOMER-HSA-69306
    Programmed Cell DeathREACTOMER-HSA-5357801
    ApoptosisREACTOMER-HSA-109581
    Intrinsic Pathway for ApoptosisREACTOMER-HSA-109606
    Activation of BH3-only proteinsREACTOMER-HSA-114452
    Activation of NOXA and translocation to mitochondriaREACTOMER-HSA-111448
    Activation of PUMA and translocation to mitochondriaREACTOMER-HSA-139915
    Cellular responses to stressREACTOMER-HSA-2262752
    Cellular SenescenceREACTOMER-HSA-2559583
    Oncogene Induced SenescenceREACTOMER-HSA-2559585
    Oxidative Stress Induced SenescenceREACTOMER-HSA-2559580
    TP53 Regulates Transcription of Cell Cycle GenesREACTOMER-HSA-6791312
    TP53 Regulates Transcription of Genes Involved in G1 Cell Cycle ArrestREACTOMER-HSA-6804116
    Endocrine resistanceKEGGko01522
    Endocrine resistanceKEGGhsa01522
    Breast cancerKEGGko05224
    Breast cancerKEGGhsa05224
    Mitophagy - animalKEGGko04137
    Mitophagy - animalKEGGhsa04137

    Protein levels (Protein atlas)

    Not detected
    Low
    Medium
    High

    References

    Pubmed IDYearTitleCitations
    159447092005c-Myc-regulated microRNAs modulate E2F1 expression.1081
    128096022003Rb-mediated heterochromatin formation and silencing of E2F target genes during cellular senescence.715
    183284302008E2F1-regulated microRNAs impair TGFbeta-dependent cell-cycle arrest and apoptosis in gastric cancer.348
    171352492007An E2F/miR-20a autoregulatory feedback loop.238
    153068142004Rb inactivation promotes genomic instability by uncoupling cell cycle progression from mitotic control.204
    269284632016Substantial interindividual and limited intraindividual genomic diversity among tumors from men with metastatic prostate cancer.190
    168920512006Interactions between E2F1 and SirT1 regulate apoptotic response to DNA damage.160
    127174392003Chk2 activates E2F-1 in response to DNA damage.141
    200290462010Cell-cycle regulator E2F1 and microRNA-223 comprise an autoregulatory negative feedback loop in acute myeloid leukemia.129
    123890322002Direct coupling of the cell cycle and cell death machinery by E2F.126

    Citation

    Michael Zachariadis ; Vassilios G Gorgoulis

    E2F1 (E2F transcription factor 1)

    Atlas Genet Cytogenet Oncol Haematol. 2008-12-01

    Online version: http://atlasgeneticsoncology.org/gene/40382/favicon/favicon-32x32.png