ITGA6 (integrin, alpha 6)
2013-04-01 Young Hwa Soung  , Jun Chung   AffiliationLouisiana State University Health Sciences Center - Shreveport, Dept of Biochemistry, Molecular Biology, 1501 Kings Highway PO Box 33932, Shreveport, LA 71130-3932, USA
Identity
HGNC
LOCATION
2q31.1
IMAGE

LEGEND
Figure 1. Schematic diagram of ITGA6 location on chromosome 2. Chromosome 2 is represented with banding pattern. ITGA6 is located at 31.1 and ranges from 173292314 to 173371181 on reverse strand. The region surrounding ITGA6 is enlarged. Genes are represented by arrows in the direction of transcription.
LOCUSID
ALIAS
CD49f,ITGA6B,VLA-6
FUSION GENES
DNA/RNA
Description
ITGA6 (Gene ID: 3655) is located on chromosome 2 at 2q31.1. Gene ranges from 173292314 to 173371181 on the plus strand with a total length of 78870 bp.
Transcription
The ITGA6 gene has 2 transcript variants encoding two different isoforms. Transcript variant 1 (NCBI Accession NM_001079818) encodes the longer isoform a (NP_001073286) comprised of 25 exons. Transcript variant 2 (NCBI Accession NM_000210.2) encodes the shorter isoform b (NP_000201) comprised of 26 exons which has a distinct C-terminus with an alterative coding exon compared to isoform a.
Pseudogene
There are no known pseudogenes.
Proteins
Note
The integrin alpha6 gene encodes for a protein of 10733 amino acid residues (NP_000201), with a molecular mass of 119,467 kDa (P23229 ; UniProKB). It contains a signal peptide, extracellular domain, transmembrane domain and a cytoplasmic domain.

Description
Expression
α6β4 integrin is widely expressed in epithelia and in a few other cell types such as thymocytes, fibloblasts, and Schwann cells. α6β1 integrin is expressed in platelets, leukocytes and many epithelial cells.
Localisation
Cell surface and hemidesmosome (Sonnenberg et al., 1991; Alt et al.,2001; Geuijen and Sonnenberg, 2002).
Function
Both α6β1 integrin and α6β4 integrin are receptors for the laminin family of extracellular matrix proteins. α6β4 integrin in epithelial cells plays an essential role in strengthening and stabilizing the skin tissue through the formation of hemidesmosome (Dowling et al., 1996; Nievers et al., 1999; Sterk et al., 2000). α6β1 integrin contributes to the formation of organs and tissues before birth (Georges-Labouesse et al., 1996; Niculescu et al., 2011). In malignant carcinoma cells, both of these integrins serve as signaling receptors that triggers signaling cascades that enhance survival, invasion and metastasis (reviewed in Mercurio et al., 2001).
Homology
Mouse, rat and human homologs of ITGA6 share greater than 90% amino acid identity.
Mutations
Note
A homozyous 1-bp deletion mutation (791delC) have been identified in an infant with epidermolysis bullosa with pyloric atresia and esophageal stenosis (Ruzzi et al., 1997).
Implicated in
Entity name
Glioblastoma multiforme
Note
Lathia et al identified integrin α6 as a hallmark of glioblastoma stem cells (GSCs) (Lathia et al., 2010). In this study, authors find that integrin α6 is co-expressed with conventional GSC markers such as CD15 and CD133, and localized to the perivascular compartment. However, integrin α6 expression enriches for GSCs lacking CD133 expression. Combining expression of both CD133 and integrin α6 led to higher enrichment of GSCs than CD133 alone did. shRNA mediated knockdown of integrin α6 expression results in a reduction of GSC phenotype such as GSC self renewal and tumor formation. The results suggest that integrin α6 is a promising target for antiglioblastoma therapy.
Disease
Glioblastoma Multiforme (GBM) is the most common and malignant primary brain tumor with poor prognosis (Singh et al., 2004). Upon diagonosis, 5 year survival rate is less the 3%. GBM is almost incurable because it is cellular heterogeneous and GBM mass invade functional brain area, which makes impossible for the surgeons to totally remove the cancer tissues. Also, it is resistant to the radiation and other treatments (Stupp et al., 2005). Recently, Integrin α6 garnered a lot of attention as potential candidate for effective glioblastoma therapeutic target due to its high expression in neural stem cells and ability to interact with laminin (Lathia et al., 2010).
Entity name
Breast cancer
Note
Both α6β1 integrin and α6β4 integrin contribute to survival of breast carcinoma cells under stress conditions (Chung et al., 2002; Chung et al., 2004a) through upregulation of VEGF expression, either at the level of transcription or translation. The α6β4 integrin dependent translation of VEGF derives from the ability of this integrin to stimulate AKT/mTOR pathway (Chung et al., 2002). Under hypoxic condition, the α6β1 integrin is required for transcriptional activation of VEGF via HIF-1 (Chung et al., 2004b). α6β4 integrin is implicated in invasion and metastasis of breast carcinoma cells via activation of PI3K/AKT pathway when it is mobilized from hemidesmosome into leading edges (Lipscomb et al., 2005).
Disease
It is the most common cancer among women and the second leading cause of cancer deaths of women in US. Breast cancer is 100 times more common in women than in men. Despite of its mortality, it is mostly curable disease when it is detected at early stages. Microarray gene expression analysis defines four distinct sub-types of breast cancer, including hormone receptor (HR) positive luminal A and B, human epidermal growth receptor 2 (HER2/neu)-enriched and basal-like breast cancer (BLBC) (Perou et al., 2000). BLBC represent 17% to 37% of all breast cancers and is one of the most aggressive breast cancer sub-types with poor prognosis (Irvin and Carey, 2008). Expression of α6β4 integrin significantly correlates with BLBC (Lu et al., 2008)
Prognosis
High expression of integrin α6 in women with breast cancer significantly correlated with reduced survival times (Friedrich et al., 1995; Chung et al., 2004a). Co-expression of α6β4 integrin and laminin in breast tumors has been correlated with poor prognosis (Tagliabue et al., 1998). Co-expression of both α6β4 integrin and Net1 (RhoA-specific guanine nucleotide exchange factor) is correlated with a high risk of distant metastasis in patients with hormone receptor-positive tumors (Gilcrease et al., 2009).
Entity name
Epidermolysis bullosa letalis with pyloric atresia (EB-PA)
Note
EB-PA is a rare autosomal recessive genetic disease with a poor progonosis. It represents frequently lethal, epidermolysis bullosa with variable involvement of skin, nails, mucosa. EB-PA is caused by defects in ITGA6. The mutations in the genes encoding two subunit polypeptides of the α6β4 integrin (ITGA 6 and ITGA4) have been reported in the patients with EB-PA (Chung and Uitto, 2010).
Disease
Mucocutaneous fragility, aplasia cutis congenita, and gastrointestinal atresia are common symptoms that affects the pylorus.
Entity name
Prostate cancer
Note
Integrin α6β1 contributes to migration and invasion of protsate cancer cells through cell surface cleavage of integrin α6 in uPA induced manner (Rabinovitz et al., 1995; Demetriou et al., 2004; Pawar., 2007; Ports et al., 2009).
Disease
It is the form of cancer that develops in a gland in the male reproductive system. While a majority of prostate cancer grow slowly, some cases of aggressive prostate cancer involve metastasis to the bones and lymph nodes. Prostate cancer usually occurs in older men. No early symptoms are reported in many cases of prostate cancer, but some patients may experience urinary symptoms and discomfort. Treatment options include surgery, chemotherapy, crytherapy, hormonal therapy, and/or radiation.
Article Bibliography
| Pubmed ID | Last Year | Title | Authors |
|---|---|---|---|
| 11389095 | 2001 | Protein kinase Cdelta-mediated phosphorylation of alpha6beta4 is associated with reduced integrin localization to the hemidesmosome and decreased keratinocyte attachment. | Alt A et al |
| 19945615 | 2010 | Epidermolysis bullosa with pyloric atresia. | Chung HJ et al |
| 12105188 | 2002 | Integrin (alpha 6 beta 4) regulation of eIF-4E activity and VEGF translation: a survival mechanism for carcinoma cells. | Chung J et al |
| 15179031 | 2004 | Contributions of the alpha6 integrins to breast carcinoma survival and progression. | Chung J et al |
| 15256436 | 2004 | Hypoxia-induced vascular endothelial growth factor transcription and protection from apoptosis are dependent on alpha6beta1 integrin in breast carcinoma cells. | Chung J et al |
| 15023541 | 2004 | Extracellular alpha 6 integrin cleavage by urokinase-type plasminogen activator in human prostate cancer. | Demetriou MC et al |
| 8707838 | 1996 | Beta4 integrin is required for hemidesmosome formation, cell adhesion and cell survival. | Dowling J et al |
| 7850807 | 1995 | High expression level of alpha 6 integrin in human breast carcinoma is correlated with reduced survival. | Friedrichs K et al |
| 8673141 | 1996 | Absence of integrin alpha 6 leads to epidermolysis bullosa and neonatal death in mice. | Georges-Labouesse E et al |
| 12429829 | 2002 | Dynamics of the alpha6beta4 integrin in keratinocytes. | Geuijen CA et al |
| 19124484 | 2009 | Coexpression of alpha6beta4 integrin and guanine nucleotide exchange factor Net1 identifies node-positive breast cancer patients at high risk for distant metastasis. | Gilcrease MZ et al |
| 19008097 | 2008 | What is triple-negative breast cancer? | Irvin WJ Jr et al |
| 20452317 | 2010 | Integrin alpha 6 regulates glioblastoma stem cells. | Lathia JD et al |
| 16258729 | 2005 | Mobilization and activation of a signaling competent alpha6beta4integrin underlies its contribution to carcinoma progression. | Lipscomb EA et al |
| 18281537 | 2008 | Analysis of integrin beta4 expression in human breast cancer: association with basal-like tumors and prognostic significance. | Lu S et al |
| 11684709 | 2001 | EGF-R signaling through Fyn kinase disrupts the function of integrin alpha6beta4 at hemidesmosomes: role in epithelial cell migration and carcinoma invasion. | Mariotti A et al |
| 11544021 | 2001 | The alpha 6 beta 4 integrin and epithelial cell migration. | Mercurio AM et al |
| 20965608 | 2011 | Conditional ablation of integrin alpha-6 in mouse epidermis leads to skin fragility and inflammation. | Niculescu C et al |
| 10367727 | 1999 | Biology and function of hemidesmosomes. | Nievers MG et al |
| 17303120 | 2007 | Integrin alpha6 cleavage: a novel modification to modulate cell migration. | Pawar SC et al |
| 10963602 | 2000 | Molecular portraits of human breast tumours. | Perou CM et al |
| 19491258 | 2009 | Extracellular engagement of alpha6 integrin inhibited urokinase-type plasminogen activator-mediated cleavage and delayed human prostate bone metastasis. | Ports MO et al |
| 7586806 | 1995 | Integrin alpha 6 expression in human prostate carcinoma cells is associated with a migratory and invasive phenotype in vitro and in vivo. | Rabinovitz I et al |
| 9185503 | 1997 | A homozygous mutation in the integrin alpha6 gene in junctional epidermolysis bullosa with pyloric atresia. | Ruzzi L et al |
| 15549107 | 2004 | Identification of human brain tumour initiating cells. | Singh SK et al |
| 2026654 | 1991 | Integrin alpha 6/beta 4 complex is located in hemidesmosomes, suggesting a major role in epidermal cell-basement membrane adhesion. | Sonnenberg A et al |
| 10811835 | 2000 | The tetraspan molecule CD151, a novel constituent of hemidesmosomes, associates with the integrin alpha6beta4 and may regulate the spatial organization of hemidesmosomes. | Sterk LM et al |
| 15758009 | 2005 | Radiotherapy plus concomitant and adjuvant temozolomide for glioblastoma. | Stupp R et al |
| 9516929 | 1998 | Prognostic value of alpha 6 beta 4 integrin expression in breast carcinomas is affected by laminin production from tumor cells. | Tagliabue E et al |
Other Information
Locus ID:
NCBI: 3655
MIM: 147556
HGNC: 6142
Ensembl: ENSG00000091409
Variants:
dbSNP: 3655
ClinVar: 3655
TCGA: ENSG00000091409
COSMIC: ITGA6
RNA/Proteins
Expression (GTEx)
Pathways
Protein levels (Protein atlas)
References
| Pubmed ID | Year | Title | Citations |
|---|---|---|---|
| 38369001 | 2024 | m6A/HOXA10-AS/ITGA6 axis aggravates oxidative resistance and malignant progression of laryngeal squamous cell carcinoma through regulating Notch and Keap1/Nrf2 pathways. | 1 |
| 38680094 | 2024 | Long noncoding RNA SNHG3 interacts with microRNA-502-3p to mediate ITGA6 expression in liver hepatocellular carcinoma. | 1 |
| 38369001 | 2024 | m6A/HOXA10-AS/ITGA6 axis aggravates oxidative resistance and malignant progression of laryngeal squamous cell carcinoma through regulating Notch and Keap1/Nrf2 pathways. | 1 |
| 38680094 | 2024 | Long noncoding RNA SNHG3 interacts with microRNA-502-3p to mediate ITGA6 expression in liver hepatocellular carcinoma. | 1 |
| 35820930 | 2023 | Poor Prognosis of Oral Squamous Cell Carcinoma Correlates With ITGA6. | 3 |
| 35820930 | 2023 | Poor Prognosis of Oral Squamous Cell Carcinoma Correlates With ITGA6. | 3 |
| 33404136 | 2022 | Silencing integrin α6 enhances the pluripotency-differentiation transition in human dental pulp stem cells. | 2 |
| 34600083 | 2022 | IGF1R-α6 integrin-S100A4 network governs the organ-specific metastasis of chemoresistant epithelial ovarian cancer cells. | 7 |
| 35025009 | 2022 | Integrin α6 overexpression promotes lymphangiogenesis and lymphatic metastasis via activating the NF-κB signaling pathway in lung adenocarcinoma. | 7 |
| 35288170 | 2022 | Extracellular vesicle-mediated delivery of miR-127-3p inhibits the proliferation and invasion of choriocarcinoma cells by targeting ITGA6. | 3 |
| 35316874 | 2022 | [MiR-4484 regulates the expression of integrin α 6 in gastric cancer tissues and its significance]. | 0 |
| 35346995 | 2022 | Integrin α6A (ITGA6A)-type Splice Variant in Extracellular Vesicles Has a Potential as a Novel Marker of the Early Recurrence of Pancreatic Cancer. | 5 |
| 35405272 | 2022 | Pancreatic ductal adenocarcinoma cells employ integrin α6β4 to form hemidesmosomes and regulate cell proliferation. | 2 |
| 35657344 | 2022 | Integrin alpha 6 is upregulated and drives hepatocellular carcinoma progression through integrin α6β4 complex. | 4 |
| 35835740 | 2022 | TM4SF1 promotes esophageal squamous cell carcinoma metastasis by interacting with integrin α6. | 4 |
Citation
Young Hwa Soung ; Jun Chung
ITGA6 (integrin, alpha 6)
Atlas Genet Cytogenet Oncol Haematol. 2013-04-01
Online version: http://atlasgeneticsoncology.org/gene/41007/itga6-(integrin-alpha-6)
