Functional Genomics Unit - Institute of Neurogical Sciences - Italian National Research Council - Catania- Italy. sebastiano.cavallaro@cnr.it; valentina.lacognata@functional-genomics.it
PARK2 (also known as Parkin RBR E3 ubiquitin protein ligase) is one of the largest genes in our genome. It undergoes an extensive alternative splicing both at transcript and protein level, producing multiple transcript variants and distinct protein isoforms. The precise function of PARK2 is still not clear; however, the encoded protein is a component of a multiprotein E3 ubiquitin ligase complex that mediates the targeting of substrates for proteasomal degradation. Mutations in this gene cause Parkinson disease and autosomal recessive juvenile Parkinson disease. Further molecular defects have been linked to other human malignancies. Here, we review some major data on PARK2, concerning the genetic structure, the transcription regulation, the encoded protein and functions, and its implication in human diseases.
Gene
#mRNA
Acc.Num.
Transcript Length
PARK2
1.
NM_004562.2
4073 bp
2.
AF381282.1
1157 bp
3.
AF381284.1
1158 bp
4.
BC022014.2
1575 bp
5.
NM_013987.2
3989 bp
6.
NM_013988.2
3626 bp
7.
AK294684.1
1115 bp
8.
GU345837.1
1298 bp
9.
GU345838.1
1340 bp
10.
GU345840.1
1313 bp
11.
GU357501.1
936 bp
12.
GU357502.1
873 bp
13.
GU361466.1
1279 bp
14.
GU361467.1
1229 bp
15.
GU361468.1
1010 bp
16.
GU361469.1
1559 bp
17.
GU361470.1
1561 bp
18.
GU361471.1
634 bp
19.
KC357594.1
454 bp
20.
KC357595.1
1627 bp
21.
KC774171.1
1282 bp
Domain
Start
Stop
E-value
UBQ
1
72
2.95e-16
IBR
313
377
4.49e-14
401
457
0.142
Mutation Type
Mutant samples
Substitution nonsense
6
Substitution missense
105
Substitution synonymous
52
Insertion inframe
0
Insertion frameshift
2
Deletion inframe
Deletion frameshift
4
Complex
Other
NCBI: 5071 MIM: 602544 HGNC: 8607 Ensembl: ENSG00000185345
dbSNP: 5071 ClinVar: 5071 TCGA: ENSG00000185345 COSMIC: PRKN
Valentina La Cognata ; Sebastiano Cavallaro
PRKN (arkin RBR E3 ubiquitin protein ligase )
Atlas Genet Cytogenet Oncol Haematol. 2015-12-01
Online version: http://atlasgeneticsoncology.org/gene/46408/prkn-(arkin-rbr-e3-ubiquitin-protein-ligase-)