Bone: Sarcoma with inv(X)(p11.4p11.22) BCOR/CCNB3

2013-03-01   Olivier Delattre  , Sarah Cohen-Gogo  , Gaëlle Pierron  

1.Institut Curie, Unite de Genetique Somatique - Centre Hospitalier, Paris, France et Unite 830 Institut National de la Sante et la Recherche Medicale (INSERM), Institut Curie - Centre de Recherche, Paris, France (OD); Institut Curie, Unite de Genetique Somatique - Centre Hospitalier, Paris, France (SCG); Unite 830 Institut National de la Sante et la Recherche Medicale (INSERM), Institut Curie - Centre de Recherche, Paris, France (GP)

Summary

Note

BCOR-CCNB3 Ewing-like tumors form a histologically heterogeneous family belonging to the group of small round cell tumors, just as EWS-ETS positive "classical" Ewing.

Clinics and Pathology

Note

Description of this new clinical entity in the literature is recent (Pierron et al., 2012). Clinical data of this small cohort of patients is under current study and only few pieces can be displayed for now.

Epidemiology

BCOR-CCNB3 RT-PCR screening of a series of transcript-negative sarcomas yielded a total of 24 positive cases, out of 594 (4%), meaning this entity is rare among the rare transcript-negative sarcomas.

Clinics

Clinical description is highly similar to that of Ewing sarcoma, with a median age of occurrence of 13 years, a sex ratio desequilibrated towards males, and tumors affecting preferentially long bones, the spine and pelvis. 20% of patients presented with a soft tissue tumor.

Pathology

Pathological reports were consistent with an undifferentiated, small round cell sarcoma, suggestive of the Ewing sarcoma family of tumors. However, in contrast to Ewing sarcoma, approximately half of the cases lacked strong membrane positivity for CD99. BCOR-CCNB3-positive cases that were tested exhibited strong nuclear CCNB3 staining. This finding highlights the potential usefulness of a simple CCNB3 immunohistochemical assay as a diagnostic test for this subgroup of sarcoma.
Atlas Image
Hematoxylin and eosin staining and immunohistochemical analysis of CD99 and CCNB3 in a Ewing case as well as in two BCOR-CCNB3-positive cases. Courtesy Jean-Michel Coindre.

Treatment

Due to the recent description of this entity, retrospective work on received treatment is on-going. Still, the treatment of these tumors is generally based on combined therapy with chemotherapy associated to best local treatment.

Prognosis

Retrospective work on outcome of patients harboring BCOR-CCNB3 positive tumors in on-going. As in all sarcomas, prognosis might be influenced by the presence of metastases at the time of diagnosis.

Cytogenetics

Atlas Image
A paracentric inversion on the X chromosome was seen in FISH experiments. BACs flanking BCOR were labeled with FITC, and BACs flanking CCNB3 were labeled with rhodamine. In control cells, (a lymphoblastoid cell line), the two red spots (or the two green spots) are in close proximity and appear either as a single spot or as unicolor doublets. In BCOR-CCNB3-positive cells with paracentric inversion on the X chromosome, the two red and green spots are split and appear as bicolored doublets.

Cytogenetics morphological

BCOR-CCNB3 Ewing-like tumors show a X-chromosome paracentric inversion; the inversion results in fusion of the complete coding sequence of the BCOR gene to the last 8 exons of CCNB3, leading to a hybrid transcript and an oncogenic chimeric protein.
Atlas Image
Structure of the BCOR-CCNB3 cDNA. The sequence of the BCOR-CCNB3 junction is shown, with the encoded protein sequence reported below it. Red dashed line and arrow indicate the fusion point.

Additional anomalies

SNP6.0 arrays detected no alteration in 11 of the 18 BCOR-CCNB3 Ewing-like cases studied. In the other seven cases, the only recurrent abnormalities were deletions at chromosomes 17p and 10q, each observed in two cases. Neither deletion nor amplification of the fusion partners was observed. Of note, the most frequent copy-number abnormalities of Ewing sarcoma, particularly the gain at chromosome 8 that is observed in ~50% of Ewing sarcoma cases, and the gain of 1q or chromosome 12 or the loss of 16q, which are each observed in ~25% of Ewing sarcoma cases, were not recurrent characteristics of BCOR-CCNB3-positive cases. These data indicate that classic Ewing sarcomas and BCOR-CCNB3-positive tumors do not share common copy-number changes.

Genes Involved and Proteins

Gene name

BCOR (BCL6 corepressor)

Location

Xp11.4

Protein description

interacting co-repressor of BCL6.

Gene name

CCNB3 (cyclin B3)

Location

Xp11.22

Protein description

Cyclin B3, early meiotic cyclin in spermatogenesis.

Result of the chromosomal anomaly

Transcript

The complete coding sequence of the BCOR gene is fused to the last 8 exons of CCNB3, leading to a hybrid transcript and an oncogenic chimeric protein. The stop codon of BCOR (TGA) is included within a putative GGTGAG donor splice-site sequence. Thus, the most likely hypothesis accounting for the fusion mRNA is that this cryptic donor site is spliced with the acceptor site of exon 5 of CCNB3. Splicing was found to be incomplete, leading to both BCOR-CCNB3 and wild-type BCOR expression.

Detection protocole

Sequence should yield a unique and tumor specific PCR product of 290pb.

Description

The full fusion protein is expected to have a molecular weight of 337 kDa and to include the three known ankyrin domains of BCOR as well as the two known cyclin domains of CCNB3.

Oncogenesis

5-bromodeoxyuridine (BrdU) staining of mouse NIH3T3 fibroblasts overexpressing BCOR-CCNB3 or ΔCCNB3, a truncated version of CCNB3 corresponding to the portion involved in the fusion gene, was performed. Compared to the empty vector, both expression vectors led to a twofold increase in the proportion of cells in S phase. Although cell cycle analyses clearly show that the CCNB3 portion of the fusion is potentially sufficient to mediate cell cycle effects, it is expected that oncogenesis also relies on additional phenotypic effects from the full-length fusion protein.

Highly cited references

Pubmed IDYearTitleCitations
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294167162018Robust diagnosis of Ewing sarcoma by immunohistochemical detection of super-enhancer-driven EWSR1-ETS targets.66
348193042022Clinicopathologic and molecular analysis of a BCOR-CCNB3 undifferentiated sarcoma of the kidney reveals significant epigenetic alterations.57
355370052022Soft Tissue and Visceral Organ Sarcomas With BCOR Alterations.51
367658562023Molecular Identification and In Silico Protein Analysis of a Novel BCOR-CLGN Gene Fusion in Intrathoracic BCOR-Rearranged Sarcoma.51
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372124862023Clinical characteristics and outcomes for children, adolescents and young adults with "CIC-fused" or "BCOR-rearranged" soft tissue sarcomas: A multi-institutional European retrospective analysis.40
358363062022Paediatric BCOR-associated sarcomas with a novel long spliced internal tandem duplication of BCOR exon 15.40
265733252015Recurrent internal tandem duplications of BCOR in clear cell sarcoma of the kidney.39
293001892018BCOR-CCNB3 Fusion Positive Sarcomas: A Clinicopathologic and Molecular Analysis of 36 Cases With Comparison to Morphologic Spectrum and Clinical Behavior of Other Round Cell Sarcomas.38
267525462016Novel BCOR-MAML3 and ZC3H7B-BCOR Gene Fusions in Undifferentiated Small Blue Round Cell Sarcomas.38
383320522024Small cell osteosarcoma versus fusion-driven round cell sarcomas of bone: retrospective clinical, radiological, pathological, and (epi)genetic comparison with clinical implications.38
320486192019Clinicopathologic features of undifferentiated round cell sarcomas of bone & soft tissues: An attempt to unravel the BCOR-CCNB3- & CIC-DUX4-positive sarcomas.37
253605852015BCOR-CCNB3 fusions are frequent in undifferentiated sarcomas of male children.33
328718372020A Case Series of BCOR Sarcomas With a New Splice Variant of BCOR/CCNB3 Fusion Gene.33
288174042017Primary Renal Sarcomas With BCOR-CCNB3 Gene Fusion: A Report of 2 Cases Showing Histologic Overlap With Clear Cell Sarcoma of Kidney, Suggesting Further Link Between BCOR-related Sarcomas of the Kidney and Soft Tissues.31
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Article Bibliography

Pubmed IDLast YearTitleAuthors
223879972012A new subtype of bone sarcoma defined by BCOR-CCNB3 gene fusion.Pierron G et al

Citation

Olivier Delattre ; Sarah Cohen-Gogo ; Gaëlle Pierron

Bone: Sarcoma with inv(X)(p11.4p11.22) BCOR/CCNB3

Atlas Genet Cytogenet Oncol Haematol. 2013-03-01

Online version: http://atlasgeneticsoncology.org/solid-tumor/6411/bone-sarcoma-with-inv(x)(p11-4p11-22)-bcor-ccnb3