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CSNK1A1 (casein kinase 1, alpha 1)

Identity

Other namesCK1
CKI-alpha
EC 2.7.11.1
HLCDGP1
PRO2975
HGNC (Hugo) CSNK1A1
Location 5q32
Location_base_pair Starts at 148855038 and ends at 148911200 bp from pter ( according to hg18-Mar_2006)  [Mapping]
Note Member of the casein kinase family of serine/threonine protein kinases.

DNA/RNA

 
  Diagram of hCK1 alpha gene. Exons for both isoforms are presented as red boxes, with exon mumbers at the bottom.
Description According to Entrez-Gene, CNK1 alpha1 gene maps to NC_000005.8.
Transcription In mammals, 7 distinct genes encoding CK1 isoforms (CK1 alpha, CK1 beta, CK1 gamma1, CK1 gamma2, CK1 gamma3, CK1 delta and CK1 epsilon) are expressed which differ mainly in length and primary structure of the C-terminal non-catalytic domain. Furthermore, CK1 alpha splice variants have been detected in many different organisms including vertebrates and mammals. Alternative splicing leads to the insertion of a long (L, 28 aa) or a short (S, 12 aa) insert into the catalytic C-terminal domain of CK1 alpha and generates different splicing products (CK1 alpha, CK1 alphaL, CK1 alphaS, CK2 alphaLS, alpha3) that differ in kinase activity, function and subcellular localization.
In humans at least two isoforms of CK1 alpha have been identified encoding a 3149 bp (isoform1/NM_001025105) or 3061 bp (isoform2/NM_001892) mRNA, respectively.

Protein

Note The hCK1 alpha isoforms are composed of 365 or 337 amino acids and have a calculated molecular weight of 41,9 or 38,9 kDa, respectively. Both isoforms contain a putative near-consensus SV40 T-antigen nuclear localization sequence.
Description CK1 alpha is a second messenger-independent, monomeric, serine/threonine specific protein kinase that recognizes a canonical consensus sequence pS/pT-X1-2-S/T or (D/E)-X1-2-S/T. Additionally, a noncanonical sequence containing a SLS motif followed by a cluster of acidic residues C-terminal of the phosphoacceptor site is recognized by CK1.
Localisation The protein kinase CK1 alpha is ubiquitously expressed in all tissues and detected in all cellular compartments.
Function Mammalian CK1 isoforms and their splice variants are involved in diverse cellular processes including membrane trafficking, circadian rhythm, cell cycle progression, chromosome segregation, apoptosis and cellular proliferation and differentiation.

Implicated in

Entity Cell cycle control
Note CK1 alpha phosphorylates the tumor suppressor p53 although it seems as if CK1 delta is the most important kinase in the regulation of p53 activity and interacts with several cellular proteins including the oncoprotein Mdm2.
  
Entity Apoptosis
Note Recently is has been shown, that CK1 is involved in negatively regulating apoptosis through phosphorylation of diverse cellular proteins including the p75 tumor necrosis factor, proteins of the death-inducing signaling complex (TRAIL induced apoptosis) or Bid (FAS-mediated apoptosis).
It is thought, that CK1 mediated phosphorylation at the level of death-inducing signaling complex (DISC) leads to resistance against caspase cleavage and thereby down regulation of TRAIL (tumor necrosis-factor-related apoptosis ligand) induced apoptosis.
Furthermore, there is evidence that CK1 alpha regulates Fas-mediated apoptosis through phosphorylation of the proapoptotic Bcl2 family member Bid, which prevents caspase 8-dependant cleavage of Bid and negatively influences Fas response.
Additionally, evidence has increased that CK1 alpha modulates RXR agonist mediated apoptosis through interaction and/or phosphorylation of RXR, which prevents cytochrome C realease from the mitochondria.
  
Entity Wnt signaling
Note The Wnt pathway is a complex signaling cascade regulating cell proliferation and differentiation. During recent years, the significance of Wnt signaling in human cancer has been elucidated. Identification of numerous pathway components and mutations in the encoding genes finally result in stabilization and accumulation of beta-Catenin and enhanced transcription of TCF/LEF- beta-Catenin target genes.
CK1 alpha is part of the beta-Catenin destruction complex where it phosphorylates beta-Catenin at Serin 45, priming the subsequent phosphorylation of beta-Catenin by GSK3 beta. These phosphorylations mark beta-Catenin for proteasomal degradation. This is one of the central regulatory events controling the Wnt signaling-pathway.
Furthermore, CK1 has been shown to additionally regulate Wnt-signaling through phosphorylation of diverse cellular proteins including LEF-1 (lymphocyte enhancer factor-1) and beta-Catenin leading to the disruption of the LEF-1/ beta-Catenin transcription complex.
For additional information about Wnt-signaling in general, Wnt-signaling components and Wnt target genes, readers are referred to the Wnt-Homepage posted by the Nusse group.
  
Entity Neurodegenerative disorders
Note Deregulation of CK1 expression and activity has been linked to various diseases including neurodegenerative disorders, especially in tauophathies like Alzheimer's and Parkinson's disease.
  

External links

Nomenclature
HGNC (Hugo)CSNK1A1   2451
Entrez_Gene (NCBI)CSNK1A1  1452  casein kinase 1, alpha 1
Cards
AtlasCSNK1A1ID40168ch5q32
GeneCards (Weizmann)CSNK1A1
Ensembl (Hinxton)ENSG00000113712 [Gene_View]  CSNK1A1 [Vega]
AceView (NCBI)CSNK1A1
Genatlas (Paris)CSNK1A1
euGene (Indiana)1452
SOURCE (Stanford)NM_001025105 NM_001892
Gene Expression (Array Express) ENSG00000113712
Genomic and cartography
GoldenPath (UCSC)CSNK1A1  -  5q32   chr5:148855038-148911200 -  5q32   [Description]    (hg18-Mar_2006)
EnsemblCSNK1A1 - 5q32 [CytoView]
Mapping of homologs : NCBICSNK1A1 [Mapview]
OMIM600505   
Gene and transcription
Gene : Genbank (Entrez)AF218004 AF447582 AK293761 AK294099 AK294942
Reference sequence (RefSeq transcript) :SRSNM_001025105 NM_001892
Reference transcript : EntrezNM_001025105 NM_001892
RefSeq genomic : SRSAC_000048 AC_000137 NC_000005 NT_029289 NW_001838953 NW_922784
RefSeq genomic : EntrezAC_000048 AC_000137 NC_000005 NT_029289 NW_001838953 NW_922784
Consensus coding sequences : CCDS NCBICSNK1A1
Cluster EST : UnigeneHs.712555 [ SRS ] Hs.712555 [ NCBI ]
Alternative Splicing : Fast-db (Paris)11937
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP48729 (SRS) P48729 (Expasy) P48729 (Uniprot)
With graphics : InterProP48729
Splice isoforms : VarSplice FASTAP48729(VarSplice FASTA)
Domaine pattern : Prosite (SRS)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domain pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_ST (PS00108)   
Domains : Interpro (SRS)Kinase-like_dom    Prot_kinase_cat_dom    Protein_kinase_ATP_BS    Se/Thr_prot_kinase-like_dom    Ser/Thr_prot_kinase_AS   
Domains : Interpro (EBI)Kinase-like_dom    Prot_kinase_cat_dom    Protein_kinase_ATP_BS    Se/Thr_prot_kinase-like_dom    Ser/Thr_prot_kinase_AS   
Related proteins : CluSTrP48729
Domain families : Pfam SRSPkinase (PF00069)   
Domain families : Pfam SangerPkinase (PF00069)   
Domain families : Pfam NCBIpfam00069   
Blocks (Seattle)P48729
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD02739
Protein Interaction databases
DIP (DOE-UCLA)P48729
IntAct (EBI)P48729
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBICSNK1A1
SNP : GeneSNP UtahCSNK1A1
SNP : HGBaseCSNK1A1
Genetic variants : HAPMAPCSNK1A1
Somatic Mutations in Cancer : COSMICCSNK1A1 
Mutations and Diseases : HGMDCSNK1A1
Hereditary diseases : OMIM600505   
Hereditary diseases : GENETests600505   
Diseases : Genetic AssociationCSNK1A1
General knowledge
Homologs : HomoloGeneCSNK1A1
Homology/Alignments : Family Browser UCSCCSNK1A1
Phylogenetic Trees/Animal Genes : TreeFamCSNK1A1
Catalytic activity : Enzyme2.7.11.1 [ Enzyme-Expasy ]   2.7.11.1 [ Enzyme-SRS ]   2.7.11.1 [ IntEnz-EBI ]   2.7.11.1 [ BRENDA ]   2.7.11.1 [ KEGG ]   
Chemical/Protein Interactions : CTD1452
Keywords Ontology : AmiGOnucleotide binding  protein serine/threonine kinase activity  protein binding  ATP binding  cytoplasm  cytosol  protein amino acid phosphorylation  Wnt receptor signaling pathway  transferase activity  
Keywords Ontology : EGO-EBInucleotide binding  protein serine/threonine kinase activity  protein binding  ATP binding  cytoplasm  cytosol  protein amino acid phosphorylation  Wnt receptor signaling pathway  transferase activity  
Pathways : BIOCARTANFAT and Hypertrophy of the heart (Transcription in the broken heart) [Genes]    Deregulation of CDK5 in Alzheimers Disease [Genes]    Hypoxia and p53 in the Cardiovascular system [Genes]    WNT Signaling Pathway [Genes]   
Pathways : KEGGWnt signaling pathwayHedgehog signaling pathwayGap junctionCircadian rhythm
Other databases
Probes
Probes : ImagenesCSNK1A1 Related clones (RZPD - Berlin)
Literature
PubMed61 Pubmed reference(s) in Entrez
PubGeneCSNK1A1

Bibliography

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PMID 1409656
 
A casein kinase I isoform is required for proper cell cycle progression in the fertilized mouse oocyte.
Gross SD, Simerly C, Schatten G, Anderson RA.
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PMID 9365278
 
Casein kinase I: spatial organization and positioning of a multifunctional protein kinase family.
Gross SD, Anderson RA.
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PMID 9884021
 
A new molecular link between the fibrillar and granulovacuolar lesions of Alzheimer's disease.
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PMID 10514399
 
Casein kinase 1: a Wnt'er of disconnect.
Polakis P.
Curr Biol. 2002 Jul 23;12(14):R499-R501.
PMID 12176352
 
A noncanonical sequence phosphorylated by casein kinase 1 in beta-catenin may play a role in casein kinase 1 targeting of important signaling proteins.
Marin O, Bustos VH, Cesaro L, Meggio F, Pagano MA, Antonelli M, Allende CC, Pinna LA, Allende JE.
Proc Natl Acad Sci U S A. 2003 Sep 2;100(18):10193-200. Epub 2003 Aug 18.
PMID 12925738
 
A second protein kinase CK1-mediated step negatively regulates Wnt signalling by disrupting the lymphocyte enhancer factor-1/beta-catenin complex.
Hammerlein A, Weiske J, Huber O.
Cell Mol Life Sci. 2005 Mar;62(5):606-18.
PMID 15747065
 
The casein kinase 1 family: participation in multiple cellular processes in eukaryotes.
Knippschild U, Gocht A, Wolff S, Huber N, Lohler J, Stoter M.
Cell Signal. 2005 Jun;17(6):675-89. Epub 2005 Jan 25.
PMID 15722192
 
The role of the casein kinase 1 (CK1) family in different signaling pathways linked to cancer development.
Knippschild U, Wolff S, Giamas G, Brockschmidt C, Wittau M, Wurl PU, Eismann T, Stoter M.
Onkologie. 2005 Oct;28(10):508-14. Epub 2005 Sep 19.
PMID 16186692
 
The role of Wnt signaling in cancer and stem cells.
Reguart N, He B, Taron M, You L, Jablons DM, Rosell R.
Future Oncol. 2005 Dec;1(6):787-97.
PMID 16556058
 
Casein kinase-1 isoforms differentially associate with neurofibrillary and granulovacuolar degeneration lesions.
Kannanayakal TJ, Tao H, Vandre DD, Kuret J.
Acta Neuropathol. 2006 May;111(5):413-21. Epub 2006 Mar 24.
PMID 16557393
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written05-2008Max Doerfel, Otmar Huber
Department of Laboratory Medicine and Pathobiochemistry, Charite - Universitatsmedizin Berlin, Campus Benjamin Franklin, Hindenburgdamm 30, 12203 Berlin, Germany

Citation

This paper should be referenced as such :
Doerfel M, Huber O . CSNK1A1 (casein kinase 1, alpha 1). Atlas Genet Cytogenet Oncol Haematol. May 2008 .
URL : http://AtlasGeneticsOncology.org/Genes/CSNK1A1ID40168ch5q32.html

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indexed on : Sat Feb 27 10:47:58 CET 2010

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