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LCK (lymphocyte-specific protein tyrosine kinase)

Identity

Other namesP56-LCK LSK (T cell-specific protein-tyrosine kinase)
lck tyrosine kinase (AA 1-142)
membrane associated protein tyrosine kinase
proto-oncogene LCK
protein-tyrosine kinase
put. ptk (135aa); tyrosine kinase
HGNC (Hugo) LCK
LocusID (NCBI) 3932
Location 1p34.3
Location_base_pair Starts at 32739712 and ends at 32751766 bp from pter ( according to hg19-Feb_2009)  [Mapping]
 
  Probe(s) - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics

DNA/RNA

 
Description DNA sequence is located on chromosome no.1 on the arm 1(p).
Transcription Consists of 13 exons and 12 introns spanning 12.3 kb.
Pseudogene Unknown

Protein

 
Description The kinase p56lck (509 aa) is a T-lymphocyte-specific member of the Src family of non-receptor protein tyrosine kinase. Lck is a 56 kDa phosphoprotein expressed in variety of lymphoid and non-lymphoid cell lineages. Lck contain myristylation sequence, unique amino-terminal regions, followed by Src homology domains SH3 and SH2, a tyrosine kinase catalytic domain, and C-terminal regulatory domain. Lck associates with the inner face of the plasma membrane through its amino-terminus. This interaction is mediated by both myristic acid and palmitic acid that are bound to the amino terminal glycine and Cys-3 and/or Cys-5. The Unique region of Lck represents the domain possessing the greatest sequence diversity within this group of enzymes. This domain is thought to be involved in the interaction of the Lck with specific cellular proteins including Lck substrate. In T-cells it is known, to mediate association with the cytoplasmic tail of T-cell coreceptors CD4 and CD8a. SH3 (Src homology 3) domain is mainly implicated in the regulation of protein-protein interactions, recognizing proline-rich region found in guanine nucleotide exchange factors and GTPase activating proteins. SH2 (Src homology 2) domain of Lck recognizes phosphorylated tyrosine residues on other proteins thereby facilitating the formation of tyrosine phosphorylation-induced multimeric complexes. The tyrosine kinase domain is the catalytic domain of Lck catalyzing the transfer of the gamma-phosphate from ATP to tyrosine residues on proteins. The catalytic domain contains a site of autophosphorylation (Tyr-394), which plays an important role in regulating the protein kinase activity. A C-terminal regulatory domain is also seen containing the major site of tyrosine phosphorylation in vivo (Tyr-505). Phosphorylation of Csk (C-terminal Src kinase) at Tyr-505 leads to inactivation of Lck. Lck is also activated by oxidative stress. Reoxygenation after hypoxia induces Lck kinase activity.
Expression Expressed in variety of lymphoid and non-lymphoid cell lineages (Breast cancer tissues and other cancers too).
Localisation Cell membrane
Function
  • T-cell development,
  • T-cell activation.
  • Homology Shares sequence homology with other Src family kinases (Src, Hck, Fyn, Blk, Lyn, Fgr, Yes, and Yrk).

    Mutations

    Note Not reported yet

    Implicated in

    Entity Breast cancer, T-cell Leukemia, Colon carcinoma.
    Oncogenesis Upregulation of Lck is seen in many cases of Breast cancer. It is also overexpressed in lymphoma, colon cancer. Rearrangement of LCK gene is also reported in murine lymphoma cell line. Oncogenic activation of Lck due translocation of the LCK gene is reported in the human HSB2 T-cell leukemia with t(1;7)(p34;q34) with LCK/ TCRB involvement. Lck regulates cell motility through NF-KB mediated uPA secretion following hypoxia and reoxygenation in Breast cancer.
      
    Disease Type 1 Diabetes
    Prognosis T-cell mediated Type diabetes (Autoimmune disease) shows defect in TCR/CD3-mediated T-cell activation due to the abnormal expression of LCK.
      

    External links

    Nomenclature
    HGNC (Hugo)LCK   6524
    Entrez_Gene (NCBI)LCK  3932  lymphocyte-specific protein tyrosine kinase
    Cards
    AtlasLCKID14ch1p34
    GeneCards (Weizmann)LCK
    Ensembl (Hinxton)ENSG00000182866 [Gene_View]  chr1:32739712-32751766 [Contig_View]  LCK [Vega]
    AceView (NCBI)LCK
    Genatlas (Paris)LCK
    euGene (Indiana)3932
    SOURCE (Stanford)NM_001042771 NM_005356
    Genomic and cartography
    GoldenPath (UCSC)LCK  -  1p34.3   chr1:32739712-32751766 +  1p34.3   [Description]    (hg19-Feb_2009)
    EnsemblLCK - 1p34.3 [CytoView]
    Mapping of homologs : NCBILCK [Mapview]
    OMIM153390   
    Gene and transcription
    Genbank (Entrez)AA747421 AF228313 AJ865079 AK098027 AK303073
    RefSeq transcript (SRS)NM_001042771 NM_005356
    RefSeq transcript (Entrez)NM_001042771 NM_005356
    RefSeq genomic (SRS)AC_000133 NC_000001 NG_023387 NT_032977 NW_001838577
    RefSeq genomic (Entrez)AC_000133 NC_000001 NG_023387 NT_032977 NW_001838577
    Consensus coding sequences : CCDS (NCBI)LCK
    Cluster EST : UnigeneHs.470627 [ SRS ] Hs.470627 [ NCBI ]
    Alternative Splicing : Fast-db (Paris)12917
    Alternative Splicing GalleryENSG00000182866
    Gene ExpressionLCK [ NCBI-GEO ]   LCK [ EBI - ARRAY_EXPRESS ]
    Protein : pattern, domain, 3D structure
    UniProt/SwissProtP06239 (SRS) P06239 (Uniprot)
    With graphics : InterProP06239
    Splice isoforms : SwissVarP06239(Swissvar)
    Domaine pattern : Prosite (SRS)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_TYR (PS00109)    SH2 (PS50001)    SH3 (PS50002)   
    Domaine pattern : Prosite (Expaxy)PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_TYR (PS00109)    SH2 (PS50001)    SH3 (PS50002)   
    Domains : Interpro (SRS)Kinase-like_dom    Prot_kinase_cat_dom    Protein_kinase_ATP_BS    Ser-Thr/Tyr_kinase_cat_dom    SH2    SH3_domain    Tyr_kinase_AS    Tyr_kinase_cat_dom   
    Domains : Interpro (EBI)Kinase-like_dom    Prot_kinase_cat_dom    Protein_kinase_ATP_BS    Ser-Thr/Tyr_kinase_cat_dom    SH2    SH3_domain    Tyr_kinase_AS    Tyr_kinase_cat_dom   
    Related proteins : CluSTrP06239
    Domain families : Pfam (SRS)Pkinase_Tyr (PF07714)    SH2 (PF00017)    SH3_1 (PF00018)   
    Domain families : Pfam (Sanger)Pkinase_Tyr (PF07714)    SH2 (PF00017)    SH3_1 (PF00018)   
    Domain families : Pfam (NCBI)pfam07714    pfam00017    pfam00018   
    Domain families : Smart (EMBL)SH2 (SM00252)  SH3 (SM00326)  TyrKc (SM00219)  
    Blocks (Seattle)P06239
    PDB (SRS)1BHF    1BHH    1CWD    1CWE    1FBZ    1H92    1IJR    1KIK    1LCJ    1LCK    1LKK    1LKL    1Q68    1Q69    1QPC    1QPD    1QPE    1QPJ    1X27    2IIM    2OF2    2OF4    2OFU    2OFV    2OG8    2PL0    2ZM1    2ZM4    2ZYB    3AC1    3AC2    3AC3    3AC4    3AC5    3AC8    3ACJ    3ACK    3AD4    3AD5    3AD6    3B2W    3BRH    3BYM    3BYO    3BYS    3BYU    3KMM    3KXZ    3LCK    3MPM    4D8K   
    PDB (PDBSum)1BHF    1BHH    1CWD    1CWE    1FBZ    1H92    1IJR    1KIK    1LCJ    1LCK    1LKK    1LKL    1Q68    1Q69    1QPC    1QPD    1QPE    1QPJ    1X27    2IIM    2OF2    2OF4    2OFU    2OFV    2OG8    2PL0    2ZM1    2ZM4    2ZYB    3AC1    3AC2    3AC3    3AC4    3AC5    3AC8    3ACJ    3ACK    3AD4    3AD5    3AD6    3B2W    3BRH    3BYM    3BYO    3BYS    3BYU    3KMM    3KXZ    3LCK    3MPM    4D8K   
    PDB (IMB)1BHF    1BHH    1CWD    1CWE    1FBZ    1H92    1IJR    1KIK    1LCJ    1LCK    1LKK    1LKL    1Q68    1Q69    1QPC    1QPD    1QPE    1QPJ    1X27    2IIM    2OF2    2OF4    2OFU    2OFV    2OG8    2PL0    2ZM1    2ZM4    2ZYB    3AC1    3AC2    3AC3    3AC4    3AC5    3AC8    3ACJ    3ACK    3AD4    3AD5    3AD6    3B2W    3BRH    3BYM    3BYO    3BYS    3BYU    3KMM    3KXZ    3LCK    3MPM    4D8K   
    PDB (RSDB)1BHF    1BHH    1CWD    1CWE    1FBZ    1H92    1IJR    1KIK    1LCJ    1LCK    1LKK    1LKL    1Q68    1Q69    1QPC    1QPD    1QPE    1QPJ    1X27    2IIM    2OF2    2OF4    2OFU    2OFV    2OG8    2PL0    2ZM1    2ZM4    2ZYB    3AC1    3AC2    3AC3    3AC4    3AC5    3AC8    3ACJ    3ACK    3AD4    3AD5    3AD6    3B2W    3BRH    3BYM    3BYO    3BYS    3BYU    3KMM    3KXZ    3LCK    3MPM    4D8K   
    Human Protein AtlasENSG00000182866
    HPRD01080
    IPIIPI00940423   IPI00411413   IPI00515097   IPI01014319   IPI00394952   IPI00985304   IPI00981557   IPI00984672   IPI01008943   IPI00980875   
    Protein Interaction databases
    DIP (DOE-UCLA)P06239
    IntAct (EBI)P06239
    FunCoupENSG00000182866
    REACTOMELCK
    BioGRIDLCK
    InParanoidP06239
    Interologous Interaction database P06239
    Polymorphism : SNP, mutations, diseases
    SNP Single Nucleotide Polymorphism (NCBI)LCK
    SNP (GeneSNP Utah)LCK
    SNP : HGBaseLCK
    Genetic variants : HAPMAPLCK
    Cancer Gene: CensusLCK 
    Somatic Mutations in Cancer : COSMICLCK 
    CONAN: Copy Number AnalysisLCK 
    Translocation Breakpoints in Cancer : TICdbLCK 
    Mutations and Diseases : HGMDLCK
    OMIM153390   
    GENETests153390   
    Disease Genetic AssociationLCK
    Huge Navigator LCK [HugePedia]  LCK [HugeCancerGEM]
    Genomic VariantsLCK
    snp3D : Map Gene to Disease3932
    General knowledge
    Homologs : HomoloGeneLCK
    Homology/Alignments : Family Browser (UCSC)LCK
    Phylogenetic Trees/Animal Genes : TreeFamLCK
    Catalytic activity : Enzyme2.7.10.2 [ Enzyme-Expasy ]   2.7.10.2 [ Enzyme-SRS ]   2.7.10.2 [ IntEnz-EBI ]   2.7.10.2 [ BRENDA ]   2.7.10.2 [ KEGG ]   
    Chemical/Protein Interactions : CTD3932
    Chemical/Pharm GKB GenePA30307
    Clinical trialLCK
    Cancer Resource (Charite)ENSG00000182866
    Ontology : AmiGOnucleotide binding  pericentriolar material  pericentriolar material  glycoprotein binding  antigen binding  protein tyrosine kinase activity  protein tyrosine kinase activity  protein tyrosine kinase activity  protein tyrosine kinase activity  non-membrane spanning protein tyrosine kinase activity  protein serine/threonine phosphatase activity  protein serine/threonine phosphatase activity  protein tyrosine phosphatase activity  protein binding  ATP binding  cytoplasm  Golgi apparatus  cytosol  plasma membrane  protein phosphorylation  cellular zinc ion homeostasis  cellular zinc ion homeostasis  induction of apoptosis  induction of apoptosis  activation of cysteine-type endopeptidase activity involved in apoptotic process  activation of cysteine-type endopeptidase activity involved in apoptotic process  cell surface receptor signaling pathway  aging  blood coagulation  protein C-terminus binding  response to mechanical stimulus  response to zinc ion  viral reproduction  peptidyl-tyrosine phosphorylation  protein kinase binding  hemopoiesis  endocytic vesicle  platelet activation  T cell differentiation  T cell differentiation  T cell costimulation  protein complex binding  peptidyl-tyrosine dephosphorylation  SH2 domain binding  SH2 domain binding  response to drug  response to drug  positive regulation of tyrosine phosphorylation of Stat5 protein  response to hydrogen peroxide  CD4 receptor binding  CD8 receptor binding  phosphatidylinositol 3-kinase binding  interspecies interaction between organisms  membrane raft  membrane raft  positive regulation of gamma-delta T cell differentiation  protein autophosphorylation  regulation of defense response to virus by virus  T cell receptor signaling pathway  B cell receptor signaling pathway  positive regulation of T cell receptor signaling pathway  positive regulation of T cell activation  positive regulation of T cell activation  leukocyte migration  ATPase binding  release of sequestered calcium ion into cytosol  regulation of lymphocyte activation  positive regulation of uterine smooth muscle contraction  
    Ontology : EGO-EBInucleotide binding  pericentriolar material  pericentriolar material  glycoprotein binding  antigen binding  protein tyrosine kinase activity  protein tyrosine kinase activity  protein tyrosine kinase activity  protein tyrosine kinase activity  non-membrane spanning protein tyrosine kinase activity  protein serine/threonine phosphatase activity  protein serine/threonine phosphatase activity  protein tyrosine phosphatase activity  protein binding  ATP binding  cytoplasm  Golgi apparatus  cytosol  plasma membrane  protein phosphorylation  cellular zinc ion homeostasis  cellular zinc ion homeostasis  induction of apoptosis  induction of apoptosis  activation of cysteine-type endopeptidase activity involved in apoptotic process  activation of cysteine-type endopeptidase activity involved in apoptotic process  cell surface receptor signaling pathway  aging  blood coagulation  protein C-terminus binding  response to mechanical stimulus  response to zinc ion  viral reproduction  peptidyl-tyrosine phosphorylation  protein kinase binding  hemopoiesis  endocytic vesicle  platelet activation  T cell differentiation  T cell differentiation  T cell costimulation  protein complex binding  peptidyl-tyrosine dephosphorylation  SH2 domain binding  SH2 domain binding  response to drug  response to drug  positive regulation of tyrosine phosphorylation of Stat5 protein  response to hydrogen peroxide  CD4 receptor binding  CD8 receptor binding  phosphatidylinositol 3-kinase binding  interspecies interaction between organisms  membrane raft  membrane raft  positive regulation of gamma-delta T cell differentiation  protein autophosphorylation  regulation of defense response to virus by virus  T cell receptor signaling pathway  B cell receptor signaling pathway  positive regulation of T cell receptor signaling pathway  positive regulation of T cell activation  positive regulation of T cell activation  leukocyte migration  ATPase binding  release of sequestered calcium ion into cytosol  regulation of lymphocyte activation  positive regulation of uterine smooth muscle contraction  
    Pathways : BIOCARTAThe Co-Stimulatory Signal During T-cell Activation [Genes]    Activation of Csk by cAMP-dependent Protein Kinase Inhibits Signaling through the T Cell Receptor [Genes]    IL 2 signaling pathway [Genes]    T Cell Receptor Signaling Pathway [Genes]    IL-7 Signal Transduction [Genes]    Lck and Fyn tyrosine kinases in initiation of TCR Activation [Genes]   
    Pathways : KEGGT cell receptor signaling pathwayNatural killer cell mediated cytotoxicity
    Other databases
    Probes
    Probes : ImagenesLCK Related clones (RZPD - Berlin)
    Litterature
    PubMed367 Pubmed reference(s) in Entrez
    PubGeneLCK
    iHOPLCK

    Bibliography

    Alterations in the expression of pp60c-src and p56lck associated with butyrate-induced differentiation of human colon carcinoma cells.
    Foss FM, Veillette A, Sartor O, Rosen N, Bolen JB
    Oncogene research. 1989 ; 5 (1) : 13-23.
    PMID 2476706
     
    lck suppresses gene expression from various promoters including human T-cell leukemia virus type I promoter.
    Ohta M, Morita T, Shimotohno K
    Japanese journal of cancer research : Gann. 1990 ; 81 (5) : 440-444.
    PMID 2116390
     
    Activation of the Lck tyrosine protein kinase by hydrogen peroxide requires the phosphorylation of Tyr-394.
    Hardwick JS, Sefton BM
    Proceedings of the National Academy of Sciences of the United States of America. 1995 ; 92 (10) : 4527-4531.
    PMID 7538674
     
    Specific deficiency of p56lck expression in T lymphocytes from type 1 diabetic patients.
    Nervi S, Atlan-Gepner C, Kahn-Perles B, Lecine P, Vialettes B, Imbert J, Naquet P
    Journal of immunology (Baltimore, Md. : 1950). 2000 ; 165 (10) : 5874-5883.
    PMID 11067948
     
    Tyrosine kinase p56lck regulates cell motility and nuclear factor kappaB-mediated secretion of urokinase type plasminogen activator through tyrosine phosphorylation of IkappaBalpha following hypoxia/reoxygenation.
    Mahabeleshwar GH, Kundu GC
    The Journal of biological chemistry. 2003 ; 278 (52) : 52598-52612.
    PMID 14534291
     
    Tyrosine kinase, p56lck-induced cell motility, and urokinase-type plasminogen activator secretion involve activation of epidermal growth factor receptor/extracellular signal regulated kinase pathways.
    Mahabeleshwar GH, Das R, Kundu GC
    The Journal of biological chemistry. 2004 ; 279 (11) : 9733-9742.
    PMID 14699120
     
    Structure and regulation of Src family kinases.
    Boggon TJ, Eck MJ
    Oncogene. 2004 ; 23 (48) : 7918-7927.
    PMID 15489910
     
    Function of the Src-family kinases, Lck and Fyn, in T-cell development and activation.
    Palacios EH, Weiss A
    Oncogene. 2004 ; 23 (48) : 7990-8000.
    PMID 15489916
     
    REVIEW articlesautomatic search in PubMed
    Last year publicationsautomatic search in PubMed

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    Contributor(s)

    Written05-2005Deepak Pralhad Patil, Gopal Chandra Kundu
    CSIR-JRF,c/o Dr. G. C. Kundu, National Center for Cell Science, NCCS Complex, Ganeshkhind, Pune(Maharastra)-411007, India

    Citation

    This paper should be referenced as such :
    Patil DP, Kundu GC . LCK (lymphocyte-specific protein tyrosine kinase). Atlas Genet Cytogenet Oncol Haematol. May 2005 .
    URL : http://AtlasGeneticsOncology.org/Genes/LCKID14ch1p34.html

    This paper is referenced by INIST as such :
    http://documents.irevues.inist.fr/bitstream/2042/38212/1/05-2005-LCKID14ch1p34.pdf   [ Bibliographic record ]

    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Sat Apr 28 15:04:39 CEST 2012

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