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LCP1 (lymphocyte cytosolic protein1)

Identity

Other namesL-Plastine
HGNC (Hugo) LCP1
LocusID (NCBI) 3936
Location 13q14
Location_base_pair Starts at 46700058 and ends at 46756459 bp from pter ( according to hg19-Feb_2009)  [Mapping]

DNA/RNA

Description spans on a 90 kb genomic fragment; 16 exons, large first intron (20kb)
Transcription 3.7 kb mRNA; coding sequence from exon 2 to exon 16: 3500 bp

Protein

Description 570 amino acids
Expression restricted to the hematopoietic cells (leukocytes); expression induced in all tumor cells of all tissues
Localisation membrane
Homology belongs to an actin-binding protein family (T-Plastin, Fimbrin, I-Plastin)

Implicated in

Entity t(3;13)(q27;q14)/ NHL --> LCP1 - BCL6
Disease non Hodgkin follicular as well as Burkitt lymphomas
Cytogenetics t(3;13) is observed as a secondary anomaly
Hybrid/Mutated Gene both 5' L-Plastin- 3' BCL6 and 5' BCL6 - 3' L-Plastin, leading to two fusion transcripts
Abnormal Protein no fusion protein, but promoter exchange between both partner genes
  

External links

Nomenclature
HGNC (Hugo)LCP1   6528
Entrez_Gene (NCBI)LCP1  3936  lymphocyte cytosolic protein 1 (L-plastin)
Cards
AtlasLCP1ID95
GeneCards (Weizmann)LCP1
Ensembl (Hinxton)ENSG00000136167 [Gene_View]  chr13:46700058-46756459 [Contig_View]  LCP1 [Vega]
AceView (NCBI)LCP1
Genatlas (Paris)LCP1
euGene (Indiana)3936
SOURCE (Stanford)NM_002298
Genomic and cartography
GoldenPath (UCSC)LCP1  -  13q14   chr13:46700058-46756459 -  13q14.3   [Description]    (hg19-Feb_2009)
EnsemblLCP1 - 13q14.3 [CytoView]
Mapping of homologs : NCBILCP1 [Mapview]
OMIM153430   
Gene and transcription
Genbank (Entrez)AB208984 AK058152 AK097275 AK129625 AK223305
RefSeq transcript (SRS)NM_002298
RefSeq transcript (Entrez)NM_002298
RefSeq genomic (SRS)AC_000145 NC_000013 NT_024524 NW_001838074
RefSeq genomic (Entrez)AC_000145 NC_000013 NT_024524 NW_001838074
Consensus coding sequences : CCDS (NCBI)LCP1
Cluster EST : UnigeneHs.658408 [ SRS ] Hs.658408 [ NCBI ]
Alternative Splicing : Fast-db (Paris)4887
Alternative Splicing GalleryENSG00000136167
Gene ExpressionLCP1 [ NCBI-GEO ]   LCP1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP13796 (SRS) P13796 (Uniprot)
With graphics : InterProP13796
Splice isoforms : SwissVarP13796(Swissvar)
Domaine pattern : Prosite (SRS)ACTININ_1 (PS00019)    ACTININ_2 (PS00020)    CH (PS50021)    EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domaine pattern : Prosite (Expaxy)ACTININ_1 (PS00019)    ACTININ_2 (PS00020)    CH (PS50021)    EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (SRS)Actinin_actin-bd_CS    CH-domain    EF-hand    EF-hand-like_dom    EF_Hand_1_Ca_BS    EF_HAND_2    EF_hand_Ca-bd   
Domains : Interpro (EBI)Actinin_actin-bd_CS    CH-domain    EF-hand    EF-hand-like_dom    EF_Hand_1_Ca_BS    EF_HAND_2    EF_hand_Ca-bd   
Related proteins : CluSTrP13796
Domain families : Pfam (SRS)CH (PF00307)    efhand (PF00036)   
Domain families : Pfam (Sanger)CH (PF00307)    efhand (PF00036)   
Domain families : Pfam (NCBI)pfam00307    pfam00036   
Domain families : Smart (EMBL)CH (SM00033)  EFh (SM00054)  
Blocks (Seattle)P13796
PDB (SRS)2D85   
PDB (PDBSum)2D85   
PDB (IMB)2D85   
PDB (RSDB)2D85   
Human Protein AtlasENSG00000136167
HPRD01082
IPIIPI00010471   IPI00909658   IPI00921552   IPI00646259   IPI00643270   
dbDEPCIPI00010471   
Protein Interaction databases
DIP (DOE-UCLA)P13796
IntAct (EBI)P13796
FunCoupENSG00000136167
REACTOMELCP1
BioGRIDLCP1
InParanoidP13796
Interologous Interaction database P13796
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)LCP1
SNP (GeneSNP Utah)LCP1
SNP : HGBaseLCP1
Genetic variants : HAPMAPLCP1
Cancer Gene: CensusLCP1 
Somatic Mutations in Cancer : COSMICLCP1 
CONAN: Copy Number AnalysisLCP1 
Translocation Breakpoints in Cancer : TICdbLCP1 
Mutations and Diseases : HGMDLCP1
OMIM153430   
GENETests153430   
Disease Genetic AssociationLCP1
Huge Navigator LCP1 [HugePedia]  LCP1 [HugeCancerGEM]
Genomic VariantsLCP1
snp3D : Map Gene to Disease3936
General knowledge
Homologs : HomoloGeneLCP1
Homology/Alignments : Family Browser (UCSC)LCP1
Phylogenetic Trees/Animal Genes : TreeFamLCP1
Chemical/Protein Interactions : CTD3936
Chemical/Pharm GKB GenePA30312
Clinical trialLCP1
Cancer Resource (Charite)ENSG00000136167
Ontology : AmiGOruffle  phagocytic cup  T cell activation involved in immune response  actin binding  calcium ion binding  calcium ion binding  cytoplasm  cytoplasm  cytosol  actin filament  plasma membrane  actin cytoskeleton  cell junction  organ regeneration  ruffle membrane  regulation of intracellular protein transport  identical protein binding  actin filament binding  actin filament bundle assembly  
Ontology : EGO-EBIruffle  phagocytic cup  T cell activation involved in immune response  actin binding  calcium ion binding  calcium ion binding  cytoplasm  cytoplasm  cytosol  actin filament  plasma membrane  actin cytoskeleton  cell junction  organ regeneration  ruffle membrane  regulation of intracellular protein transport  identical protein binding  actin filament binding  actin filament bundle assembly  
Other databases
Probes
Probes : ImagenesLCP1 Related clones (RZPD - Berlin)
Litterature
PubMed50 Pubmed reference(s) in Entrez
PubGeneLCP1
iHOPLCP1

Bibliography

Molecular cloning and characterization of plastin, a human leukocyte protein expressed in transformed human fibroblasts.
Lin CS, Aebersold RH, Kent SB, Varma M, Leavitt J
Molecular and cellular biology. 1988 ; 8 (11) : 4659-4668.
PMID 3211125
 
Human plastin genes. Comparative gene structure, chromosome location, and differential expression in normal and neoplastic cells.
Lin CS, Park T, Chen ZP, Leavitt J
The Journal of biological chemistry. 1993 ; 268 (4) : 2781-2792.
PMID 8428952
 
Activation of the leukocyte plastin gene occurs in most human cancer cells.
Park T, Chen ZP, Leavitt J
Cancer research. 1994 ; 54 (7) : 1775-1781.
PMID 8137292
 
Interaction of a Dictyostelium member of the plastin/fimbrin family with actin filaments and actin-myosin complexes.
Prassler J, Stocker S, Marriott G, Heidecker M, Kellermann J, Gerisch G
Molecular biology of the cell. 1997 ; 8 (1) : 83-95.
PMID 9017597
 
Cytogenetics in multiple myeloma: a multicenter study of 24 patients with t(11;14)(q13;q32) or its variant.
LaˆØ JL, Michaux L, Dastugue N, Vasseur F, Daudignon A, Facon T, Bauters F, Zandecki M
Cancer genetics and cytogenetics. 1998 ; 104 (2) : 133-138.
PMID 9666807
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written03-1998Sylvie Galiègue-Zouitina
U.124 INSERM, I.R.C.L., Place de Verdun, 59045 LILLE Cedex, France

Citation

This paper should be referenced as such :
Galiègue-Zouitina S . LCP1 (lymphocyte cytosolic protein1). Atlas Genet Cytogenet Oncol Haematol. March 1998 .
URL : http://AtlasGeneticsOncology.org/Genes/LCP1ID95.html

This paper is referenced by INIST as such :
http://documents.irevues.inist.fr/bitstream/2042/37404/1/03-1998-LCP1ID95.pdf   [ Bibliographic record ]

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indexed on : Sat Apr 28 15:03:36 CEST 2012

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