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KITLG (KIT ligand)

Identity

Other namesMGF (Mast Cell Growth Factor)
SCF (Stem Cell factor)
HGNC KITLG
Location 12q22

DNA/RNA

Description Genomic sequence not known; 9 exons (see diagram).
Transcription 1,4 Kb mRNA; alternative splicing gives rise to different transcripts, mainly represented by those for a membrane and a soluble form.

Protein

Description the membrane bound form is a surface molecule of 248 aa, that includes 23 aa of the highly hydrophobic transmembrane domain; the second form corresponds to a soluble protein constituted by the first 165 aa of the extracellular domain released by a posttranslational processing, consisting in a proteolytic cleavage of the mature SCF in the extracellular juxtamembrane region; the full length transcripts encode for a transmembrane precursor of the soluble protein; an alternative splicing that involves the region corresponding to exon 6 of the SCF cDNA, which contains the proteolytic cleavage site, encodes for a surface molecule.
Expression SCF transcripts have been found in the cells surrounding kit-positive cells, such as granulosa and Sertoli cells, bone marrow stromal cells and in fibroblasts, keratinocytes and mature granulocytes; SCF expression of peripheral lymphocytes and monocytes is still controversial.
Localisation plasma membrane or interstitial space
Function SCF/MGF binding of receptor KIT, with tyrosine kinase activity, induces receptor dimerization, autophosphorylation and signal transduction via molecules containing SH2-domains; the soluble and the transmembrane protein have a different biological activity; the soluble form mainly stimulates cellular proliferation; the membrane-bound isoform induces an activation of the receptor more prolonged than the soluble one
Homology with PDGFRb, PDGFRa, and CSF-1.

Mutations

Germinal human mutations are yet unknown in human MGF/SCF gene; mouse mutations at the murine steel (Sl) locus that encodes MGF are known and give rise to deficiencies in pigment cells, germ cells, and blood cells; in particular the steel-Dickie (Sld) mouse has a 4.0-kb intragenic deletion that truncates the Sl coding sequence; Sld mice are only capable of encoding a soluble truncated growth factor that lacks both transmembrane and cytoplasmic domains.

Implicated in

Entity Mastocytosis
Disease In skin from patients with mastocytosis, MGF was found prevalently free in the dermis and in extracellular spaces between keratinocytes suggesting the presence of a soluble form of the protein; altered distribution of mast cell growth factor in the skin of patients with cutaneous mastocytosis is consistent with abnormal production of the soluble form of the factor, resulting by an increased cleavage of SCF with excessive release of a soluble form from the normally membrane bound form; no sequence abnormalities were detected in MGF mRNA.
  
Entity Gynecological tumors
Disease findings obtained on three cervical carcinomas (ovarian serous adenocarcinoma, small cell carcinoma and ovarian immature teratoma) and two gynecological cancer cell lines (ME180 and HGCM) demonstrate coexpression of c-Kit receptor and SCF; these observations are consistent with the possibility that an autocrine activation of SCF/KIT system might be involved in gynecological malignancies.
  
Entity Small-cell lung cancer
Disease SCF is expressed in small-cell lung cancer (SCLC); abundant expression of SCF and c-Kit mRNA was seen in 32% of SCLC cell lines and 66% of SCLC tumors; an autocrine mechanism in the pathogenesis of SCLC is strongly suggested.
  

External links

Nomenclature
HGNCKITLG   6343
Entrez_GeneKITLG  4254  KIT ligand
Cards
AtlasMGFID142
GeneCardsKITLG
EnsemblKITLG [Search_View]   ENSG00000049130 [Gene_View]
GenatlasKITLG
GeneLynxKITLG
eGenomeKITLG
euGene4254
Genomic and cartography
GoldenPathKITLG  -  12q22   chr12:87410698-87498369 -  12q22   [Description]    (hg18-Mar_2006)
EnsemblKITLG - 12q22 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneKITLG
Gene and transcription
GenbankAF119835 [ ENTREZ ]
GenbankAF400436 [ ENTREZ ]
GenbankAF400437 [ ENTREZ ]
GenbankAK025245 [ ENTREZ ]
GenbankAK055903 [ ENTREZ ]
RefSeqNM_000899 [ SRS ]    NM_000899 [ ENTREZ ]
RefSeqNM_003994 [ SRS ]    NM_003994 [ ENTREZ ]
RefSeqAC_000055 [ SRS ]    AC_000055 [ ENTREZ ]
RefSeqAC_000144 [ SRS ]    AC_000144 [ ENTREZ ]
RefSeqNC_000012 [ SRS ]    NC_000012 [ ENTREZ ]
RefSeqNT_019546 [ SRS ]    NT_019546 [ ENTREZ ]
RefSeqNW_001838061 [ SRS ]    NW_001838061 [ ENTREZ ]
RefSeqNW_925395 [ SRS ]    NW_925395 [ ENTREZ ]
AceViewKITLG AceView - NCBI
UnigeneHs.1048 [ SRS ]    Hs.1048 [ NCBI ]     HS1048 [ spliceNest ]
Fast-db11300 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtP21583 [ SRS]    P21583 [ EXPASY ]     P21583 [ INTERPRO ]     P21583 [ UNIPROT ]
InterproIPR012351 4_helix_cytokine_core [ SRS ]    IPR012351 4_helix_cytokine_core [ EBI ]
InterproIPR003452 SCF [ SRS ]    IPR003452 SCF [ EBI ]
CluSTrP21583
PfamPF02404 SCF [ SRS ]    PF02404 SCF [ Sanger ]    pfam02404 [ NCBI-CDD ]
BlocksP21583
PDB1EXZ [ SRS ]    1EXZ [ PdbSum ],   1EXZ [ IMB ]   1EXZ [ RSDB ]
PDB1SCF [ SRS ]    1SCF [ PdbSum ],   1SCF [ IMB ]   1SCF [ RSDB ]
PDB2E9W [ SRS ]    2E9W [ PdbSum ],   2E9W [ IMB ]   2E9W [ RSDB ]
HPRD01698
Protein Interaction databases
DIPP21583
IntActP21583
Polymorphism : SNP, mutations, diseases
OMIM184745;611664    [ map ]   
GENECLINICS184745;611664
SNPKITLG [dbSNP-NCBI]  
SNPNM_000899 [SNP-NCI]  
SNPNM_003994 [SNP-NCI]  
SNPKITLG [GeneSNPs - Utah]  KITLG] [HGBASE - SRS]
HAPMAPKITLG [HAPMAP]  
COSMICKITLG [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDKITLG
General knowledge
Family BrowserKITLG [UCSC Family Browser]
SOURCENM_000899
SOURCENM_003994
SMDHs.1048
SAGEHs.1048
GOstem cell factor receptor binding [Amigo]  stem cell factor receptor binding
GOextracellular region [Amigo]  extracellular region
GOcytoplasm [Amigo]  cytoplasm
GOcytoskeleton [Amigo]  cytoskeleton
GOplasma membrane [Amigo]  plasma membrane
GOcell adhesion [Amigo]  cell adhesion
GOsignal transduction [Amigo]  signal transduction
GOgrowth factor activity [Amigo]  growth factor activity
GOcell proliferation [Amigo]  cell proliferation
GOintegral to membrane [Amigo]  integral to membrane
GOhemopoiesis [Amigo]  hemopoiesis
GOidentical protein binding [Amigo]  identical protein binding
GOpositive regulation of DNA replication [Amigo]  positive regulation of DNA replication
BIOCARTARegulation of BAD phosphorylation    [Genes]
BIOCARTAErythrocyte Differentiation Pathway    [Genes]
BIOCARTAIL 17 Signaling Pathway    [Genes]
BIOCARTACDK Regulation of DNA Replication    [Genes]
BIOCARTAMelanocyte Development and Pigmentation    [Genes]
KEGGCytokine-cytokine receptor interaction
KEGGHematopoietic cell lineage
PubGeneKITLG
TreeFamKITLG
CTD4254 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeKITLG Related clones (RZPD - Berlin)
PubMed
PubMed95 Pubmed reference(s) in LocusLink

Bibliography

Stem cell factor is encoded at the Sl locus of the mouse and is the ligand for the c-kit tyrosine kinase receptor.
Zsebo KM, Williams DA, Geissler EN, Broudy VC, Martin FH, Atkins HL, Hsu RY, Birkett NC, Okino KH, Murdock DC
Cell. 1990 ; 63 (1) : 213-224.
PMID 1698556
 
Primary structure and functional expression of rat and human stem cell factor DNAs.
Martin FH, Suggs SV, Langley KE, Lu HS, Ting J, Okino KH, Morris CF, McNiece IK, Jacobsen FW, Mendiaz EA
Cell. 1990 ; 63 (1) : 203-211.
PMID 2208279
 
[Some data on the state of the hematoencephalic barrier in cerebral cysticercosis.]
ANTONOV IP, SIZONENKO TP
Zhurnal nevropatologii i psikhiatrii imeni S.S. Korsakova (Moscow, Russia : 1952). 1963 ; 63 : 213-216.
PMID 14013385
 
Coexpression of the stem cell factor and the c-kit genes in small-cell lung cancer.
Hibi K, Takahashi T, Sekido Y, Ueda R, Hida T, Ariyoshi Y, Takagi H, Takahashi T
Oncogene. 1991 ; 6 (12) : 2291-2296.
PMID 1722571
 
Altered metabolism of mast-cell growth factor (c-kit ligand) in cutaneous mastocytosis.
Longley BJ Jr, Morganroth GS, Tyrrell L, Ding TG, Anderson DM, Williams DE, Halaban R
The New England journal of medicine. 1993 ; 328 (18) : 1302-1307.
PMID 7682288
 
Expression of interleukins 1, 3, 6, stem cell factor and their receptors in acute leukemia blast cells and in normal peripheral lymphocytes and monocytes.
Ferrari S, Grande A, Manfredini R, Tagliafico E, Zucchini P, Torelli G, Torelli U
European journal of haematology. 1993 ; 50 (3) : 141-148.
PMID 7682516
 
Human peripheral blood granulocytes and myeloid leukemic cell lines express both transcripts encoding for stem cell factor.
Ramenghi U, Ruggieri L, Dianzani I, Rosso C, Brizzi MF, Camaschella C, Pietsch T, Saglio G
Stem cells (Dayton, Ohio). 1994 ; 12 (5) : 521-526.
PMID 7528592
 
Coexpression of the c-kit receptor and the stem cell factor in gynecological tumors.
Inoue M, Kyo S, Fujita M, Enomoto T, Kondoh G
Cancer research. 1994 ; 54 (11) : 3049-3053.
PMID 7514496
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written10-1998Alessandro Beghini
Updated06-2000Lidia Larizza and Alessandro Beghini

Citation

This paper should be referenced as such :
Beghini A . KITLG (KIT ligand). Atlas Genet Cytogenet Oncol Haematol. October 1998 .
URL : http://AtlasGeneticsOncology.org/Genes/MGFID142.html
Larizza L and Beghini A . KITLG (KIT ligand). Atlas Genet Cytogenet Oncol Haematol. June 2000 .
URL : http://AtlasGeneticsOncology.org/Genes/MGFID142.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 11 21:15:17 2008


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