Genomic DNA encoding GATA6 encompasses 33088 bp on the long arm of chromosome 18. The gene is encoded on the plus (forward) strand.

The pre-mRNA comprises 7 exons, one of which is non-coding, and 6 introns. The mouse and human GATA6 genes contain two alternative non-coding upstream exons, transcribed from two distinct promoters (Brewer et al., 1999), similar to other GATA family members. The non-coding exons possess regulatory capability and may act to promote transcription. Two isoforms of GATA6 are expressed from two distinct open reading frames and distinct initiator Met codons as a result of leaky ribosome scanning. There are no apparent differences in the amounts or sites of expression of the two transcripts that result from initiation at different Met codons.

The GATA6 protein products that result from different initiation codons comprise a long isoform of 595 aa (64 kDa) and a short isoform of 449 aa (52 kDa). Both isoforms possess an N-terminal transactivation domain and two zinc finger domains, all of which are essential for activity (Takeda et al., 2004). The two isoforms display different transactivation potential on GATA6-dependent promoters with long GATA6 showing higher activity than short GATA6.

GATA6 is expressed predominantly in tissues of mesodermal and endodermal origin. In early development, high levels are detected in the precardiac mesoderm, embryonic heart tube and primitive gut. As development proceeds GATA6 expression is observed in vascular smooth muscle cells, the developing airways, urogenital ridge and bladder (Morrisey et al., 1996).

Nuclear.

GATA6 binds to a 5-(T/A)GATA(A/G)-3 consensus sequence in the promoters of target genes to regulate their transcription. GATA6 is post-translationallly modified by MEK/Erk-dependent phosphorylation at Ser120 (S266 in long GATA6). Ser120Ala mutation abolished GATA6 DNA-binding activity and GATA6-mediated Nox1 promoter activation, and also suppressed growth of CaCo-2 colon carcinoma cells (Adachi et al., 2008). GATA6 activity is also regulated through interaction with members of the Friend of GATA (FOG) family of proteins. Two FOG proteins have been identified in mice and humans, FOG-1 and FOG-2, and their interaction with GATA factors can promote or inhibit GATA activity, depending on context (Cantor and Orkin, 2005).
GATA6 is essential for normal development, since genetic knockout in mice leads to embryonic lethality as early as E6.5. The underlying defect in GATA6-null mice was determined to be a failure of endoderm differentiation resulting in attenuated expression of GATA6 target genes including GATA4, HNF3beta and HNF4 (Morrisey et al., 1998). GATA6 was shown subsequently to be essential for early extraembryonic development (Koutsourakis et al., 1999). Partial rescue of GATA6-deficient embryos by tetraploid embryo complementation demonstrated additional functions for GATA6 in liver development. The early lethality in GATA6-null embryos could be overcome by providing wild type extraembryonic endoderm and allowed embryos to proceed through gastrulation. However, although hepatic specification occurred normally in rescued GATA6^-/- embryos, normal differentiation did not occur and hepatic development arrested at E10.5 (Zhao et al., 2005).
Early development of other organ systems was unaffected in rescued GATA6-null embryos, including the heart and vasculature. Interestingly, conditional deletion of GATA6 using SM22alpha promoter-driven Cre recombinase led to perinatal lethality as a result of cardiovascular defects emerging later in embryonic development. In that analysis, the underlying mechanism was determined to be diminished expression of the vascular and neuronal guidance molecule semaphorin 3C, a direct target of GATA6 (Lepore et al., 2006). Consistent with GATA6-dependent regulation of Sema3C in mice, mutations in GATA6 were found to cause cardiac outflow tract defects in humans by dysregulating semaphorin-dependent signaling (Kodo et al., 2009). In general, GATA6 does not act alone in regulating developmental processes, but rather achieves its effects through physical and functional interaction with other transcription factors and signaling molecules, including FOG factors, GATA4 (Xin et al., 2006; Zhao et al., 2008), Tbx5 (Maitra et al., 2009), members of the Nkx2 family (Peterkin et al., 2003) and Wnt family proteins. The complexity of these interactions is exemplified by the functional cooperation of Wnt2 and GATA6 in regulating heart development. In this case, GATA6 not only regulates Wnt2 transcription during heart development through direct binding to the Wnt2 promoter (Alexandrovich et al., 2006), but is itself regulated by a Wnt2-dependent mechanism, since GATA6 expression is markedly reduced in Wnt2-null mice (Tian et al., 2010).
GATA6 has also been implicated in regulating development of other organs including the lung and pancreas. In the lung, GATA6 has been shown to regulate specification, differentiation and maturation of the pulmonary epithelium as well as branching morphogenesis (Keijzer et al., 2001; Yang et al., 2002; Liu et al., 2002; Zhang et al., 2008). Inhibition of GATA6 at E6.0 prevented alveolar maturation and also diminished expression of surfactant proteins required for normal pulmonary function. In the pancreas, GATA6 is co-expressed with GATA4 in the epithelium early in development, but as development progresses is expressed only in endocrine cells. Ablation of GATA6 function using a dominant inhibitory engrailed fusion protein strategy led to a reduction or complete loss of pancreatic tissue, consistent with a critical role for GATA6 in pancreatic development (Decker et al., 2006).
GATA6 has also been implicated in postnatal maintenance of the differentiated phenotype in various tissues including bladder smooth muscle (Kanematsu, 2007), gut mucosa (Fang, 2006) and airway epithelium (Zhang, 2008).

GATA6 shares homology with the other 5 GATA factors, all of which are evolutionarily conserved across multiple species. All 6 GATA factors possess two zinc fingers of the Cys-X2-Cys-X17-Cys-X2-Cys configuration. The C-terminal zinc finger mediates high affinity DNA binding and the N-terminal zinc finger stabilizes the interaction with DNA.

None known.

Two mutations in GATA6 were identified in patients with persistent truncus arteriosus, as follows (Kodo et al., 2009).
GATA6-E486del resulted in conversion of P489 to a stop codon, disruption of the nuclear localization signal and truncation of the C-terminus by 100 aa. The encoded protein showed abnormal nuclear localization, no transcriptional activity against atrial natriuretic factor and WNT2 promoters and was dominant negative.
GATA6-N466H contained a point mutation in the C-terminal zinc finger domain. Despite normal nuclear localization, the encoded protein had no transcriptional activity against atrial natriuretic factor and WNT2 promoters.