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BCL2 (B-cell leukemia/lymphoma 2)

Identity

HGNC (Hugo) BCL2
LocusID (NCBI) 596
Location 18q21
Location_base_pair Starts at 60790579 and ends at 60986613 bp from pter ( according to hg19-Feb_2009)  [Mapping]

DNA/RNA

 
  BCL2 (18q21) PAC 248E24 - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics.
Description telomere to centromere orientation; 3 exons; exon 1 and the 3' part of exon 3 are non coding
Transcription 2 alternative transcripts (a and b); 5. 1 kb mRNA; coding sequence: CDS 1459...2178

Protein

Description 25 kDa; 205 amino acids (BCL2b) or 239 amino acids (BCL2a, which has, in addition, a hydrophobic tail for membrane anchorage; this tail seems necessary for anti apoptotic ability); contain homo/heterodimerization domains (BH) and NH domains.
Expression wide; in B and T cells in particular
Localisation mainly in the mitochondrial membrane; other membranes
Function antiapoptosis, through a possibly complex process; dimerization, especially with BAX; role of the BCL2 anti-apoptosis members in forming complexes with caspase-9 and APAF1 (homolog of the nematode CED-4), which prevent them to initiate the protease cascade (through caspase-3 cytochrome C dependent activation and) leading to apoptosis
Homology with Ced9 (nematode C. elegans); with other member of the BCL2 family: 1- apoptosis inhibitors BCLX, MCL1, and 2- apoptosis inducers BAX, BAD, BIK, ...

Implicated in

Entity t(14;18)(q32;q21)/B-cell malignancies --> IgH - BCL2
Disease B- cell NHL mainly; found in 80 to 90 % of follicular lymphomas, 30% of diffuse large cell lymphomas
Prognosis according to the cyto-pathologic subtype (small cleaved cell follicular lymphomas have a good prognosis; large cell lymphomas have a worse prognosis; the t(14;18) may have no prognostic significance)
Cytogenetics complex karyotypes are frequent with +7, del(6q), +12, + X,...
Hybrid/Mutated Gene 5' BCL2 translocated on chromosome 14 near JH (junctions genes of IgH) and C in 3'
Abnormal Protein no fusion protein, but promoter exchange; the immunoglobulin gene enhancer stimulates the expression of BCL2
Oncogenesis as BCL2 is an apoptosis inhibitor, cell death is delayed, and there is cell accumulation (more than real transformation)
  
Entity chronic lymphocytic leukaemia
Oncogenesis BCL2 is hypomethylated in the promotor region, and, therefore, overexpressed
  

Breakpoints

 

External links

Nomenclature
HGNC (Hugo)BCL2   990
Entrez_Gene (NCBI)BCL2  596  B-cell CLL/lymphoma 2
Cards
AtlasBCL2ID49
GeneCards (Weizmann)BCL2
Ensembl (Hinxton)ENSG00000171791 [Gene_View]  chr18:60790579-60986613 [Contig_View]  BCL2 [Vega]
AceView (NCBI)BCL2
Genatlas (Paris)BCL2
euGene (Indiana)596
SOURCE (Stanford)NM_000633 NM_000657
Genomic and cartography
GoldenPath (UCSC)BCL2  -  18q21   chr18:60790579-60986613 -  18q21.33|18q21.3   [Description]    (hg19-Feb_2009)
EnsemblBCL2 - 18q21.33|18q21.3 [CytoView]
Mapping of homologs : NCBIBCL2 [Mapview]
OMIM151430   
Gene and transcription
Genbank (Entrez)AF401211 AI401297 BC027258 DQ891470 DQ894654
RefSeq transcript (SRS)NM_000633 NM_000657
RefSeq transcript (Entrez)NM_000633 NM_000657
RefSeq genomic (SRS)AC_000150 NC_000018 NG_009361 NT_025028 NW_001838469
RefSeq genomic (Entrez)AC_000150 NC_000018 NG_009361 NT_025028 NW_001838469
Consensus coding sequences : CCDS (NCBI)BCL2
Cluster EST : UnigeneHs.150749 [ SRS ] Hs.150749 [ NCBI ]
Alternative Splicing : Fast-db (Paris)5554
Alternative Splicing GalleryENSG00000171791
Gene ExpressionBCL2 [ NCBI-GEO ]   BCL2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP10415 (SRS) P10415 (Uniprot)
With graphics : InterProP10415
Splice isoforms : SwissVarP10415(Swissvar)
Domaine pattern : Prosite (SRS)BCL2_FAMILY (PS50062)    BH1 (PS01080)    BH2 (PS01258)    BH3 (PS01259)    BH4_1 (PS01260)    BH4_2 (PS50063)   
Domaine pattern : Prosite (Expaxy)BCL2_FAMILY (PS50062)    BH1 (PS01080)    BH2 (PS01258)    BH3 (PS01259)    BH4_1 (PS01260)    BH4_2 (PS50063)   
Domains : Interpro (SRS)Apop_reg_Bcl2    Bcl2-like_apoptosis    Bcl2_BH    Bcl2_BH1_motif_CS    Bcl2_BH2_motif_CS    Bcl2_BH3_motif_CS    Bcl2_BH4    Bcl2_BH4_motif_CS    Bcl2_reg   
Domains : Interpro (EBI)Apop_reg_Bcl2    Bcl2-like_apoptosis    Bcl2_BH    Bcl2_BH1_motif_CS    Bcl2_BH2_motif_CS    Bcl2_BH3_motif_CS    Bcl2_BH4    Bcl2_BH4_motif_CS    Bcl2_reg   
Related proteins : CluSTrP10415
Domain families : Pfam (SRS)Bcl-2 (PF00452)    BH4 (PF02180)   
Domain families : Pfam (Sanger)Bcl-2 (PF00452)    BH4 (PF02180)   
Domain families : Pfam (NCBI)pfam00452    pfam02180   
Domain families : Smart (EMBL)BCL (SM00337)  BH4 (SM00265)  
Blocks (Seattle)P10415
PDB (SRS)1G5M    1GJH    1YSW    2O21    2O22    2O2F    2W3L    2XA0   
PDB (PDBSum)1G5M    1GJH    1YSW    2O21    2O22    2O2F    2W3L    2XA0   
PDB (IMB)1G5M    1GJH    1YSW    2O21    2O22    2O2F    2W3L    2XA0   
PDB (RSDB)1G5M    1GJH    1YSW    2O21    2O22    2O2F    2W3L    2XA0   
Human Protein AtlasENSG00000171791
HPRD01045
IPIIPI00020961   IPI00217817   
Protein Interaction databases
DIP (DOE-UCLA)P10415
IntAct (EBI)P10415
FunCoupENSG00000171791
REACTOMEBCL2
BioGRIDBCL2
InParanoidP10415
Interologous Interaction database P10415
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)BCL2
SNP (GeneSNP Utah)BCL2
SNP : HGBaseBCL2
Genetic variants : HAPMAPBCL2
Cancer Gene: CensusBCL2 
Somatic Mutations in Cancer : COSMICBCL2 
CONAN: Copy Number AnalysisBCL2 
Translocation Breakpoints in Cancer : TICdbBCL2 
Mutations and Diseases : HGMDBCL2
OMIM151430   
GENETests151430   
Disease Genetic AssociationBCL2
Huge Navigator BCL2 [HugePedia]  BCL2 [HugeCancerGEM]
Genomic VariantsBCL2
snp3D : Map Gene to Disease596
General knowledge
Homologs : HomoloGeneBCL2
Homology/Alignments : Family Browser (UCSC)BCL2
Phylogenetic Trees/Animal Genes : TreeFamBCL2
Chemical/Protein Interactions : CTD596
Chemical/Pharm GKB GenePA25302
Clinical trialBCL2
Cancer Resource (Charite)ENSG00000171791
Ontology : AmiGOG1/S transition of mitotic cell cycle  protein polyubiquitination  cell morphogenesis  ovarian follicle development  metanephros development  ureteric bud development  branching involved in ureteric bud morphogenesis  behavioral fear response  response to hypoxia  B cell homeostasis  release of cytochrome c from mitochondria  release of cytochrome c from mitochondria  regulation of cell-matrix adhesion  protease binding  lymphoid progenitor cell differentiation  B cell lineage commitment  T cell lineage commitment  immune system development  renal system process  protein binding  intracellular  membrane fraction  nucleus  cytoplasm  mitochondrion  mitochondrial outer membrane  mitochondrial outer membrane  endoplasmic reticulum  endoplasmic reticulum membrane  microsome  cytosol  protein dephosphorylation  melanin metabolic process  regulation of nitrogen utilization  apoptotic process  anti-apoptosis  humoral immune response  response to DNA damage stimulus  response to oxidative stress  actin filament organization  brain development  female pregnancy  cell aging  response to nutrient  transcription factor binding  cell death  male gonad development  induction of apoptosis by intracellular signals  activation of pro-apoptotic gene products  response to radiation  response to heat  response to external stimulus  response to toxin  post-embryonic development  organ morphogenesis  response to inorganic substance  response to iron ion  response to aluminum ion  response to UV-B  response to gamma radiation  regulation of gene expression  negative regulation of calcium ion transport into cytosol  regulation of glycoprotein biosynthetic process  mesenchymal cell development  positive regulation of neuron maturation  positive regulation of smooth muscle cell migration  channel activity  membrane  cell-cell adhesion  peptidyl-threonine phosphorylation  cochlear nucleus development  gland morphogenesis  regulation of transmembrane transporter activity  hemopoiesis  negative regulation of ossification  positive regulation of cell growth  negative regulation of cell growth  negative regulation of cell migration  positive regulation of B cell proliferation  response to caffeine  axon regeneration  ubiquitin protein ligase binding  regulation of protein stability  nuclear membrane  endoplasmic reticulum calcium ion homeostasis  glomerulus development  negative regulation of cellular pH reduction  response to insulin stimulus  regulation of protein localization  negative regulation of myeloid cell apoptosis  T cell differentiation in thymus  positive regulation of peptidyl-serine phosphorylation  response to L-ascorbic acid  negative regulation of osteoblast proliferation  response to cytokine stimulus  glial cell apoptosis  response to nicotine  organ growth  nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway  positive regulation of multicellular organism growth  B cell proliferation  response to drug  response to drug  response to hydrogen peroxide  identical protein binding  protein homodimerization activity  T cell homeostasis  negative regulation of apoptotic process  negative regulation of apoptotic process  positive regulation of catalytic activity  myelin sheath  CD8-positive, alpha-beta T cell lineage commitment  regulation of protein homodimerization activity  regulation of protein heterodimerization activity  negative regulation of neuron apoptosis  sequence-specific DNA binding  ear development  response to estrogen stimulus  innate immune response  response to ethanol  positive regulation of melanocyte differentiation  negative regulation of mitotic cell cycle  negative regulation of retinal cell programmed cell death  response to copper ion  regulation of mitochondrial membrane permeability  pore complex  protein heterodimerization activity  focal adhesion assembly  positive regulation of developmental pigmentation  spleen development  thymus development  digestive tract morphogenesis  developmental growth  oocyte development  oligodendrocyte differentiation  positive regulation of skeletal muscle fiber development  pigment granule organization  homeostasis of number of cells within a tissue  B cell receptor signaling pathway  neuron apoptosis  response to corticosterone stimulus  BH3 domain binding  response to folic acid  defense response to virus  protein phosphatase 2A binding  regulation of cell cycle  regulation of mitochondrial membrane potential  negative regulation of mitochondrial depolarization  regulation of calcium ion transport  apoptosis in response to endoplasmic reticulum stress  reactive oxygen species metabolic process  negative regulation of apoptotic signaling pathway  
Ontology : EGO-EBIG1/S transition of mitotic cell cycle  protein polyubiquitination  cell morphogenesis  ovarian follicle development  metanephros development  ureteric bud development  branching involved in ureteric bud morphogenesis  behavioral fear response  response to hypoxia  B cell homeostasis  release of cytochrome c from mitochondria  release of cytochrome c from mitochondria  regulation of cell-matrix adhesion  protease binding  lymphoid progenitor cell differentiation  B cell lineage commitment  T cell lineage commitment  immune system development  renal system process  protein binding  intracellular  membrane fraction  nucleus  cytoplasm  mitochondrion  mitochondrial outer membrane  mitochondrial outer membrane  endoplasmic reticulum  endoplasmic reticulum membrane  microsome  cytosol  protein dephosphorylation  melanin metabolic process  regulation of nitrogen utilization  apoptotic process  anti-apoptosis  humoral immune response  response to DNA damage stimulus  response to oxidative stress  actin filament organization  brain development  female pregnancy  cell aging  response to nutrient  transcription factor binding  cell death  male gonad development  induction of apoptosis by intracellular signals  activation of pro-apoptotic gene products  response to radiation  response to heat  response to external stimulus  response to toxin  post-embryonic development  organ morphogenesis  response to inorganic substance  response to iron ion  response to aluminum ion  response to UV-B  response to gamma radiation  regulation of gene expression  negative regulation of calcium ion transport into cytosol  regulation of glycoprotein biosynthetic process  mesenchymal cell development  positive regulation of neuron maturation  positive regulation of smooth muscle cell migration  channel activity  membrane  cell-cell adhesion  peptidyl-threonine phosphorylation  cochlear nucleus development  gland morphogenesis  regulation of transmembrane transporter activity  hemopoiesis  negative regulation of ossification  positive regulation of cell growth  negative regulation of cell growth  negative regulation of cell migration  positive regulation of B cell proliferation  response to caffeine  axon regeneration  ubiquitin protein ligase binding  regulation of protein stability  nuclear membrane  endoplasmic reticulum calcium ion homeostasis  glomerulus development  negative regulation of cellular pH reduction  response to insulin stimulus  regulation of protein localization  negative regulation of myeloid cell apoptosis  T cell differentiation in thymus  positive regulation of peptidyl-serine phosphorylation  response to L-ascorbic acid  negative regulation of osteoblast proliferation  response to cytokine stimulus  glial cell apoptosis  response to nicotine  organ growth  nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway  positive regulation of multicellular organism growth  B cell proliferation  response to drug  response to drug  response to hydrogen peroxide  identical protein binding  protein homodimerization activity  T cell homeostasis  negative regulation of apoptotic process  negative regulation of apoptotic process  positive regulation of catalytic activity  myelin sheath  CD8-positive, alpha-beta T cell lineage commitment  regulation of protein homodimerization activity  regulation of protein heterodimerization activity  negative regulation of neuron apoptosis  sequence-specific DNA binding  ear development  response to estrogen stimulus  innate immune response  response to ethanol  positive regulation of melanocyte differentiation  negative regulation of mitotic cell cycle  negative regulation of retinal cell programmed cell death  response to copper ion  regulation of mitochondrial membrane permeability  pore complex  protein heterodimerization activity  focal adhesion assembly  positive regulation of developmental pigmentation  spleen development  thymus development  digestive tract morphogenesis  developmental growth  oocyte development  oligodendrocyte differentiation  positive regulation of skeletal muscle fiber development  pigment granule organization  homeostasis of number of cells within a tissue  B cell receptor signaling pathway  neuron apoptosis  response to corticosterone stimulus  BH3 domain binding  response to folic acid  defense response to virus  protein phosphatase 2A binding  regulation of cell cycle  regulation of mitochondrial membrane potential  negative regulation of mitochondrial depolarization  regulation of calcium ion transport  apoptosis in response to endoplasmic reticulum stress  reactive oxygen species metabolic process  negative regulation of apoptotic signaling pathway  
Pathways : BIOCARTACeramide Signaling Pathway [Genes]    IL-7 Signal Transduction [Genes]    Induction of apoptosis through DR3 and DR4/5 Death Receptors [Genes]    Melanocyte Development and Pigmentation [Genes]    Apoptotic Signaling in Response to DNA Damage [Genes]    IL-2 Receptor Beta Chain in T cell Activation [Genes]    Keratinocyte Differentiation [Genes]    Telomeres, Telomerase, Cellular Aging, and Immortality [Genes]    Role of Mitochondria in Apoptotic Signaling [Genes]    Prion Pathway [Genes]    Regulation of BAD phosphorylation [Genes]    p53 Signaling Pathway [Genes]    Stress Induction of HSP Regulation [Genes]    HIV-I Nef: negative effector of Fas and TNF [Genes]   
Pathways : KEGGNeurodegenerative DisordersFocal adhesionApoptosisPrion diseaseAmyotrophic lateral sclerosis (ALS)Colorectal cancer
Other databases
Probes
ProbeBCL2 (18q21) in normal cells (Bari)
Probes : ImagenesBCL2 Related clones (RZPD - Berlin)
Litterature
PubMed499 Pubmed reference(s) in Entrez
PubGeneBCL2
iHOPBCL2

Bibliography

Cloning the chromosomal breakpoint of t(14;18) human lymphomas: clustering around JH on chromosome 14 and near a transcriptional unit on 18.
Bakhshi A, Jensen JP, Goldman P, Wright JJ, McBride OW, Epstein AL, Korsmeyer SJ
Cell. 1985 ; 41 (3) : 899-906.
PMID 3924412
 
Nucleotide sequence of a t(14;18) chromosomal breakpoint in follicular lymphoma and demonstration of a breakpoint-cluster region near a transcriptionally active locus on chromosome 18.
Cleary ML, Sklar J
Proceedings of the National Academy of Sciences of the United States of America. 1985 ; 82 (21) : 7439-7443.
PMID 2865728
 
Bcl-2 heterodimerizes in vivo with a conserved homolog, Bax, that accelerates programmed cell death.
Oltvai ZN, Milliman CL, Korsmeyer SJ
Cell. 1993 ; 74 (4) : 609-619.
PMID 8358790
 
Structure, function, and regulation of human cAMP-dependent protein kinases.
Taskˆ©n K, Skˆ€lhegg BS, Taskˆ©n KA, Solberg R, Knutsen HK, Levy FO, Sandberg M, Orstavik S, Larsen T, Johansen AK, Vang T, Schrader HP, Reinton NT, Torgersen KM, Hansson V, Jahnsen T
Advances in second messenger and phosphoprotein research. 1997 ; 31 : 191-204.
PMID 9344252
 
Bcl-XL interacts with Apaf-1 and inhibits Apaf-1-dependent caspase-9 activation.
Hu Y, Benedict MA, Wu D, Inohara N, Nˆ†ˆ±ez G
Proceedings of the National Academy of Sciences of the United States of America. 1998 ; 95 (8) : 4386-4391.
PMID 9539746
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written05-1998Jean-Loup Huret

Citation

This paper should be referenced as such :
Huret JL . BCL2 (B-cell leukemia/lymphoma 2). Atlas Genet Cytogenet Oncol Haematol. May 1998 .
URL : http://AtlasGeneticsOncology.org/Genes/BCL2ID49.html

This paper is referenced by INIST as such :
http://documents.irevues.inist.fr/bitstream/2042/37449/1/05-1998-BCL2ID49.pdf   [ Bibliographic record ]

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indexed on : Sat Apr 28 15:07:39 CEST 2012

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