RAN (RAN, member RAS oncogene family)
2009-11-01 Wilhelmina Maria Rensen  , Patrizia Lavia   AffiliationInstitute of Molecular Biology, Pathology, CNR (National Research Council), c\\\/o Sapienza University of Rome, via degli Apuli 4, 00185 Rome, Italy
Identity
DNA/RNA

Description
Transcription
Proteins
Description
Expression
Localisation
In mitosis, the RCC1 exchange factor remains largely chromosome-associated and continues to generate RANGTP. Given that the nuclear envelope has dissolved by this point, this determines a high RANGTP concentration near mitotic chromosomes, where RCC1 is anchored, gradually diluting towards the cell periphery. Some authors have defined this pattern the chromatin-centered gradient diffusion model (Caudron et al., 2005; Kaláb et al., 2006; Li et al., 2007). Highly mobile RANGTP generated at chromosomes, however, does not simply diffuse freely. Fractions of RANGTP can in fact associate with specific effectors at various sites in the mitotic apparatus (e.g. centrosomes, spindle poles and spindle microtubules); the local accumulation of RANGTP at these sites regulates a variety of downstream mitotic factors therein (Quimby and Dasso, 2003; Ciciarello et al., 2007; Clarke and Zhang, 2008).
Function
The ability of the RAN GTPase to shuttle between the nucleus and the cytoplasm parallels its function as a regulator of nucleo-cytoplasmic transport of RNAs and proteins in interphase cells (Izaurralde et al., 1997). This is a highly conserved process from lower eukaryotes to humans. A wealth of studies over more than years have elucidated structural, biochemical and cellular aspects of the process, which cannot be summarised here but are discussed in many reviews (e.g. Mattaj and Englmeier, 1998; Görlich and Kutay, 1999; Clarke and Zhang, 2001; Macara, 2001; Kuersten et al., 2001; Weis, 2003; Pemberton and Paschal, 2005). The role of RAN in the process can be tentatively schematised as follows.
- GDP-bound RAN enters the nucleus associated with a specific transport factor, NTF2 (nuclear transport factor 2). In the nucleus, the RCC1 guanine exchange factor exchanges GDP with GTP on RAN; this generates RANGTP.
- In the nucleus, RANGTP can bind several effectors that contain RAN-binding domains. An important group of RAN nuclear effectors makes up the importin beta superfamily of nuclear transport receptors, which includes exportin/CRM1, importin beta and others.
- Among RANGTP effectors, importin beta is the universal vector of protein import in nuclei and forms import complexes with various cargo proteins. The latter are often, but not obligatorily, characterised by nuclear localisation signal, NLS (short stretches of negatively charged aminoacids). Nuclear cargoes may bind importin beta directly or through a member of the importin alpha proteins, which can act as adaptor molecules for NLSs with subtle sequence preference. Importin beta drives the import complex from the cytoplasm to the nucleus through nuclear pores.
- Upon entry of the import complex in nuclei, RCC1-generated RANGTP binds importin beta. This interaction disassembles the import complex and triggers the release of free cargo proteins in the nucleus. RANGTP therefore acts as an essential regulator in termination of protein import in nuclei and it is absolutely required for the release of nuclear proteins in a free, biologically productive state.
- Export vectors (CRM1, exportin-5 and others) also contain RAN-binding domains with which RANGTP can interact. Export vectors in the nucleus associate with distinct classes of RNAs or with proteins that have to be exported to the cytoplasm. For example, exportin-5 is specific for microRNAs that, after processing from double-stranded RNA precursors, are exported to the cytoplasm in order to regulate gene expression post-transcriptionally. CRM1 is the export vector for many shuttling proteins, e.g. p53, which perform distinct functions in the nucleus and in the cytoplasm; proteins to be exported via CRM1 are characterised by nuclear export signals (NES), short stretches of hydrophobic residues. All export complexes, whether RNA-based or protein-based, require RANGTP for their stabilisation. In other words, the exportin(s) recognise their specific cargos but the assembly of a functional export complex requires RANGTP association and formation of a trimeric RANGTP/exportin/cargo complex. Nuclear RANGTP is therefore a limiting factor in the process of nuclear export.
- The concentration of RANGTP in the nucleus is therefore essential for nucleo-cytoplasmic transport of macromolecules across the nuclear envelope, and ultimately for their proper localisation in the subcellular compartment in which they will function.
- After disassembly of the import complexes in the nucleus, and release of cargoes in the nucleoplasm, RANGTP can exit the nucleus in complex with its effector importin beta.
- The cytoplasm contains the hydrolysis factor RANGAP1 and its co-activator RANBP1, which together cooperate to hydrolyse GTP to GDP on RAN. Cytoplasmic RAN therefore returns GDP-bound and is ready to associate with NTF2 and initiate a novel transport cycle.
Mitotic spindle regulation
In mitosis the nuclear envelope breaks down and the nucleus and cytoplasmic compartments merge. At this stage, RAN takes on a second role as a global regulator of the mitotic apparatus. A large number of studies describe mitotic phenotypes associated with an imbalance in the RAN cycle, indicating that multiple steps of the mitotic division are under RAN control. Here it would not be possible to summarise all relevant studies, but many reviews address possible mechanisms of RAN in mitotic control and converge in identifying RAN as a master regulator of mitosis (Clarke and Zhang, 2008; Kalab and Heald, 2008; Ciciarello et al., 2007; Arnaoutov and Dasso, 2005; Di Fiore et al., 2004; Weis, 2003; Hetzer et al., 2002; Moore, 2001). Relevant aspects are highlighted below.
- Centrosome function. A fraction of RAN localizes at centrosomes through the anchoring protein AKAP450, a large coil-coiled scaffolding protein that tethers several factors to the centrosomes; RAN displacement from centrosomes, induced by expressing a dominant negative mutant of the anchoring protein AKAP450, prevents the formation of centrosomal microtubule asters (Keryer et al., 2003). RAN is also indirectly involved in control of centrosome duplication because it cooperates with CRM1 in regulating the centrosomal recruitment of the centrosome duplication licensing factor nucleophosmin (NPM) (Wang et al., 2005). Interestingly, some viral proteins that cause abnormal centrosome organisation and/or duplication, e.g. HLTV-1 Tax (Peloponese et al., 2005) and HPV E7 (De Luca et al., 2003), interact with the centrosomal RAN fraction and disrupt the centrosomal regulatory functions of RAN (Lavia et al., 2003).
- Mitotic spindle assembly and function. RAN is indispensable for the organisation and dynamic functions of microtubules in the mitotic spindle (Ohba et al., 1999; Carazo-Salas et al., 1999; Wilde and Zheng, 1999; Kalab et al., 1999; Zhang et al., 2009). RAN regulates the organisation of mitotic microtubules, both from centrosomes, in what is regarded as the most classical microtubule nucleation pathway, and from kinetochores (Tulu et al., 2006; Torosantucci et al., 2008; OConnell et al., 2009); the latter is regarded as an alternative pathway that is activated when the centrosomal activity is impaired, for example by mutation in centrosomal factors, or when microtubule nucleation is reactivated after treatment with microtubule-targeting drugs (OConnell and Khodjakov, 2007). A variety of mitotic factors are targets of RAN control and mediate the spindle-organising role of RAN (Clarke and Zhang, 2008; Kalab and Heald, 2008; Ciciarello et al., 2007). Mutations, or silencing, of regulators of the nucleotide-bound state of RAN imbalance the RAN cycle and result in a variety of mitotic abnormalities; recurrent elements include: a) the failure to establish a bipolar spindle, with the formation of multipolar spindles that drive unequal chromosome segregation to more than one pole; b) chromosome misalignment at the cell equator; c) altered microtubule dynamics, eventually resulting in chromosome segregation errors. All of these conditions ultimately contribute to the loss of fidelity in chromosome segregation.
- Microtubule/kinetochore interactions and spindle checkpoint function (Arnaoutov and Dasso, 2005). Imbalance in the RAN cycle is associated with abnormal attachments between microtubules and the kinetochores of chromosomes, with an ensuing failure of chromosome biorientation; cells carrying such imbalance often progress to segregate chromosomes in the presence of incomplete or incorrect microtubule attachments to kinetochores, suggesting that the microtubule defects go undetected by the mitotic spindle checkpoint. RAN mechanisms in the process are not fully understood, but it has been observed that the nucleoporin RANBP2/NUP358, a RAN-binding protein that is endowed with E3 SUMO ligase activity, as well as RANGAP1, the hydrolysis factor for RAN, which is a substrate of SUMOylation by RANBP2/NUP358, must both be recruited at kinetochores in a RANGTP-dependent manner in order to control the spindle checkpoint schedule in response to microtubule attachments to kinetochores (Joseph et al., 2002; Joseph et al., 2004; Salina et al., 2003; Arnaoutov et al., 2005; Zuccolo et al., 2007).
Nuclear envelope organisation and nuclear pore assembly
When mitosis terminates, RAN has roles in the organisation of the nuclear envelope and nuclear pores in the reforming interphase nucleus. The requirement for RAN in the process is indicated by experiments with in vitro cell-free reconstitution systems, as well as in genetic experiments in yeast and in C.elegans in vivo (reviewed by Clarke and Zhang, 2001; Hetzer et al., 2002). Some of these experiments, in particular with yeast mutants, also indicates a requirement for RAN activity in initiation of nuclear pore formation, without which the nuclear envelope precursors would fuse in a sealed envelope incapable of supporting nucleo-cytoplasmic transport. In human cells, some RAN enrichment is seen at the nuclear envelope with a punctuate pattern coinciding with nuclear pores; this reflects the accumulation of a fraction of RAN therein, possibly through interactions with the nucleoporin RANBP2/NUP358, which contains four Ran-binding domains.
Apoptosis
A role of RAN in regulating the apoptotic response to a variety of stimuli is increasingly being recognized (Woo et al., 2008; Tietze et al., 2008; Wong et al., 2009). RAN function in apoptosis is just emerging and is therefore incompletely understood as yet. Available studies implicate RAN in at least two major apoptotic pathways.
- The first pathway, triggered by DNA damage, involves the delocalisation of RAN network members from the nucleus and entails a key role of RCC1 as a sensor of apoptotic modification in chromatin; one downstream factor that the RAN system targts in this response is NF-kB (Wong et al., 2009).
- The second pathway is triggered by microtubule-emanating signals. RAN network members have roles in microtubule dynamics and interplay with many factors that can increase, or decrease, mitotic microtubule stability, hence inducing abnormal mitotic delay. RAN and its regulators can trigger the apoptotic response via microtubules and can modulate apoptosis induction by microtubule-targeting chemotherapeutic agents. The underlying molecular pathway seems to be independent on p53 but dependent on caspases (Woo et al., 2008; Rensen et al., 2009).
Summary
RAN regulates:
- the subcellular localisation of nuclear and cytoplasmic macromolecules in interphase,
- the organisation and function of the mitotic apparatus after nuclear envelope breakdown, and
- the reorganisation of the nuclear envelope after mitosis,
- the apoptotic response to a variety of conditions.
RAN roles in these basic processes underlie the requirement for RAN function for cell viability and duplication and account for the abnormal proliferation and genetic instability observed in cells with RAN deregulated activity.
To be noted
In addition to classical RAN-dependent functions described above, a recent work highlights a novel interactions of RAN with RASSF1, a tumor suppressor protein sharing similarities with RAS effector proteins (Dallol et al., 2009). RASSF1 regulates apoptosis and loss of RASSF1 is common in a variety of human cancers.
Homology
Mutations
Note
Implicated in
Article Bibliography
| Pubmed ID | Last Year | Title | Authors |
|---|---|---|---|
| 18241036 | 2008 | High expression of Ran GTPase is associated with local invasion and metastasis of human clear cell renal cell carcinoma. | Abe H et al |
| 16082212 | 2005 | Ran-GTP regulates kinetochore attachment in somatic cells. | Arnaoutov A et al |
| 15475460 | 2004 | Ran, a small GTPase gene, encodes cytotoxic T lymphocyte (CTL) epitopes capable of inducing HLA-A33-restricted and tumor-reactive CTLs in cancer patients. | Azuma K et al |
| 14973550 | 2004 | Gene expression profiling of colon cancer by DNA microarrays and correlation with histoclinical parameters. | Bertucci F et al |
| 7882974 | 1995 | Co-activation of RanGTPase and inhibition of GTP dissociation by Ran-GTP binding protein RanBP1. | Bischoff FR et al |
| 10408446 | 1999 | Generation of GTP-bound Ran by RCC1 is required for chromatin-induced mitotic spindle formation. | Carazo-Salas RE et al |
| 16123300 | 2005 | Spatial coordination of spindle assembly by chromosome-mediated signaling gradients. | Caudron M et al |
| 17483873 | 2007 | Spatial control of mitosis by the GTPase Ran. | Ciciarello M et al |
| 18478030 | 2008 | Spatial and temporal coordination of mitosis by Ran GTPase. | Clarke PR et al |
| 19559616 | 2009 | RAN GTPase is a RASSF1A effector involved in controlling microtubule organization. | Dallol A et al |
| 12649209 | 2003 | E1A deregulates the centrosome cycle in a Ran GTPase-dependent manner. | De Luca A et al |
| 14726649 | 2004 | Mitotic functions of the Ran GTPase network: the importance of being in the right place at the right time. | Di Fiore B et al |
| 2108320 | 1990 | Characterization of four novel ras-like genes expressed in a human teratocarcinoma cell line. | Drivas GT et al |
| 16647105 | 2006 | Identification of chromosomal alterations important in the development of cervical intraepithelial neoplasia and invasive carcinoma using alignment of DNA microarray data. | Fitzpatrick MA et al |
| 10611974 | 1999 | Transport between the cell nucleus and the cytoplasm. | Görlich D et al |
| 18565325 | 2008 | ARA24/Ran enhances the androgen-dependent NH2- and COOH-terminal interaction of the androgen receptor. | Harada N et al |
| 15561686 | 2004 | Multiple myeloma. | Harousseau JL et al |
| 18606985 | 2008 | Five-gene model to predict survival in mantle-cell lymphoma using frozen or formalin-fixed, paraffin-embedded tissue. | Hartmann E et al |
| 12105431 | 2002 | The Ran GTPase as a marker of chromosome position in spindle formation and nuclear envelope assembly. | Hetzer M et al |
| 10400640 | 1999 | The linkage of Kennedy's neuron disease to ARA24, the first identified androgen receptor polyglutamine region-associated coactivator. | Hsiao PW et al |
| 19240248 | 2009 | Comprehensive proteome analysis of an Apc mouse model uncovers proteins associated with intestinal tumorigenesis. | Hung KE et al |
| 9351834 | 1997 | The asymmetric distribution of the constituents of the Ran system is essential for transport into and out of the nucleus. | Izaurralde E et al |
| 15062103 | 2004 | The RanGAP1-RanBP2 complex is essential for microtubule-kinetochore interactions in vivo. | Joseph J et al |
| 11854305 | 2002 | SUMO-1 targets RanGAP1 to kinetochores and mitotic spindles. | Joseph J et al |
| 18469014 | 2008 | The RanGTP gradient - a GPS for the mitotic spindle. | Kalab P et al |
| 16572176 | 2006 | Analysis of a RanGTP-regulated gradient in mitotic somatic cells. | Kaláb P et al |
| 10322113 | 1999 | The ran GTPase regulates mitotic spindle assembly. | Kalab P et al |
| 14517334 | 2003 | Part of Ran is associated with AKAP450 at the centrosome: involvement in microtubule-organizing activity. | Keryer G et al |
| 11719056 | 2001 | Nucleocytoplasmic transport: Ran, beta and beyond. | Kuersten S et al |
| 19192273 | 2009 | Identification of genes differentially expressed between benign and osteopontin transformed rat mammary epithelial cells. | Kurisetty VV et al |
| 14528275 | 2003 | Emerging roles of DNA tumor viruses in cell proliferation: new insights into genomic instability. | Lavia P et al |
| 17151784 | 2006 | Identification of genes related to nasopharyngeal carcinoma with the help of pathway-based networks. | Li H et al |
| 17671426 | 2007 | Coordination of chromosome alignment and mitotic progression by the chromosome-based Ran signal. | Li HY et al |
| 12368219 | 2002 | Heterogeneous expression and functions of androgen receptor co-factors in primary prostate cancer. | Li P et al |
| 12037668 | 2002 | Molecular diagnosis of colorectal tumors by expression profiles of 50 genes expressed differentially in adenomas and carcinomas. | Lin YM et al |
| 11729264 | 2001 | Transport into and out of the nucleus. | Macara IG et al |
| 9759490 | 1998 | Nucleocytoplasmic transport: the soluble phase. | Mattaj IW et al |
| 11135312 | 2001 | The Ran-GTPase and cell-cycle control. | Moore JD et al |
| 19805628 | 2009 | Relative contributions of chromatin and kinetochores to mitotic spindle assembly. | O'Connell CB et al |
| 10334990 | 1999 | Self-organization of microtubule asters induced in Xenopus egg extracts by GTP-bound Ran. | Ohba T et al |
| 16572426 | 2006 | Tissue array analysis of expression microarray candidates identifies markers associated with tumor grade and outcome in serous epithelial ovarian cancer. | Ouellet V et al |
| 16365316 | 2005 | Abnormal centrosome amplification in cells through the targeting of Ran-binding protein-1 by the human T cell leukemia virus type-1 Tax oncoprotein. | Peloponese JM Jr et al |
| 15702987 | 2005 | Mechanisms of receptor-mediated nuclear import and nuclear export. | Pemberton LF et al |
| 12787777 | 2003 | The small GTPase Ran: interpreting the signs. | Quimby BB et al |
| 18508502 | 2008 | The GTPase Ran: regulation of cell life and potential roles in cell transformation. | Rensen WM et al |
| 19270727 | 2009 | RanBP1 downregulation sensitizes cancer cells to taxol in a caspase-3-dependent manner. | Rensen WM et al |
| 19380173 | 2010 | Malignant pleural mesothelioma: genome-wide expression patterns reflecting general resistance mechanisms and a proposal of novel targets. | Røe OD et al |
| 12963708 | 2003 | Nup358 integrates nuclear envelope breakdown with kinetochore assembly. | Salina D et al |
| 11799242 | 2002 | Systems analysis of Ran transport. | Smith AE et al |
| 18637733 | 2008 | Induction of apoptosis in murine neuroblastoma by systemic delivery of transferrin-shielded siRNA polyplexes for downregulation of Ran. | Tietze N et al |
| 18287525 | 2008 | Localized RanGTP accumulation promotes microtubule nucleation at kinetochores in somatic mammalian cells. | Torosantucci L et al |
| 16527751 | 2006 | Molecular requirements for kinetochore-associated microtubule formation in mammalian cells. | Tulu US et al |
| 16041368 | 2005 | Temporal and spatial control of nucleophosmin by the Ran-Crm1 complex in centrosome duplication. | Wang W et al |
| 12600309 | 2003 | Regulating access to the genome: nucleocytoplasmic transport throughout the cell cycle. | Weis K et al |
| 10334991 | 1999 | Stimulation of microtubule aster formation and spindle assembly by the small GTPase Ran. | Wilde A et al |
| 19060893 | 2009 | Apoptotic histone modification inhibits nuclear transport by regulating RCC1. | Wong CH et al |
| 18690538 | 2008 | Ran suppresses paclitaxel-induced apoptosis in human glioblastoma cells. | Woo IS et al |
| 18339863 | 2008 | Tumor cell dependence on Ran-GTP-directed mitosis. | Xia F et al |
| 10381400 | 1999 | Ran-GTP stabilises microtubule asters and inhibits nuclear assembly in Xenopus egg extracts. | Zhang C et al |
| 17363900 | 2007 | The human Nup107-160 nuclear pore subcomplex contributes to proper kinetochore functions. | Zuccolo M et al |
Other Information
Locus ID:
NCBI: 5901
MIM: 601179
HGNC: 9846
Ensembl: ENSG00000132341
Variants:
dbSNP: 5901
ClinVar: 5901
TCGA: ENSG00000132341
COSMIC: RAN
RNA/Proteins
Expression (GTEx)
Pathways
References
| Pubmed ID | Year | Title | Citations |
|---|---|---|---|
| 38336287 | 2024 | Up-regulation of RAN by MYBL2 maintains osteosarcoma cancer stem-like cells population during heterogeneous tumor generation. | 0 |
| 39041645 | 2024 | Association of RAN and RANBP2 Gene Polymorphisms With Glioma Susceptibility in Chinese Children. | 0 |
| 38336287 | 2024 | Up-regulation of RAN by MYBL2 maintains osteosarcoma cancer stem-like cells population during heterogeneous tumor generation. | 0 |
| 39041645 | 2024 | Association of RAN and RANBP2 Gene Polymorphisms With Glioma Susceptibility in Chinese Children. | 0 |
| 37311119 | 2023 | Investigation of the association of the RAN (rs14035) and XPO5 (rs11077) polymorphisms with venous thromboembolism. | 0 |
| 37473800 | 2023 | Development and validation of Ran as a prognostic marker in stage I and stage II primary breast cancer. | 1 |
| 37563360 | 2023 | B-type Plexins promote the GTPase activity of Ran to affect androgen receptor nuclear translocation in prostate cancer. | 0 |
| 37311119 | 2023 | Investigation of the association of the RAN (rs14035) and XPO5 (rs11077) polymorphisms with venous thromboembolism. | 0 |
| 37473800 | 2023 | Development and validation of Ran as a prognostic marker in stage I and stage II primary breast cancer. | 1 |
| 37563360 | 2023 | B-type Plexins promote the GTPase activity of Ran to affect androgen receptor nuclear translocation in prostate cancer. | 0 |
| 33234696 | 2022 | Ran GTPase is an independent prognostic marker in malignant melanoma which promotes tumour cell migration and invasion. | 3 |
| 34373133 | 2022 | NEAT1 Boosts the Development of Thoracic Aortic Aneurysm Through Targeting miR-324-5p/RAN. | 0 |
| 35013134 | 2022 | RSL1D1 promotes the progression of colorectal cancer through RAN-mediated autophagy suppression. | 6 |
| 35137065 | 2022 | Mechanistic convergence across initiation sites for RAN translation in fragile X associated tremor ataxia syndrome. | 7 |
| 36209829 | 2022 | Matrix metalloproteinase 2 is a target of the RAN-GTP pathway and mediates migration, invasion and metastasis in human breast cancer. | 5 |
Citation
Wilhelmina Maria Rensen ; Patrizia Lavia
RAN (RAN, member RAS oncogene family)
Atlas Genet Cytogenet Oncol Haematol. 2009-11-01
Online version: http://atlasgeneticsoncology.org/gene/42039/chromosome-explorer/new-content/
