Identity

Abstract
DLX5 belongs to the six-member family of DLX genes characterized by a homeobox related to that found in the insect Distal-less (Dll) gene. The six DLX genes are organized as three bigenic pairs with a tail-to-tail orientation (Zerucha et al., 2000) and located on chromosomes where HOX clusters are also found (DLX5\/DLX6; 7q21.3, syntenic to the HOXA cluster), (DLX1\/DLX2; 2q32, syntenic to the HOXD cluster; Simeone et al., 1994) and (DLX3\/DLX4; 17q21.33, syntenic to the HOXB cluster). During embryonic development DLX genes are involved in the control of appendage and craniofacial morphogenesis and in the differentiation of reproductive organs; in the adult they play a role in bone homeostasis and in the maintenance of tissue integrity.
DNA/RNA

Description
Genomic features
Mutations: Breakpoint analyses of genomic deletions and chromosomal rearrangements in the congenital split-hand/split-foot malformation (SHFM type 1D, OMIM #220600), have shown that positional effect and disrupted regulatory elements controlling DLX5/DLX6 activity are involved in the pathogenesis of this developmental disorder (see further "dysmorphologies"). In-depth sequencing of the candidate regions has shown that the expression of DLX6 depends upon the activity of conserved regulatory elements shared with DLX5, and located both within the DLX5/DLX6 intergenic territory and outside of the locus (Lango Allen et al., 2014). Furthermore these enhancers have been identified in all examined species - including in mouse where transgenic analyses have allowed the functional characterization of their tissue-specificity.
Moreover, recent analyses of genomic integrity in SHFM1D probands have unravelled two new intragenic, non-synonymous mutations within the open reading frame of DLX5.
Imprinting: The status of parental imprinting of the DLX5/DLX6 locus has recently gained strong interest as these genes have been considered to be putative methylation targets of the methyl-CpG binding protein-2 (MECP2), and thus might be indirectly involved in the aetiology of the Rett syndrome, a severe X-linked neurodevelopmental disorder afflicting girls with MECP2 mutation (see further "Rett syndrome").
Transcription
Pseudogene
Proteins

Description
Localisation
Function
Transcription from DLX5 yields three splice variants, which range from 1062 b to 1688 b (major isoform) due to alternative splicing sites throughout the precursor transcript. The shortest (Dlx5-002) is not processed. The other two share exon 1 which encodes an N-terminal DLL domain, and exon 2 which encodes a part of the homeodomain.
The shorter transcript (DLX5-003) encodes a predicted 191 AA-long, 20.9 kDa isoform with both N-terminal DLL domain and a homeodomain. It should be observed that in vitro 35S-primed expression from full-length murine Dlx5 yields only one isoform at 32 kDa (Zhang et al., 1997). The latter study provided evidence for an incompatibility between Dlx5 DNA binding to its target homeodomain-responsive element (TAATTA) and heterodimerization with its partner Msx factor. It further showed that both events were mutually antagonistic, suggesting a regulatory role during Dlx/Msx-controlled morphogenetic processes such as branchial arch and limb formation.
During bone formation, Dlx5 (pI 9.3) transactivation activity is enhanced through serine phosphorylation in the nucleus by p38 MAP-kinase upon BMP2 signaling (Ulsamer et al., 2008). Dlx5 has further been shown to be subjected to threonine phosphorylation by PKA during BMP2-induced osteoblast differentiation, which increases Dlx5 nuclear levels by improving its stability (Han et al., 2011).

Homology
Mutations
Germinal
Recently, a second rare familial case of SHFM1 has been demonstrated to result, with highest probability, from intragenic missense mutations of a critical glutamine residue in the third helix of the DLX5 homeodomain - Q186H (Wang et al., 2014). The encoded mutant DLX5 has been demonstrated to fail at transactivating a bona fide MYC target. Such an observation is not unexpected as this mutation affects Q50, the most conserved residue of all homeoproteins (see diagram above), which numerous biochemical studies have demonstrated to be responsible for the specificity of the DNA recognition at the TAATT homeo-element (for review, Galliot et al., 1999).
Somatic
Overexpression of DLX5 has been reported in several types of human malignancy including lung cancer (Kato et al., 2008; Xu and Testa, 2009), T-cell lymphoma (Tan et al., 2008), and ovarian cancer (Tan et al., 2010), etc.
Implicated in
A DLX5 transcript isoform has been shown to be strongly overexpressed in a large panel of primary lung cancer samples, providing a reliable prognosis marker (Kato et al., 2008). In this study, the detected isoform (1.8 kb on Northern blot using a probe spanning exon 3 and 3UTR) was claimed to be found only in the placenta, among 23 normal adult tissues. It should be observed that other studies have reported numerous expression sites in adult human, including bone (osteoblasts and marrow), ear, tooth, fat and brain. With regards to function, down-regulation of DLX5 through RNA interference compromised the growth or survival of two lung cancer cell lines, suggesting that controling DLX5 expression levels might be clinically relevant (Kato et al., 2008).
On a further note, SHFM cases have often been reported to include hearing loss, a trait consistent with a developmental role demonstrated for Dlx5/Dlx6 during ear formation in mouse embryogenesis (Acampora et al., 1999; Merlo et al., 2002; Robledo and Lufkin, 2006; Chatterjee et al., 2010; Frenz et al., 2010). Moreover, both genes are major targets of two regulator genes whose deficiencies are responsible for a related pathogenic condition, the auriculo-condylar syndrome (ACS, Rieder et al., 2012; Brown et al., 2010).
Anorectal malformation associated with SHFM has been reported in a family with a missense mutation in the P63 gene, a known direct upstream regulator of DLX5/DLX6 during morphogenesis (Su et al., 2013). Whether DLX5/DLX6 expression is dysregulated in this condition, and whether this trait can be functionaly associated with the phenotype, remains to be elucidated.
i) retinoic acid, a vitamin A derivative found in the RoAccutane ® drug, which indirectly prevents the induction of DLX5/DLX6 in human (Lammer et al., 1985; Coberly et al., 1996) and in all animal models investigated (Vieux-Rochas et al., 2007), which share a wide range of jaw and ear malformations;
ii) the food contaminant ochratoxin A, a fungal toxin demonstrated to prevent Dlx5 activation in exposed mouse embryos, which later develop craniofacial malformations (Wei and Sulik, 1993; Napoletano et al., 2010). Although a causal link between Dlx5, Dlx6 and the toxin remains to be functionally demonstrated, this observation may account for teratogenesis observed in human embryos maternally exposed to the toxin (Hope and Hope, 2012; Thrasher et al., 2012).
Article Bibliography
| Pubmed ID | Last Year | Title | Authors |
|---|---|---|---|
| 12360280 | 2002 | Deregulated homeobox gene expression in cancer: cause or consequence? | Abate-Shen C et al |
| 10433909 | 1999 | Craniofacial, vestibular and bone defects in mice lacking the Distal-less-related gene Dlx5. | Acampora D et al |
| 21505076 | 2011 | Allelic reduction of Dlx5 and Dlx6 results in early follicular depletion: a new mouse model of primary ovarian insufficiency. | Bouhali K et al |
| 19707792 | 2010 | Deletion of an enhancer near DLX5 and DLX6 in a family with hearing loss, craniofacial defects, and an inv(7)(q21.3q35). | Brown KK et al |
| 22428046 | 2012 | Genome-wide linkage in a highly consanguineous pedigree reveals two novel loci on chromosome 7 for non-syndromic familial Premature Ovarian Failure. | Caburet S et al |
| 21720365 | 2011 | Integrated genomic analyses of ovarian carcinoma. | |
| 21068835 | 2010 | Dysfunction in GABA signalling mediates autism-like stereotypies and Rett syndrome phenotypes. | Chao HT et al |
| 20637105 | 2010 | A symphony of inner ear developmental control genes. | Chatterjee S et al |
| 9025880 | 1996 | Retinoic acid embryopathy: case report and review of literature. | Coberly S et al |
| 8733122 | 1996 | Characterization of the split hand/split foot malformation locus SHFM1 at 7q21.3-q22.1 and analysis of a candidate gene for its expression during limb development. | Crackower MA et al |
| 21108385 | 2010 | Retinoid signaling in inner ear development: A "Goldilocks" phenomenon. | Frenz DA et al |
| 10079362 | 1999 | Evolution of homeobox genes: Q50 Paired-like genes founded the Paired class. | Galliot B et al |
| 21406180 | 2011 | Protein kinase A phosphorylates and regulates the osteogenic activity of Dlx5. | Han Y et al |
| 15456894 | 2004 | Dlx3 transcriptional regulation of osteoblast differentiation: temporal recruitment of Msx2, Dlx3, and Dlx5 homeodomain proteins to chromatin of the osteocalcin gene. | Hassan MQ et al |
| 12853948 | 2003 | The DNA sequence of human chromosome 7. | Hillier LW et al |
| 22253638 | 2012 | A review of the diagnosis and treatment of Ochratoxin A inhalational exposure associated with human illness and kidney disease including focal segmental glomerulosclerosis. | Hope JH et al |
| 15608638 | 2005 | Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome. | Horike S et al |
| 18413826 | 2008 | Activation of placenta-specific transcription factor distal-less homeobox 5 predicts clinical outcome in primary lung cancer patients. | Kato T et al |
| 17965611 | 2007 | The Odyssey of MeCP2 and parental imprinting. | LaSalle JM et al |
| 3162101 | 1985 | Retinoic acid embryopathy. | Lammer EJ et al |
| 24459211 | 2014 | Next generation sequencing of chromosomal rearrangements in patients with split-hand/split-foot malformation provides evidence for DYNC1I1 exonic enhancers of DLX5/6 expression in humans. | Lango Allen H et al |
| 23348913 | 2013 | Novel alterations in the epigenetic signature of MeCP2-targeted promoters in lymphocytes of Rett syndrome patients. | Lilja T et al |
| 18326838 | 2008 | Regulation of Dlx5 and Dlx6 gene expression by p63 is involved in EEC and SHFM congenital limb defects. | Lo Iacono N et al |
| 12142028 | 2002 | The Dlx5 homeobox gene is essential for vestibular morphogenesis in the mouse embryo through a BMP4-mediated pathway. | Merlo GR et al |
| 18537997 | 2008 | DLX5 expression is monoallelic and Dlx5 is up-regulated in the Mecp2-null frontal cortex. | Miyano M et al |
| 21108812 | 2010 | Mutually exclusive expression of DLX2 and DLX5/6 is associated with the metastatic potential of the human breast cancer cell line MDA-MB-231. | Morini M et al |
| 20036863 | 2010 | Ochratoxin A induces craniofacial malformation in mice acting on Dlx5 gene expression. | Napoletano M et al |
| 18276760 | 2008 | Positive regulation of steroidogenic acute regulatory protein gene expression through the interaction between Dlx and GATA-4 for testicular steroidogenesis. | Nishida H et al |
| 16530701 | 2006 | Molecular subclasses of high-grade glioma predict prognosis, delineate a pattern of disease progression, and resemble stages in neurogenesis. | Phillips HS et al |
| 24099772 | 2013 | Mesenchymal stem cells from osteoporotic patients feature impaired signal transduction but sustained osteoinduction in response to BMP-2 stimulation. | Prall WC et al |
| 22560091 | 2012 | A human homeotic transformation resulting from mutations in PLCB4 and GNAI3 causes auriculocondylar syndrome. | Rieder MJ et al |
| 16900517 | 2006 | Dlx5 and Dlx6 homeobox genes are required for specification of the mammalian vestibular apparatus. | Robledo RF et al |
| 19415689 | 2009 | Increased bone resorption and osteopenia in Dlx5 heterozygous mice. | Samee N et al |
| 17725487 | 2007 | Role of DLX regulatory proteins in osteogenesis and chondrogenesis. | Samee N et al |
| 7987313 | 1994 | Physical mapping of the split hand/split foot locus on chromosome 7 and implication in syndromic ectrodactyly. | Scherer SW et al |
| 17701895 | 2007 | DLX5 and DLX6 expression is biallelic and not modulated by MeCP2 deficiency. | Schüle B et al |
| 22121204 | 2012 | Identification of a novel DLX5 mutation in a family with autosomal recessive split hand and foot malformation. | Shamseldin HE et al |
| 7907794 | 1994 | Cloning and characterization of two members of the vertebrate Dlx gene family. | Simeone A et al |
| 23736768 | 2013 | Anorectal malformation associated with a mutation in the P63 gene in a family with split hand-foot malformation. | Su P et al |
| 17878916 | 2008 | Abnormal urethra formation in mouse models of split-hand/split-foot malformation type 1 and type 4. | Suzuki K et al |
| 21045156 | 2010 | Upregulation of DLX5 promotes ovarian cancer cell proliferation by enhancing IRS-2-AKT signaling. | Tan Y et al |
| 18316591 | 2008 | A novel recurrent chromosomal inversion implicates the homeobox gene Dlx5 in T-cell lymphomas from Lck-Akt2 transgenic mice. | Tan Y et al |
| 22220187 | 2012 | A water-damaged home and health of occupants: a case study. | Thrasher JD et al |
| 18056716 | 2008 | BMP-2 induces Osterix expression through up-regulation of Dlx5 and its phosphorylation by p38. | Ulsamer A et al |
| 17551590 | 2007 | Molecular dynamics of retinoic acid-induced craniofacial malformations: implications for the origin of gnathostome jaws. | Vieux-Rochas M et al |
| 24496061 | 2014 | Exome sequencing reveals a heterozygous DLX5 mutation in a Chinese family with autosomal-dominant split-hand/foot malformation. | Wang X et al |
| 8279484 | 1993 | Pathogenesis of craniofacial and body wall malformations induced by ochratoxin A in mice. | Wei X et al |
| 19497851 | 2009 | DLX5 (distal-less homeobox 5) promotes tumor cell proliferation by transcriptionally regulating MYC. | Xu J et al |
| 10632600 | 2000 | A highly conserved enhancer in the Dlx5/Dlx6 intergenic region is the site of cross-regulatory interactions between Dlx genes in the embryonic forebrain. | Zerucha T et al |
| 9111364 | 1997 | Heterodimerization of Msx and Dlx homeoproteins results in functional antagonism. | Zhang H et al |
Other Information
Locus ID:
NCBI: 1749
MIM: 600028
HGNC: 2918
Ensembl: ENSG00000105880
Variants:
dbSNP: 1749
ClinVar: 1749
TCGA: ENSG00000105880
COSMIC: DLX5
RNA/Proteins
| Gene ID | Transcript ID | Uniprot |
|---|---|---|
| ENSG00000105880 | ENST00000486603 | P56178 |
| ENSG00000105880 | ENST00000648378 | P56178 |
| ENSG00000105880 | ENST00000648378 | Q53Y73 |
Expression (GTEx)
Pathways
| Pathway | Source | External ID |
|---|---|---|
| Signaling pathways regulating pluripotency of stem cells | KEGG | hsa04550 |
| Signaling pathways regulating pluripotency of stem cells | KEGG | ko04550 |
Protein levels (Protein atlas)
References
| Pubmed ID | Year | Title | Citations |
|---|---|---|---|
| 37776184 | 2024 | Sequence variants in DLX5, HOXD13 and 445 kb-microduplication surrounding BTRC cause split-hand/foot malformation in three different families. | 0 |
| 37776184 | 2024 | Sequence variants in DLX5, HOXD13 and 445 kb-microduplication surrounding BTRC cause split-hand/foot malformation in three different families. | 0 |
| 34283652 | 2021 | Dlx5 promotes cancer progression through regulation of CCND1 in oral squamous cell carcinoma (OSCC). | 4 |
| 34370013 | 2021 | Activation of bivalent factor DLX5 cooperates with master regulator TP63 to promote squamous cell carcinoma. | 9 |
| 34705345 | 2021 | Identification and functional analysis of changes to the ox-LDL-induced microRNA-124-3p/DLX5 axis in vascular smooth muscle cells. | 1 |
| 34283652 | 2021 | Dlx5 promotes cancer progression through regulation of CCND1 in oral squamous cell carcinoma (OSCC). | 4 |
| 34370013 | 2021 | Activation of bivalent factor DLX5 cooperates with master regulator TP63 to promote squamous cell carcinoma. | 9 |
| 34705345 | 2021 | Identification and functional analysis of changes to the ox-LDL-induced microRNA-124-3p/DLX5 axis in vascular smooth muscle cells. | 1 |
| 32650430 | 2020 | Distal-Less Homeobox 5 Is a Therapeutic Target for Attenuating Hypertrophy and Apoptosis of Mesenchymal Progenitor Cells. | 6 |
| 32856377 | 2020 | Inhibition of microRNA-27b-3p relieves osteoarthritis pain via regulation of KDM4B-dependent DLX5. | 4 |
| 32650430 | 2020 | Distal-Less Homeobox 5 Is a Therapeutic Target for Attenuating Hypertrophy and Apoptosis of Mesenchymal Progenitor Cells. | 6 |
| 32856377 | 2020 | Inhibition of microRNA-27b-3p relieves osteoarthritis pain via regulation of KDM4B-dependent DLX5. | 4 |
| 30176105 | 2019 | Children's biobehavioral reactivity to challenge predicts DNA methylation in adolescence and emerging adulthood. | 2 |
| 30503866 | 2019 | Distal-less homeobox 5 promotes the osteo-/dentinogenic differentiation potential of stem cells from apical papilla by activating histone demethylase KDM4B through a positive feedback mechanism. | 13 |
| 30176105 | 2019 | Children's biobehavioral reactivity to challenge predicts DNA methylation in adolescence and emerging adulthood. | 2 |
Citation
Yorick Gitton ; Giovanni Levi
DLX5 (distal-less homeobox 5)
Atlas Genet Cytogenet Oncol Haematol. 2014-03-01
Online version: http://atlasgeneticsoncology.org/gene/44295/dlx5-(distal-less-homeobox-5)
Historical Card
2012-03-01 DLX5 (distal-less homeobox 5) by Jinfei Xu,Joseph R Testa  Affiliation
