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MYC

Identity

Other namesC-MYC
identified as the oncogene of the MC29 avian myelocytomatosis virus
HGNC (Hugo) MYC
Location 8q24
Location_base_pair Starts at 128817498 and ends at 128822855 bp from pter ( according to hg18-Mar_2006)  [Mapping]
 
  c-MYC (8q24) in normal cells: PAC 944B18 (top) and PAC 968N11 (below) - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics. Laboratories willing to validate the probes are wellcome: contact M Rocchi

DNA/RNA

Transcription alternative splicing; coding sequences: 1318 and 1362 bp for proteins p64 and p67 respectively

Protein

Description 439 amino acids and 48 kDa in the p64; 454 amino acids in the p67 (15 additional amino acids in N-term; contains from N-term to C-term: a transactivation domain,an acidic domain, a nuclear localization signal, a basic domain, an helix-loop-helix motif, and a leucin zipper; DNA binding protein
Expression expressed in almost all proliferating cells in embryonic and adult tissues; in adult tissues, expression correlates with cell proliferation; abnormally high expression is found in a wide variety of human and rodent tumours
Localisation located predominantly in the nucleus
Function
  • The encoded myc oncoproteins are apparently transcription factors known as basic region-helixloop-helix-leucine zipper (b-HLH-Zip) proteins; like other b-HLH-Zip proteins, they modulate the expression of target genes by binding to specific DNA sequences
  • In this case, however, the binding requires dimerization to another b-HLH-Zip protein, namely Max (the latter can also form heterodimers with Mad as well as homodimers with itself). Myc/Max complexes activate transcription and promote cell proliferation and transformation. Mad/Max complexes, however, repress transcription and block myc-mediated cell transformation. All three complexes bind to the same DNA sequence and are competitors.
  • Expression of c-myc is required for proliferation; it can over-ride p53-induced Gl-arrest by inducing an inhibitor of the cyclin kinase inhibitor WAFI(p2l). The latter (located at 6p2l) normally coordinates S and M phases of the cell cycle. If absent, cells with damaged DNA arrest not in GI but in a G2-like state from which they can pass through additional S phases without intervening normal mitoses (the deformed polyploid cells that result may then die by apoptosis). The uncoupling of S and M may contribute to the acquisition of the chromosomal abnormalities manifested by most tumour cells when apoptotic pathways have been circumvented
  • Homology the human myc family also includes N-myc and L-myc, rather specifically implicated in neuroblastoma and small-cell lung carcinoma, respectively, in which amplified copy numbers have been found

    Implicated in

    Entity Burkitt's lymphoma
    Hybrid/Mutated Gene the gene is activated by translocation next to an immunoglobulin constant gene. Most frequently, it is positioned near the immunoglobulin heavy-chain (IgH) constant region on chromosome 14 but, in some tumours, near the light-chain region chromosome 2 (IgK) or 22 (IgL). It is now known that immunoglobulin joining enzymes may be involved in recombinations associated with a variety of chromosomal translocations in B and T cells
      
    Entity amplification has been described in many types of tumour, including breast, cervical and colon cancers, as well as in squamous cell carcinomas of the head and neck, myeloma, non-Hodgkin's lymphoma, gastric adenocarcinomas and ovarian cancer
    Prognosis C-myc involvement is by no means universally found in these cancers; there may be a correlation with the more advanced stages, suggesting a value as a prognostic indicator (although this has not been demonstrated in some studies for breast, ovarian and cervical cancers)
    Oncogenesis C-myc gene activation (enhanced expression and/or amplification) may result from chromosomal duplication as well as translocation, and from retroviral as well as point mutation. Multiple copies of the gene may be evidenced in homogeneously staining chromosomal regions and in double minutes
      
    Entity Role of c-myc in other conditions
    Disease In adult respiratory distress syndrome the degree of diffuse alveolar damage and consequently the prognosis may be related to the intensity of expression of c-myc in the alveolar cells which, if severe, may contribute to deregulation of cellular proliferation and apoptosis. In endometriosis, c-myc expression is a possibly important regulator of cellular proliferation.
      

    Breakpoints

     

    To be noted

    Although c-myc appears to be active in variety of tumours, it is important to realise that in common with other mechanistic pathways to cancer induction and progression no single genetic event (including c-myc deregulation) will prove to be necessary in the light of the inherent complexity and diversity of cellular pathways leading to neoplasia

    External links

    Nomenclature
    HGNC (Hugo)MYC   7553
    Entrez_Gene (NCBI)MYC  4609  v-myc myelocytomatosis viral oncogene homolog (avian)
    Cards
    AtlasMYCID27
    GeneCards (Weizmann)MYC
    Ensembl (Hinxton)ENSG00000136997 [Gene_View]  MYC [Vega]
    AceView (NCBI)MYC
    Genatlas (Paris)MYC
    euGene (Indiana)4609
    SOURCE (Stanford)NM_002467
    Genomic and cartography
    GoldenPath (UCSC)MYC  -  8q24   chr8:128817498-128822855 +  8q24   [Description]    (hg18-Mar_2006)
    EnsemblMYC - 8q24 [CytoView]
    Mapping of homologs : NCBIMYC [Mapview]
    OMIM113970   190080   
    Gene and transcription
    Gene : Genbank (Entrez)AK303921 AK312883 BC000141 BC000917 BC058901
    Reference sequence (RefSeq transcript) :SRSNM_002467
    Reference transcript : EntrezNM_002467
    RefSeq genomic : SRSAC_000051 AC_000140 NC_000008 NG_007161 NT_008046 NW_001839136 NW_923984
    RefSeq genomic : EntrezAC_000051 AC_000140 NC_000008 NG_007161 NT_008046 NW_001839136 NW_923984
    Consensus coding sequences : CCDS NCBIMYC
    Cluster EST : UnigeneHs.202453 [ SRS ] Hs.202453 [ NCBI ]
    Alternative Splicing : Fast-db (Paris)8586
    Protein : pattern, domain, 3D structure
    Protein : UniProt/SwissProtP01106 (SRS) P01106 (Expasy) P01106 (Uniprot)
    With graphics : InterProP01106
    Splice isoforms : VarSplice FASTAP01106(VarSplice FASTA)
    Domaine pattern : Prosite (SRS)HLH (PS50888)   
    Domain pattern : Prosite (Expaxy)HLH (PS50888)   
    Domains : Interpro (SRS)HLH_basic    HLH_DNA_bd    Myc-LZ    TF_Myc    TF_Myc_N   
    Domains : Interpro (EBI)HLH_basic    HLH_DNA_bd    Myc-LZ    TF_Myc    TF_Myc_N   
    Related proteins : CluSTrP01106
    Domain families : Pfam SRSHLH (PF00010)    Myc-LZ (PF02344)    Myc_N (PF01056)   
    Domain families : Pfam SangerHLH (PF00010)    Myc-LZ (PF02344)    Myc_N (PF01056)   
    Domain families : Pfam NCBIpfam00010    pfam02344    pfam01056   
    Domain families : Smart EMBLHLH (SM00353)
    Blocks (Seattle)P01106
    Crystal structure of protein : PDB SRS1A93    1EE4    1MV0    1NKP    2A93   
    Crystal structure of protein : PDBSum1A93    1EE4    1MV0    1NKP    2A93   
    Crystal structure of protein : IMB1A93    1EE4    1MV0    1NKP    2A93   
    Crystal structure of protein : PDB RSDB1A93    1EE4    1MV0    1NKP    2A93   
    HPRD01818
    Protein Interaction databases
    DIP (DOE-UCLA)P01106
    IntAct (EBI)P01106
    Polymorphism : SNP, mutations, diseases
    Single Nucleotide Polymorphism (SNP) : dbSNP NCBIMYC
    SNP : GeneSNP UtahMYC
    SNP : HGBaseMYC
    Genetic variants : HAPMAPMYC
    Somatic Mutations in Cancer : COSMICMYC 
    Translocation Breakpoints in Cancer : TICdbMYC 
    Mutations and Diseases : HGMDMYC
    Hereditary diseases : OMIM113970    190080   
    Hereditary diseases : GENETests113970    190080   
    Diseases : Genetic AssociationMYC
    General knowledge
    Homologs : HomoloGeneMYC
    Homology/Alignments : Family Browser UCSCMYC
    Phylogenetic Trees/Animal Genes : TreeFamMYC
    Chemical/Protein Interactions : CTD4609
    Keywords Ontology : AmiGOB cell apoptosis  release of cytochrome c from mitochondria  double-stranded DNA binding  transcription factor activity  protein binding  nucleus  cytoplasm  spindle  glucose metabolic process  DNA fragmentation during apoptosis  transcription initiation  cellular iron ion homeostasis  activation of caspase activity  cell cycle arrest  regulation of mitotic cell cycle  positive regulation of cell proliferation  induction of apoptosis by intracellular signals  activation of pro-apoptotic gene products  negative regulation of survival gene product expression  response to radiation  protein processing  nuclear body  regulation of telomere maintenance  middle ear morphogenesis  regulation of apoptosis  positive regulation of catalytic activity  response to alkaloid  pigmentation  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter  skeletal system morphogenesis  detection of mechanical stimulus involved in sensory perception of sound  
    Keywords Ontology : EGO-EBIB cell apoptosis  release of cytochrome c from mitochondria  double-stranded DNA binding  transcription factor activity  protein binding  nucleus  cytoplasm  spindle  glucose metabolic process  DNA fragmentation during apoptosis  transcription initiation  cellular iron ion homeostasis  activation of caspase activity  cell cycle arrest  regulation of mitotic cell cycle  positive regulation of cell proliferation  induction of apoptosis by intracellular signals  activation of pro-apoptotic gene products  negative regulation of survival gene product expression  response to radiation  protein processing  nuclear body  regulation of telomere maintenance  middle ear morphogenesis  regulation of apoptosis  positive regulation of catalytic activity  response to alkaloid  pigmentation  sequence-specific DNA binding  positive regulation of transcription from RNA polymerase II promoter  skeletal system morphogenesis  detection of mechanical stimulus involved in sensory perception of sound  
    Pathways : BIOCARTATumor Suppressor Arf Inhibits Ribosomal Biogenesis [Genes]    Role of EGF Receptor Transactivation by GPCRs in Cardiac Hypertrophy [Genes]    Cadmium induces DNA synthesis and proliferation in macrophages [Genes]    CTCF: First Multivalent Nuclear Factor [Genes]    Erk1/Erk2 Mapk Signaling pathway [Genes]    Inhibition of Cellular Proliferation by Gleevec [Genes]    IL-2 Receptor Beta Chain in T cell Activation [Genes]    MAPKinase Signaling Pathway [Genes]    p38 MAPK Signaling Pathway [Genes]    Mechanism of Gene Regulation by Peroxisome Proliferators via PPARa(alpha) [Genes]    Telomeres, Telomerase, Cellular Aging, and Immortality [Genes]    Overview of telomerase protein component gene hTert Transcriptional Regulation [Genes]    Neuropeptides VIP and PACAP inhibit the apoptosis of activated T cells [Genes]    WNT Signaling Pathway [Genes]   
    Pathways : KEGGMAPK signaling pathwayWnt signaling pathwayTGF-beta signaling pathwayJak-STAT signaling pathwayColorectal cancer
    Other databases
    Probes
    Probec-MYC (8q24) in normal cells (Bari)
    Probes : ImagenesMYC Related clones (RZPD - Berlin)
    Literature
    PubMed483 Pubmed reference(s) in Entrez
    PubGeneMYC

    Bibliography

    c-myc and immunoglobulin kappa light chain constant genes are on the 8q+ chromosome of three Burkitt lymphoma lines with t(2;8) translocations.
    Rappold GA, Hameister H, Cremer T, Adolph S, Henglein B, Freese UK, Lenoire GM, Bornkamm GW
    The EMBO journal. 1984 ; 3 (12) : 2951-2955.
    PMID 6441706
     
    Amplification of the c-myc oncogene in a subpopulation of human small cell lung cancer.
    Saksela K, Bergh J, Lehto VP, Nilsson K, Alitalo K
    Cancer research. 1985 ; 45 (4) : 1823-1827.
    PMID 2983887
     
    Myc family genes: a dispersed multi-gene family.
    Depinho RA, Hatton K, Ferrier P, Zimmerman K, Legouy E, Tesfaye A, Collum R, Yancopoulos G, Nisen P, Alt F
    Annals of clinical research. 1986 ; 18 (5-6) : 284-289.
    PMID 3551773
     
    c-myc protooncogene polypeptide expression in endometriosis.
    Schenken RS, Johnson JV, Riehl RM
    American journal of obstetrics and gynecology. 1991 ; 164 (4) : 1031-1036.
    PMID 1707594
     
    The c-myc oncogene in tumor progression.
    Garte SJ
    Critical reviews in oncogenesis. 1993 ; 4 (4) : 435-449.
    PMID 8353142
     
    Chromosomal translocations deregulating c-myc are associated with normal immune responses.
    Roschke V, Kopantzev E, Dertzbaugh M, Rudikoff S
    Oncogene. 1997 ; 14 (25) : 3011-3016.
    PMID 9223664
     
    Repression by the Mad(Mxi1)-Sin3 complex.
    Schreiber-Agus N, DePinho RA
    BioEssays : news and reviews in molecular, cellular and developmental biology. 1998 ; 20 (10) : 808-818.
    PMID 9819568
     
    Amplification of the c-myc oncogene in non-small cell lung cancer.
    Ozkara HA, Ozkara S, Topˆßu S, Criss WE
    Tumori. 1999 ; 85 (6) : 508-511.
    PMID 10774575
     
    MYC oncogenes and human neoplastic disease.
    Nesbit CE, Tersak JM, Prochownik EV
    Oncogene. 1999 ; 18 (19) : 3004-3016.
    PMID 10378696
     
    Proliferation, C-myc, and cyclin D1 expression in diffuse alveolar damage: potential roles in pathogenesis and implications for prognosis.
    Adamson A, Perkins S, Brambilla E, Tripp S, Holden J, Travis W, Guinee D Jr
    Human pathology. 1999 ; 30 (9) : 1050-1057.
    PMID 10492039
     
    REVIEW articlesautomatic search in PubMed
    Last year publicationsautomatic search in PubMed

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    Contributor(s)

    Written08-2000Niels B Atkin

    Citation

    This paper should be referenced as such :
    Atkin NB . MYC. Atlas Genet Cytogenet Oncol Haematol. August 2000 .
    URL : http://AtlasGeneticsOncology.org/Genes/MYCID27.html

    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Sat Jun 27 16:41:49 CEST 2009

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